data_KBY
#
_chem_comp.id KBY
_chem_comp.name "N-[(3R)-4-(4-tert-butylphenyl)-3-({2-[(4-methoxyphenyl)sulfanyl]-5-[methyl(propan-2-yl)sulfamoyl]benzene-1-carbonyl}amino)butanoyl]glycine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H43 N3 O7 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-11-19
_chem_comp.pdbx_modified_date 2019-06-21
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 669.851
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KBY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6N48
_chem_comp.pdbx_subcomponent_list "KBS KBV GLY"
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KBY C1 C4 C 0 1 Y N N 13.360 -7.848 -20.642 -0.622 -0.665 1.469 C1 KBS 1
KBY C2 C14 C 0 1 Y N N 6.953 -8.767 -25.030 4.809 -4.076 -2.298 C2 KBS 2
KBY C3 C5 C 0 1 Y N N 12.528 -6.964 -21.150 0.030 -0.299 0.289 C3 KBS 3
KBY C4 C6 C 0 1 Y N N 11.222 -7.425 -21.804 0.978 -1.167 -0.277 C4 KBS 4
KBY C5 C11 C 0 1 Y N N 8.816 -7.218 -23.512 2.976 -2.027 -1.972 C5 KBS 5
KBY C6 C7 C 0 1 N N N 13.305 -9.756 -17.560 -2.486 -4.605 2.959 C6 KBS 6
KBY C7 C8 C 0 1 N N N 12.698 -12.082 -18.340 -3.781 -2.424 2.913 C7 KBS 7
KBY C8 C9 C 0 1 N N N 11.231 -11.709 -18.135 -4.260 -2.644 1.477 C8 KBS 8
KBY C9 C10 C 0 1 N N N 13.176 -12.931 -17.168 -4.841 -2.938 3.889 C9 KBS 9
KBY C10 C12 C 0 1 Y N N 7.531 -6.937 -23.468 2.665 -3.116 -2.776 C10 KBS 10
KBY C11 C13 C 0 1 Y N N 6.532 -7.767 -24.283 3.580 -4.138 -2.937 C11 KBS 11
KBY N1 N1 N 0 1 N N N 13.525 -10.887 -18.451 -2.527 -3.151 3.127 N1 KBS 12
KBY C12 C3 C 0 1 Y N N 13.044 -9.331 -20.705 -0.333 -1.870 2.069 C12 KBS 13
KBY C13 C1 C 0 1 Y N N 10.959 -8.719 -21.842 1.257 -2.379 0.344 C13 KBS 14
KBY C14 C15 C 0 1 Y N N 8.437 -9.095 -25.080 5.119 -2.991 -1.491 C14 KBS 15
KBY C15 C16 C 0 1 Y N N 9.293 -8.380 -24.385 4.206 -1.968 -1.328 C15 KBS 16
KBY C16 C17 C 0 1 N N N 6.080 -10.908 -25.477 5.325 -6.169 -3.302 C16 KBS 17
KBY C17 C18 C 0 1 N N N 12.947 -5.507 -21.035 -0.276 0.989 -0.359 C17 KBS 18
KBY C19 C2 C 0 1 Y N N 11.927 -9.738 -21.253 0.604 -2.725 1.509 C19 KBS 19
KBY O1 O1 O 0 1 N N N 15.553 -9.991 -19.902 -1.589 -1.118 4.166 O1 KBS 20
KBY O2 O2 O 0 1 N N N 14.371 -11.716 -20.821 -0.313 -3.267 4.211 O2 KBS 21
KBY O3 O3 O 0 1 N N N 6.055 -9.537 -25.780 5.709 -5.083 -2.457 O3 KBS 22
KBY O4 O4 O 0 1 N N N 12.146 -4.629 -21.016 0.294 1.303 -1.387 O4 KBS 23
KBY S1 S1 S 0 1 N N N 14.193 -10.528 -19.981 -1.156 -2.328 3.558 S1 KBS 24
KBY S2 S2 S 0 1 N N N 10.026 -6.251 -22.538 1.810 -0.723 -1.765 S2 KBS 25
KBY N2 N2 N 0 1 N N N 14.378 -5.270 -20.917 -1.187 1.819 0.187 N2 KBV 26
KBY C18 C19 C 0 1 N N R 14.934 -3.940 -20.793 -1.574 3.046 -0.514 C18 KBV 27
KBY C20 C20 C 0 1 N N N 15.483 -3.526 -22.154 -1.291 4.254 0.380 C20 KBV 28
KBY C21 C21 C 0 1 N N N 16.064 -3.992 -19.767 -3.066 2.994 -0.846 C21 KBV 29
KBY C22 C22 C 0 1 Y N N 14.311 -3.338 -23.115 0.193 4.376 0.606 C22 KBV 30
KBY C23 C23 C 0 1 Y N N 13.993 -4.288 -23.968 0.965 5.128 -0.260 C23 KBV 31
KBY C24 C24 C 0 1 Y N N 12.817 -4.092 -24.922 2.328 5.239 -0.052 C24 KBV 32
KBY C25 C25 C 0 1 Y N N 12.120 -2.972 -24.894 2.918 4.600 1.022 C25 KBV 33
KBY C26 C26 C 0 1 Y N N 12.491 -1.875 -23.896 2.146 3.848 1.888 C26 KBV 34
KBY C27 C27 C 0 1 Y N N 13.504 -2.044 -23.075 0.783 3.740 1.683 C27 KBV 35
KBY C28 C28 C 0 1 N N N 10.938 -2.776 -25.850 4.403 4.721 1.248 C28 KBV 36
KBY C29 C29 C 0 1 N N N 11.283 -3.343 -27.232 4.770 6.193 1.447 C29 KBV 37
KBY C30 C30 C 0 1 N N N 10.620 -1.288 -26.000 4.796 3.924 2.494 C30 KBV 38
KBY C31 C31 C 0 1 N N N 9.704 -3.493 -25.297 5.150 4.169 0.033 C31 KBV 39
KBY C32 C32 C 0 1 N N N 15.451 -4.090 -18.371 -3.320 1.899 -1.850 C32 KBV 40
KBY O5 O5 O 0 1 N N N 14.701 -3.243 -18.014 -2.412 1.176 -2.202 O5 KBV 41
KBY N3 N3 N 0 1 N N N 15.762 -5.189 -17.468 -4.557 1.723 -2.357 N GLY 42
KBY C33 C33 C 0 1 N N N 16.674 -6.255 -17.853 -4.803 0.658 -3.332 CA GLY 43
KBY C34 C34 C 0 1 N N N 16.635 -7.366 -16.803 -6.255 0.675 -3.737 C GLY 44
KBY O6 O6 O 0 1 N N N 17.291 -8.427 -16.984 -7.006 1.492 -3.260 O GLY 45
KBY O7 O7 O 0 1 N N N 15.948 -7.221 -15.756 -6.713 -0.218 -4.629 OXT GLY 46
KBY H1 H1 H 0 1 N N N 14.276 -7.515 -20.176 -1.349 -0.001 1.913 H1 KBS 47
KBY H2 H2 H 0 1 N N N 14.022 -8.957 -17.797 -2.236 -4.845 1.925 H2 KBS 48
KBY H3 H3 H 0 1 N N N 12.280 -9.380 -17.692 -1.730 -5.026 3.622 H3 KBS 49
KBY H4 H4 H 0 1 N N N 13.446 -10.078 -16.518 -3.461 -5.027 3.205 H4 KBS 50
KBY H5 H5 H 0 1 N N N 12.784 -12.675 -19.262 -3.618 -1.360 3.083 H5 KBS 51
KBY H6 H6 H 0 1 N N N 10.886 -11.096 -18.981 -5.193 -2.103 1.318 H6 KBS 52
KBY H7 H7 H 0 1 N N N 10.625 -12.625 -18.075 -3.504 -2.277 0.782 H7 KBS 53
KBY H8 H8 H 0 1 N N N 11.125 -11.137 -17.201 -4.423 -3.708 1.307 H8 KBS 54
KBY H9 H9 H 0 1 N N N 14.232 -13.199 -17.316 -5.774 -2.398 3.730 H9 KBS 55
KBY H10 H10 H 0 1 N N N 13.070 -12.359 -16.234 -5.005 -4.003 3.719 H10 KBS 56
KBY H11 H11 H 0 1 N N N 12.570 -13.847 -17.108 -4.501 -2.782 4.912 H11 KBS 57
KBY H12 H12 H 0 1 N N N 7.179 -6.120 -22.856 1.709 -3.163 -3.277 H12 KBS 58
KBY H13 H13 H 0 1 N N N 5.479 -7.531 -24.244 3.338 -4.985 -3.562 H13 KBS 59
KBY H16 H16 H 0 1 N N N 10.042 -9.061 -22.299 1.985 -3.051 -0.086 H16 KBS 60
KBY H17 H17 H 0 1 N N N 8.788 -9.916 -25.687 6.075 -2.946 -0.990 H17 KBS 61
KBY H18 H18 H 0 1 N N N 10.346 -8.616 -24.431 4.449 -1.121 -0.704 H18 KBS 62
KBY H19 H19 H 0 1 N N N 5.349 -11.437 -26.107 4.427 -6.640 -2.902 H19 KBS 63
KBY H20 H20 H 0 1 N N N 7.087 -11.308 -25.669 5.122 -5.796 -4.306 H20 KBS 64
KBY H21 H21 H 0 1 N N N 5.824 -11.054 -24.417 6.131 -6.902 -3.342 H21 KBS 65
KBY H23 H23 H 0 1 N N N 11.692 -10.792 -21.288 0.824 -3.668 1.987 H23 KBS 66
KBY H14 H14 H 0 1 N N N 14.999 -6.054 -20.922 -1.586 1.604 1.044 H14 KBV 67
KBY H22 H22 H 0 1 N N N 14.167 -3.222 -20.466 -0.999 3.134 -1.436 H22 KBV 68
KBY H24 H24 H 0 1 N N N 16.039 -2.582 -22.058 -1.660 5.159 -0.105 H24 KBV 69
KBY H25 H25 H 0 1 N N N 16.154 -4.309 -22.537 -1.795 4.124 1.337 H25 KBV 70
KBY H26 H26 H 0 1 N N N 16.696 -4.872 -19.957 -3.634 2.793 0.062 H26 KBV 71
KBY H27 H27 H 0 1 N N N 16.674 -3.079 -19.841 -3.378 3.951 -1.265 H27 KBV 72
KBY H28 H28 H 0 1 N N N 14.563 -5.205 -23.993 0.504 5.628 -1.099 H28 KBV 73
KBY H29 H29 H 0 1 N N N 12.555 -4.872 -25.621 2.931 5.826 -0.729 H29 KBV 74
KBY H30 H30 H 0 1 N N N 11.920 -0.959 -23.865 2.607 3.348 2.727 H30 KBV 75
KBY H31 H31 H 0 1 N N N 13.765 -1.267 -22.372 0.179 3.157 2.362 H31 KBV 76
KBY H32 H32 H 0 1 N N N 10.430 -3.198 -27.912 4.237 6.586 2.313 H32 KBV 77
KBY H33 H33 H 0 1 N N N 12.164 -2.820 -27.633 5.844 6.280 1.611 H33 KBV 78
KBY H34 H34 H 0 1 N N N 11.503 -4.417 -27.143 4.490 6.760 0.560 H34 KBV 79
KBY H35 H35 H 0 1 N N N 9.771 -1.161 -26.688 4.534 2.875 2.352 H35 KBV 80
KBY H36 H36 H 0 1 N N N 10.361 -0.868 -25.017 5.870 4.011 2.657 H36 KBV 81
KBY H37 H37 H 0 1 N N N 11.499 -0.764 -26.403 4.263 4.317 3.359 H37 KBV 82
KBY H38 H38 H 0 1 N N N 8.858 -3.351 -25.985 4.870 4.736 -0.855 H38 KBV 83
KBY H39 H39 H 0 1 N N N 9.918 -4.567 -25.197 6.224 4.256 0.196 H39 KBV 84
KBY H40 H40 H 0 1 N N N 9.449 -3.077 -24.311 4.889 3.120 -0.109 H40 KBV 85
KBY H15 H15 H 0 1 N N N 15.339 -5.212 -16.562 -5.283 2.301 -2.075 H GLY 86
KBY H41 H41 H 0 1 N N N 16.370 -6.662 -18.829 -4.179 0.819 -4.211 HA2 GLY 87
KBY H42 H42 H 0 1 N N N 17.696 -5.855 -17.925 -4.562 -0.306 -2.887 HA3 GLY 88
KBY H43 H43 H 0 1 N N N 16.032 -7.995 -15.212 -7.652 -0.168 -4.857 HXT GLY 89
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KBY C1 C12 DOUB Y N 1
KBY C1 C3 SING Y N 2
KBY C2 O3 SING N N 3
KBY C2 C14 DOUB Y N 4
KBY C2 C11 SING Y N 5
KBY C3 C4 DOUB Y N 6
KBY C3 C17 SING N N 7
KBY C4 C13 SING Y N 8
KBY C4 S2 SING N N 9
KBY C5 C10 SING Y N 10
KBY C5 C15 DOUB Y N 11
KBY C5 S2 SING N N 12
KBY C6 N1 SING N N 13
KBY C7 C8 SING N N 14
KBY C7 C9 SING N N 15
KBY C7 N1 SING N N 16
KBY C10 C11 DOUB Y N 17
KBY N1 S1 SING N N 18
KBY N2 C17 SING N N 19
KBY N2 C18 SING N N 20
KBY C12 C19 SING Y N 21
KBY C12 S1 SING N N 22
KBY N3 C33 SING N N 23
KBY N3 C32 SING N N 24
KBY C13 C19 DOUB Y N 25
KBY C14 C15 SING Y N 26
KBY C16 O3 SING N N 27
KBY C17 O4 DOUB N N 28
KBY C18 C20 SING N N 29
KBY C18 C21 SING N N 30
KBY C20 C22 SING N N 31
KBY C21 C32 SING N N 32
KBY C22 C23 DOUB Y N 33
KBY C22 C27 SING Y N 34
KBY C23 C24 SING Y N 35
KBY C24 C25 DOUB Y N 36
KBY C25 C28 SING N N 37
KBY C25 C26 SING Y N 38
KBY C26 C27 DOUB Y N 39
KBY C28 C29 SING N N 40
KBY C28 C30 SING N N 41
KBY C28 C31 SING N N 42
KBY C32 O5 DOUB N N 43
KBY C33 C34 SING N N 44
KBY C34 O6 DOUB N N 45
KBY C34 O7 SING N N 46
KBY O1 S1 DOUB N N 47
KBY O2 S1 DOUB N N 48
KBY C1 H1 SING N N 49
KBY C6 H2 SING N N 50
KBY C6 H3 SING N N 51
KBY C6 H4 SING N N 52
KBY C7 H5 SING N N 53
KBY C8 H6 SING N N 54
KBY C8 H7 SING N N 55
KBY C8 H8 SING N N 56
KBY C9 H9 SING N N 57
KBY C9 H10 SING N N 58
KBY C9 H11 SING N N 59
KBY C10 H12 SING N N 60
KBY C11 H13 SING N N 61
KBY N2 H14 SING N N 62
KBY N3 H15 SING N N 63
KBY C13 H16 SING N N 64
KBY C14 H17 SING N N 65
KBY C15 H18 SING N N 66
KBY C16 H19 SING N N 67
KBY C16 H20 SING N N 68
KBY C16 H21 SING N N 69
KBY C18 H22 SING N N 70
KBY C19 H23 SING N N 71
KBY C20 H24 SING N N 72
KBY C20 H25 SING N N 73
KBY C21 H26 SING N N 74
KBY C21 H27 SING N N 75
KBY C23 H28 SING N N 76
KBY C24 H29 SING N N 77
KBY C26 H30 SING N N 78
KBY C27 H31 SING N N 79
KBY C29 H32 SING N N 80
KBY C29 H33 SING N N 81
KBY C29 H34 SING N N 82
KBY C30 H35 SING N N 83
KBY C30 H36 SING N N 84
KBY C30 H37 SING N N 85
KBY C31 H38 SING N N 86
KBY C31 H39 SING N N 87
KBY C31 H40 SING N N 88
KBY C33 H41 SING N N 89
KBY C33 H42 SING N N 90
KBY O7 H43 SING N N 91
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KBY SMILES ACDLabs 12.01 "c1c(ccc(c1C(=O)NC(Cc2ccc(C(C)(C)C)cc2)CC(=O)NCC(=O)O)Sc3ccc(OC)cc3)S(N(C)C(C)C)(=O)=O"
KBY InChI InChI 1.03 "InChI=1S/C34H43N3O7S2/c1-22(2)37(6)46(42,43)28-16-17-30(45-27-14-12-26(44-7)13-15-27)29(20-28)33(41)36-25(19-31(38)35-21-32(39)40)18-23-8-10-24(11-9-23)34(3,4)5/h8-17,20,22,25H,18-19,21H2,1-7H3,(H,35,38)(H,36,41)(H,39,40)/t25-/m1/s1"
KBY InChIKey InChI 1.03 POBZRCRFILRWTQ-RUZDIDTESA-N
KBY SMILES_CANONICAL CACTVS 3.385 "COc1ccc(Sc2ccc(cc2C(=O)N[C@@H](CC(=O)NCC(O)=O)Cc3ccc(cc3)C(C)(C)C)[S](=O)(=O)N(C)C(C)C)cc1"
KBY SMILES CACTVS 3.385 "COc1ccc(Sc2ccc(cc2C(=O)N[CH](CC(=O)NCC(O)=O)Cc3ccc(cc3)C(C)(C)C)[S](=O)(=O)N(C)C(C)C)cc1"
KBY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)N(C)S(=O)(=O)c1ccc(c(c1)C(=O)N[C@H](Cc2ccc(cc2)C(C)(C)C)CC(=O)NCC(=O)O)Sc3ccc(cc3)OC"
KBY SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)N(C)S(=O)(=O)c1ccc(c(c1)C(=O)NC(Cc2ccc(cc2)C(C)(C)C)CC(=O)NCC(=O)O)Sc3ccc(cc3)OC"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KBY "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3R)-4-(4-tert-butylphenyl)-3-({2-[(4-methoxyphenyl)sulfanyl]-5-[methyl(propan-2-yl)sulfamoyl]benzene-1-carbonyl}amino)butanoyl]glycine"
KBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[[(3~{R})-4-(4-~{tert}-butylphenyl)-3-[[2-(4-methoxyphenyl)sulfanyl-5-[methyl(propan-2-yl)sulfamoyl]phenyl]carbonylamino]butanoyl]amino]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KBY "Create component" 2018-11-19 RCSB
KBY "Initial release" 2019-06-26 RCSB
##