data_KC1 # _chem_comp.id KC1 _chem_comp.name "Chlorophyll c1" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H30 Mg N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-10-17 _chem_comp.pdbx_modified_date 2019-02-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 610.941 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A2W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KC1 NB N1 N 0 1 N N N -20.359 -0.589 29.393 2.001 -1.774 0.624 NB KC1 1 KC1 ND N2 N 0 1 Y N N -17.761 -2.995 31.460 0.804 1.380 0.657 ND KC1 2 KC1 C1A C1 C 0 1 N N N -16.215 -0.262 30.577 -1.834 -0.409 -0.128 C1A KC1 3 KC1 C1B C2 C 0 1 N N N -20.124 0.632 28.855 1.290 -2.960 0.542 C1B KC1 4 KC1 C1C C3 C 0 1 N N N -21.871 -3.086 30.313 4.480 -0.022 -0.220 C1C KC1 5 KC1 C1D C4 C 0 1 Y N N -17.869 -4.217 32.026 1.478 2.587 0.549 C1D KC1 6 KC1 C2A C5 C 0 1 N N N -15.481 0.960 30.230 -2.934 -1.337 -0.411 C2A KC1 7 KC1 C2B C6 C 0 1 N N N -21.367 1.213 28.281 2.191 -4.046 0.406 C2B KC1 8 KC1 C2C C7 C 0 1 N N N -22.543 -4.304 30.790 5.598 0.870 -0.509 C2C KC1 9 KC1 C2D C8 C 0 1 Y N N -16.584 -4.603 32.644 0.526 3.599 0.356 C2D KC1 10 KC1 C3A C9 C 0 1 N N N -16.497 1.729 29.487 -2.409 -2.609 -0.174 C3A KC1 11 KC1 C3B C10 C 0 1 N N N -22.391 0.185 28.520 3.422 -3.518 0.166 C3B KC1 12 KC1 C3C C11 C 0 1 N N N -21.505 -5.089 31.440 5.171 2.130 -0.215 C3C KC1 13 KC1 C3D C12 C 0 1 Y N N -15.696 -3.453 32.373 -0.703 3.012 0.150 C3D KC1 14 KC1 C4A C13 C 0 1 N N N -17.734 0.900 29.442 -1.063 -2.434 0.191 C4A KC1 15 KC1 C4B C14 C 0 1 N N N -21.663 -0.889 29.233 3.248 -2.088 0.133 C4B KC1 16 KC1 C4C C15 C 0 1 N N N -20.314 -4.191 31.282 3.780 2.008 0.190 C4C KC1 17 KC1 C4D C16 C 0 1 Y N N -16.455 -2.541 31.656 -0.507 1.612 0.216 C4D KC1 18 KC1 CAA C17 C 0 1 N N N -14.132 1.494 30.507 -4.291 -1.002 -0.847 CAA KC1 19 KC1 CAB C18 C 0 1 N N N -23.699 0.617 27.996 4.681 -4.261 -0.022 CAB KC1 20 KC1 CAC C19 C 0 1 N N N -21.751 -6.430 32.098 5.980 3.399 -0.294 CAC KC1 21 KC1 CAD C20 C 0 1 N N N -14.330 -2.874 32.512 -2.124 3.321 -0.073 CAD KC1 22 KC1 CBA C21 C 0 1 N N N -13.278 1.905 29.586 -5.359 -1.520 -0.196 CBA KC1 23 KC1 CBB C22 C 0 1 N N N -24.519 -0.302 27.529 4.765 -5.200 -0.959 CBB KC1 24 KC1 CBC C23 C 0 1 N N N -21.573 -7.546 31.090 5.741 4.073 -1.647 CBC KC1 25 KC1 CBD C24 C 0 1 N N R -14.291 -1.578 31.885 -2.717 2.003 -0.513 CBD KC1 26 KC1 CED C25 C 0 1 N N N -12.237 0.457 34.313 -6.375 1.918 0.463 CED KC1 27 KC1 CGA C26 C 0 1 N N N -11.982 2.405 30.058 -6.668 -1.295 -0.690 CGA KC1 28 KC1 CGD C27 C 0 1 N N N -13.933 -0.602 32.960 -4.011 1.744 0.213 CGD KC1 29 KC1 CHA C28 C 0 1 N N N -15.620 -1.360 31.341 -1.700 0.973 -0.144 CHA KC1 30 KC1 CHB C29 C 0 1 N N N -18.899 1.445 28.739 -0.053 -3.339 0.461 CHB KC1 31 KC1 CHC C30 C 0 1 N N N -22.512 -2.003 29.585 4.367 -1.400 -0.324 CHC KC1 32 KC1 CHD C31 C 0 1 N N N -19.169 -4.896 31.915 2.818 2.968 0.486 CHD KC1 33 KC1 CMA C32 C 0 1 N N N -16.359 3.083 28.858 -3.145 -3.919 -0.289 CMA KC1 34 KC1 CMB C33 C 0 1 N N N -21.543 2.540 27.596 1.849 -5.510 0.507 CMB KC1 35 KC1 CMC C34 C 0 1 N N N -23.994 -4.670 30.631 6.956 0.476 -1.029 CMC KC1 36 KC1 CMD C35 C 0 1 N N N -16.448 -5.921 33.362 0.801 5.081 0.370 CMD KC1 37 KC1 NA N3 N 0 1 N N N -17.586 -0.257 30.096 -0.762 -1.131 0.229 NA KC1 38 KC1 NC N4 N 0 1 N N N -20.583 -2.933 30.548 3.439 0.712 0.183 NC KC1 39 KC1 O1A O1 O 0 1 N N N -11.172 2.776 29.190 -6.832 -0.637 -1.700 O1A KC1 40 KC1 O1D O2 O 0 1 N N N -14.726 0.114 33.554 -4.009 1.121 1.249 O1D KC1 41 KC1 O2A O3 O 0 1 N N N -11.707 2.449 31.296 -7.732 -1.811 -0.040 O2A KC1 42 KC1 O2D O4 O 0 1 N N N -12.560 -0.527 33.340 -5.167 2.205 -0.290 O2D KC1 43 KC1 OBD O5 O 0 1 N N N -13.462 -3.577 33.129 -2.688 4.386 0.065 OBD KC1 44 KC1 MG MG1 MG 0 0 N N N -18.940 -1.759 30.286 1.444 -0.187 1.530 MG KC1 45 KC1 H1 H1 H 0 1 N N N -13.820 1.553 31.539 -4.440 -0.342 -1.689 H1 KC1 46 KC1 H2 H2 H 0 1 N N N -23.978 1.660 27.995 5.535 -4.042 0.601 H2 KC1 47 KC1 H3 H3 H 0 1 N N N -21.036 -6.567 32.922 5.677 4.074 0.506 H3 KC1 48 KC1 H4 H4 H 0 1 N N N -22.777 -6.458 32.494 7.038 3.162 -0.189 H4 KC1 49 KC1 H5 H5 H 0 1 N N N -13.523 1.874 28.535 -5.214 -2.104 0.701 H5 KC1 50 KC1 H6 H6 H 0 1 N N N -25.484 -0.016 27.138 5.708 -5.690 -1.149 H6 KC1 51 KC1 H7 H7 H 0 1 N N N -24.226 -1.341 27.537 3.890 -5.473 -1.530 H7 KC1 52 KC1 H8 H8 H 0 1 N N N -21.754 -8.515 31.579 6.326 4.990 -1.704 H8 KC1 53 KC1 H9 H9 H 0 1 N N N -22.288 -7.412 30.265 6.044 3.398 -2.448 H9 KC1 54 KC1 H10 H10 H 0 1 N N N -20.547 -7.522 30.693 4.682 4.310 -1.753 H10 KC1 55 KC1 H11 H11 H 0 1 N N N -13.536 -1.552 31.086 -2.881 2.003 -1.590 H11 KC1 56 KC1 H12 H12 H 0 1 N N N -11.158 0.422 34.526 -6.502 0.838 0.548 H12 KC1 57 KC1 H13 H13 H 0 1 N N N -12.503 1.453 33.929 -6.295 2.353 1.459 H13 KC1 58 KC1 H14 H14 H 0 1 N N N -12.800 0.257 35.237 -7.235 2.345 -0.053 H14 KC1 59 KC1 H15 H15 H 0 1 N N N -18.863 2.369 28.180 -0.282 -4.393 0.617 H15 KC1 60 KC1 H16 H16 H 0 1 N N N -23.559 -2.030 29.323 5.160 -2.006 -0.762 H16 KC1 61 KC1 H17 H17 H 0 1 N N N -19.291 -5.901 32.291 3.092 4.001 0.655 H17 KC1 62 KC1 H18 H18 H 0 1 N N N -17.310 3.365 28.382 -3.046 -4.304 -1.304 H18 KC1 63 KC1 H19 H19 H 0 1 N N N -16.103 3.822 29.631 -2.723 -4.636 0.415 H19 KC1 64 KC1 H20 H20 H 0 1 N N N -15.563 3.055 28.099 -4.200 -3.764 -0.061 H20 KC1 65 KC1 H21 H21 H 0 1 N N N -21.364 2.423 26.517 1.581 -5.890 -0.478 H21 KC1 66 KC1 H22 H22 H 0 1 N N N -22.568 2.904 27.760 2.711 -6.059 0.886 H22 KC1 67 KC1 H23 H23 H 0 1 N N N -20.826 3.264 28.010 1.008 -5.640 1.188 H23 KC1 68 KC1 H24 H24 H 0 1 N N N -24.180 -5.648 31.100 6.993 -0.605 -1.166 H24 KC1 69 KC1 H25 H25 H 0 1 N N N -24.620 -3.906 31.116 7.137 0.970 -1.984 H25 KC1 70 KC1 H26 H26 H 0 1 N N N -24.244 -4.723 29.561 7.721 0.778 -0.314 H26 KC1 71 KC1 H27 H27 H 0 1 N N N -16.117 -6.693 32.652 1.048 5.415 -0.638 H27 KC1 72 KC1 H28 H28 H 0 1 N N N -15.708 -5.824 34.170 -0.083 5.612 0.722 H28 KC1 73 KC1 H29 H29 H 0 1 N N N -17.420 -6.208 33.789 1.639 5.288 1.037 H29 KC1 74 KC1 H30 H30 H 0 1 N N N -10.830 2.794 31.414 -8.582 -1.605 -0.452 H30 KC1 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KC1 NB C1B SING N N 1 KC1 NB C4B SING N N 2 KC1 NB MG SING N N 3 KC1 ND C1D SING Y N 4 KC1 ND C4D SING Y N 5 KC1 ND MG SING N N 6 KC1 C1A C2A SING N N 7 KC1 C1A CHA DOUB N Z 8 KC1 C1A NA SING N N 9 KC1 C1B C2B SING N N 10 KC1 C1B CHB DOUB N Z 11 KC1 C1C C2C SING N N 12 KC1 C1C CHC SING N N 13 KC1 C1C NC DOUB N N 14 KC1 C1D C2D DOUB Y N 15 KC1 C1D CHD SING N N 16 KC1 C2A C3A DOUB N N 17 KC1 C2A CAA SING N N 18 KC1 C2B C3B DOUB N N 19 KC1 C2B CMB SING N N 20 KC1 C2C C3C DOUB N N 21 KC1 C2C CMC SING N N 22 KC1 C2D C3D SING Y N 23 KC1 C2D CMD SING N N 24 KC1 C3A C4A SING N N 25 KC1 C3A CMA SING N N 26 KC1 C3B C4B SING N N 27 KC1 C3B CAB SING N N 28 KC1 C3C C4C SING N N 29 KC1 C3C CAC SING N N 30 KC1 C3D C4D DOUB Y N 31 KC1 C3D CAD SING N N 32 KC1 C4A CHB SING N N 33 KC1 C4A NA DOUB N N 34 KC1 C4B CHC DOUB N Z 35 KC1 C4C CHD DOUB N Z 36 KC1 C4C NC SING N N 37 KC1 C4D CHA SING N N 38 KC1 CAA CBA DOUB N E 39 KC1 CAB CBB DOUB N N 40 KC1 CAC CBC SING N N 41 KC1 CAD CBD SING N N 42 KC1 CAD OBD DOUB N N 43 KC1 CBA CGA SING N N 44 KC1 CBD CGD SING N N 45 KC1 CBD CHA SING N N 46 KC1 CED O2D SING N N 47 KC1 CGA O1A DOUB N N 48 KC1 CGA O2A SING N N 49 KC1 CGD O1D DOUB N N 50 KC1 CGD O2D SING N N 51 KC1 CAA H1 SING N N 52 KC1 CAB H2 SING N N 53 KC1 CAC H3 SING N N 54 KC1 CAC H4 SING N N 55 KC1 CBA H5 SING N N 56 KC1 CBB H6 SING N N 57 KC1 CBB H7 SING N N 58 KC1 CBC H8 SING N N 59 KC1 CBC H9 SING N N 60 KC1 CBC H10 SING N N 61 KC1 CBD H11 SING N N 62 KC1 CED H12 SING N N 63 KC1 CED H13 SING N N 64 KC1 CED H14 SING N N 65 KC1 CHB H15 SING N N 66 KC1 CHC H16 SING N N 67 KC1 CHD H17 SING N N 68 KC1 CMA H18 SING N N 69 KC1 CMA H19 SING N N 70 KC1 CMA H20 SING N N 71 KC1 CMB H21 SING N N 72 KC1 CMB H22 SING N N 73 KC1 CMB H23 SING N N 74 KC1 CMC H24 SING N N 75 KC1 CMC H25 SING N N 76 KC1 CMC H26 SING N N 77 KC1 CMD H27 SING N N 78 KC1 CMD H28 SING N N 79 KC1 CMD H29 SING N N 80 KC1 O2A H30 SING N N 81 KC1 NA MG SING N N 82 KC1 NC MG SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KC1 SMILES ACDLabs 12.01 "N16C=3C(=C(C1=CC=7C(=C(C(=Cc2n(c5c(c2C)C(C(C(=O)OC)C5=C4C(=C(C(C=3)=N4)C)\C=C\C(=O)O)=O)[Mg]6)N=7)CC)C)\C=C)C" KC1 InChI InChI 1.03 ;InChI=1S/C35H32N4O5.Mg/c1-8-19-15(3)22-12-24-17(5)21(10-11-28(40)41)32(38-24)30-31(35(43)44-7)34(42)29-18(6)25(39-33(29)30)14-27-20(9-2)16(4)23(37-27)13-26(19)36-22;/h8,10-14,31H,1,9H2,2-7H3,(H3,36,37,38,39,40,41,42);/q;+2/p-2/b11-10+,22-12-,23-13-,24-12-,25-14-,26-13-,27-14-,32-30-;/t31-;/m1./s1 ; KC1 InChIKey InChI 1.03 DGNIJJSSARBJSH-QIEHNWLWSA-L KC1 SMILES_CANONICAL CACTVS 3.385 "CCC\1=C(C)C/2=NC\1=C\c3n4[Mg][N@]/5\C(=C/C6=NC(=C\7[C@@H](C(=O)OC)C(=O)c(c3C)c4\7)/C(=C6C)/C=C/C(O)=O)C(=C(C=C)C/5=C/2)C" KC1 SMILES CACTVS 3.385 "CCC1=C(C)C2=NC1=Cc3n4[Mg][N]5C(=CC6=NC(=C7[CH](C(=O)OC)C(=O)c(c3C)c47)C(=C6C)C=CC(O)=O)C(=C(C=C)C5=C2)C" KC1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC\1=C(c2/cc\3/c(c(c4/n3[Mg]n5c(/cc1\n2)c(c6c5/c(c/7\nc(\c4)C(=C7/C=C/C(=O)O)C)/[C@H](C6=O)C(=O)OC)C)C)C=C)C" KC1 SMILES "OpenEye OEToolkits" 2.0.6 "CCC1=C(c2cc3c(c(c4n3[Mg]n5c(cc1n2)c(c6c5c(c7nc(c4)C(=C7C=CC(=O)O)C)C(C6=O)C(=O)OC)C)C)C=C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KC1 "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-3-[(21R)-9-ethenyl-14-ethyl-21-(methoxycarbonyl)-4,8,13,18-tetramethyl-20-oxo-3,4-didehydrophorbin-3-yl-kappa~2~N~23~,N~25~]prop-2-enoato(2-)magnesium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KC1 "Create component" 2018-10-17 PDBJ KC1 "Modify name" 2018-10-19 PDBJ KC1 "Initial release" 2019-02-06 RCSB #