data_KCR # _chem_comp.id KCR _chem_comp.name N-6-crotonyl-L-lysine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H18 N2 O3" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-03-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KCR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4YYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KCR N N N 0 1 N N N Y Y N -5.674 -23.216 -0.829 3.859 1.675 -0.481 N KCR 1 KCR CA CA C 0 1 N N S Y N N -6.917 -22.729 -0.248 3.789 0.430 0.296 CA KCR 2 KCR CB CB C 0 1 N N N N N N -7.892 -22.367 -1.403 2.540 -0.355 -0.110 CB KCR 3 KCR CG CG C 0 1 N N N N N N -7.333 -21.485 -2.482 1.291 0.436 0.281 CG KCR 4 KCR CD CD C 0 1 N N N N N N -7.026 -20.184 -1.847 0.042 -0.349 -0.125 CD KCR 5 KCR CE CE C 0 1 N N N N N N -6.328 -19.278 -2.844 -1.208 0.443 0.267 CE KCR 6 KCR NZ NZ N 0 1 N N N N N N -7.346 -18.961 -3.866 -2.404 -0.309 -0.122 NZ KCR 7 KCR CH CH C 0 1 N N N N N N -6.995 -18.513 -5.063 -3.628 0.197 0.125 CH KCR 8 KCR OH OH O 0 1 N N N N N N -5.772 -18.290 -5.282 -3.740 1.278 0.671 OH KCR 9 KCR CX CX C 0 1 N N N N N N -8.077 -18.370 -6.107 -4.829 -0.558 -0.265 CX KCR 10 KCR CY CY C 0 1 N N N N N N -7.845 -18.698 -7.420 -6.037 -0.058 -0.021 CY KCR 11 KCR CH3 CH3 C 0 1 N N N N N N -8.817 -18.718 -8.564 -7.267 -0.831 -0.420 CH3 KCR 12 KCR C C C 0 1 N N N Y N Y -7.485 -23.634 0.848 5.016 -0.402 0.023 C KCR 13 KCR O O O 0 1 N N N Y N Y -7.257 -24.853 0.821 5.671 -0.203 -0.973 O KCR 14 KCR OXT O1 O 0 1 N Y N Y N Y -8.111 -23.008 1.854 5.381 -1.363 0.886 O1 KCR 15 KCR H H1 H 0 1 N N N Y Y N -5.034 -23.454 -0.098 3.905 1.482 -1.470 H1 KCR 16 KCR H2 H2 H 0 1 N Y N Y Y N -5.861 -24.026 -1.385 3.079 2.279 -0.267 H2 KCR 17 KCR HA H4 H 0 1 N N N Y N N -6.680 -21.775 0.246 3.740 0.667 1.358 H4 KCR 18 KCR H5 H5 H 0 1 N N N N N N -8.759 -21.853 -0.963 2.546 -0.515 -1.188 H5 KCR 19 KCR H6 H6 H 0 1 N N N N N N -8.222 -23.306 -1.872 2.535 -1.319 0.400 H6 KCR 20 KCR H7 H7 H 0 1 N N N N N N -8.074 -21.351 -3.284 1.285 0.596 1.359 H7 KCR 21 KCR H8 H8 H 0 1 N N N N N N -6.417 -21.929 -2.899 1.296 1.399 -0.229 H8 KCR 22 KCR H9 H9 H 0 1 N N N N N N -6.370 -20.347 -0.980 0.047 -0.509 -1.203 H9 KCR 23 KCR H10 H10 H 0 1 N N N N N N -7.961 -19.710 -1.515 0.036 -1.312 0.386 H10 KCR 24 KCR H11 H11 H 0 1 N N N N N N -5.472 -19.796 -3.301 -1.214 0.603 1.345 H11 KCR 25 KCR H12 H12 H 0 1 N N N N N N -5.979 -18.359 -2.350 -1.202 1.406 -0.244 H12 KCR 26 KCR H13 H13 H 0 1 N N N N N N -8.315 -19.086 -3.652 -2.315 -1.171 -0.557 H13 KCR 27 KCR H14 H14 H 0 1 N N N N N N -9.050 -18.003 -5.816 -4.729 -1.518 -0.749 H14 KCR 28 KCR H15 H15 H 0 1 N N N N N N -6.830 -18.978 -7.661 -6.136 0.902 0.464 H15 KCR 29 KCR H16 H16 H 0 1 N N N N N N -8.297 -19.028 -9.482 -7.261 -0.991 -1.498 H16 KCR 30 KCR H17 H17 H 0 1 N N N N N N -9.628 -19.428 -8.344 -7.273 -1.794 0.090 H17 KCR 31 KCR H18 H18 H 0 1 N N N N N N -9.239 -17.712 -8.704 -8.157 -0.267 -0.142 H18 KCR 32 KCR HXT H19 H 0 1 N Y N Y N Y -8.344 -23.639 2.524 6.175 -1.870 0.668 H19 KCR 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KCR CH3 CY SING N N 1 KCR CY CX DOUB N E 2 KCR CX CH SING N N 3 KCR OH CH DOUB N N 4 KCR CH NZ SING N N 5 KCR NZ CE SING N N 6 KCR CE CD SING N N 7 KCR CG CD SING N N 8 KCR CG CB SING N N 9 KCR CB CA SING N N 10 KCR N CA SING N N 11 KCR CA C SING N N 12 KCR O C DOUB N N 13 KCR C OXT SING N N 14 KCR N H SING N N 15 KCR N H2 SING N N 16 KCR CA HA SING N N 17 KCR CB H5 SING N N 18 KCR CB H6 SING N N 19 KCR CG H7 SING N N 20 KCR CG H8 SING N N 21 KCR CD H9 SING N N 22 KCR CD H10 SING N N 23 KCR CE H11 SING N N 24 KCR CE H12 SING N N 25 KCR NZ H13 SING N N 26 KCR CX H14 SING N N 27 KCR CY H15 SING N N 28 KCR CH3 H16 SING N N 29 KCR CH3 H17 SING N N 30 KCR CH3 H18 SING N N 31 KCR OXT HXT SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KCR SMILES ACDLabs 12.01 "NC(C(O)=O)CCCCNC(=O)[C@H]=[C@H]C" KCR InChI InChI 1.03 "InChI=1S/C10H18N2O3/c1-2-5-9(13)12-7-4-3-6-8(11)10(14)15/h2,5,8H,3-4,6-7,11H2,1H3,(H,12,13)(H,14,15)/b5-2+/t8-/m0/s1" KCR InChIKey InChI 1.03 IZHPCCLNIDDVFG-NCJLJLRUSA-N KCR SMILES_CANONICAL CACTVS 3.385 "C\C=C\C(=O)NCCCC[C@H](N)C(O)=O" KCR SMILES CACTVS 3.385 "CC=CC(=O)NCCCC[CH](N)C(O)=O" KCR SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C/C=C/C(=O)NCCCC[C@@H](C(=O)O)N" KCR SMILES "OpenEye OEToolkits" 1.9.2 "CC=CC(=O)NCCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KCR "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-[(2E)-but-2-enoyl]-L-lysine" KCR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-6-[[(E)-but-2-enoyl]amino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KCR "Create component" 2015-03-26 RCSB KCR "Initial release" 2015-09-16 RCSB KCR "Modify backbone" 2023-11-03 PDBE KCR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KCR _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type Crotonylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0475 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #