data_KD0 # _chem_comp.id KD0 _chem_comp.name "3-deoxy-8-O-phosphono-D-manno-oct-2-ulosonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H15 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-08-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KD0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3E12 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KD0 O4P O4P O 0 1 N N N 30.135 30.381 10.395 -5.630 -0.667 1.337 O4P KD0 1 KD0 P P P 0 1 N N N 31.469 29.497 10.695 -5.259 -0.106 -0.125 P KD0 2 KD0 O2P O2P O 0 1 N N N 31.480 28.221 9.706 -5.340 -1.207 -1.111 O2P KD0 3 KD0 O3P O3P O 0 1 N N N 31.573 29.045 12.117 -6.294 1.057 -0.533 O3P KD0 4 KD0 O1P O1P O 0 1 N N N 32.636 30.411 10.341 -3.763 0.489 -0.108 O1P KD0 5 KD0 C8 C8 C 0 1 N N N 33.902 29.839 10.086 -2.606 -0.319 0.116 C8 KD0 6 KD0 C7 C7 C 0 1 N N R 34.957 30.861 10.529 -1.354 0.558 0.068 C7 KD0 7 KD0 O7 O7 O 0 1 N N N 35.238 30.632 11.905 -1.381 1.488 1.153 O7 KD0 8 KD0 C6 C6 C 0 1 N N R 36.247 30.696 9.717 -0.108 -0.323 0.184 C6 KD0 9 KD0 O6 O6 O 0 1 N N N 36.006 30.943 8.314 -0.081 -1.253 -0.902 O6 KD0 10 KD0 C5 C5 C 0 1 N N R 37.423 31.572 10.217 1.144 0.554 0.135 C5 KD0 11 KD0 O5 O5 O 0 1 N N N 37.103 32.993 10.308 1.120 1.355 -1.048 O5 KD0 12 KD0 C4 C4 C 0 1 N N R 38.585 31.420 9.243 2.389 -0.334 0.125 C4 KD0 13 KD0 O4 O4 O 0 1 N N N 38.923 30.032 9.077 2.414 -1.135 1.309 O4 KD0 14 KD0 C3 C3 C 0 1 N N N 39.804 32.150 9.773 3.642 0.543 0.077 C3 KD0 15 KD0 C1 C1 C 0 1 N N N 40.876 32.334 8.687 4.862 -0.330 -0.057 C1 KD0 16 KD0 O3 O3 O 0 1 N N N 40.725 33.153 7.773 4.743 -1.531 -0.109 O3 KD0 17 KD0 C2 C2 C 0 1 N N N 42.165 31.501 8.746 6.217 0.287 -0.126 C2 KD0 18 KD0 O1 O1 O 0 1 N N N 43.026 31.761 7.849 6.337 1.493 -0.074 O1 KD0 19 KD0 O2 O2 O 0 1 N N N 42.280 30.667 9.698 7.307 -0.493 -0.245 O2 KD0 20 KD0 HO4P HO4P H 0 0 N N N 29.679 30.553 11.210 -5.598 0.002 2.035 HO4P KD0 21 KD0 HO3P HO3P H 0 0 N N N 31.595 28.096 12.147 -7.217 0.769 -0.564 HO3P KD0 22 KD0 H8 H8 H 0 1 N N N 34.018 28.903 10.651 -2.679 -0.795 1.094 H8 KD0 23 KD0 H8A H8A H 0 1 N N N 34.014 29.600 9.018 -2.543 -1.085 -0.657 H8A KD0 24 KD0 H7 H7 H 0 1 N N N 34.574 31.879 10.367 -1.327 1.103 -0.876 H7 KD0 25 KD0 HO7 HO7 H 0 1 N N N 36.178 30.581 12.032 -1.405 1.072 2.026 HO7 KD0 26 KD0 H6 H6 H 0 1 N N N 36.556 29.650 9.864 -0.135 -0.868 1.128 H6 KD0 27 KD0 HO6 HO6 H 0 1 N N N 35.953 31.879 8.161 -0.057 -0.837 -1.775 HO6 KD0 28 KD0 H5 H5 H 0 1 N N N 37.666 31.224 11.232 1.167 1.202 1.012 H5 KD0 29 KD0 HO5 HO5 H 0 1 N N N 37.033 33.245 11.221 1.098 0.843 -1.868 HO5 KD0 30 KD0 H4 H4 H 0 1 N N N 38.279 31.845 8.276 2.366 -0.982 -0.751 H4 KD0 31 KD0 HO4 HO4 H 0 1 N N N 38.998 29.832 8.151 2.435 -0.623 2.129 HO4 KD0 32 KD0 H3 H3 H 0 1 N N N 39.492 33.142 10.133 3.581 1.217 -0.778 H3 KD0 33 KD0 H3A H3A H 0 1 N N N 40.238 31.548 10.585 3.712 1.127 0.995 H3A KD0 34 KD0 HO2 HO2 H 0 1 N N N 43.130 30.245 9.649 8.164 -0.046 -0.286 HO2 KD0 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KD0 O4P P SING N N 1 KD0 O4P HO4P SING N N 2 KD0 O2P P DOUB N N 3 KD0 O1P P SING N N 4 KD0 P O3P SING N N 5 KD0 O3P HO3P SING N N 6 KD0 C8 O1P SING N N 7 KD0 C8 C7 SING N N 8 KD0 C8 H8 SING N N 9 KD0 C8 H8A SING N N 10 KD0 C6 C7 SING N N 11 KD0 C7 O7 SING N N 12 KD0 C7 H7 SING N N 13 KD0 O7 HO7 SING N N 14 KD0 O6 C6 SING N N 15 KD0 C6 C5 SING N N 16 KD0 C6 H6 SING N N 17 KD0 O6 HO6 SING N N 18 KD0 C4 C5 SING N N 19 KD0 C5 O5 SING N N 20 KD0 C5 H5 SING N N 21 KD0 O5 HO5 SING N N 22 KD0 O4 C4 SING N N 23 KD0 C4 C3 SING N N 24 KD0 C4 H4 SING N N 25 KD0 O4 HO4 SING N N 26 KD0 C1 C3 SING N N 27 KD0 C3 H3 SING N N 28 KD0 C3 H3A SING N N 29 KD0 O3 C1 DOUB N N 30 KD0 C1 C2 SING N N 31 KD0 O1 C2 DOUB N N 32 KD0 C2 O2 SING N N 33 KD0 O2 HO2 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KD0 SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)C(O)CC(=O)C(=O)O" KD0 SMILES_CANONICAL CACTVS 3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H](O)CC(=O)C(O)=O" KD0 SMILES CACTVS 3.341 "O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH](O)CC(=O)C(O)=O" KD0 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)O)C(=O)C(=O)O" KD0 SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(C(COP(=O)(O)O)O)O)O)O)C(=O)C(=O)O" KD0 InChI InChI 1.03 "InChI=1S/C8H15O11P/c9-3(1-4(10)8(14)15)6(12)7(13)5(11)2-19-20(16,17)18/h3,5-7,9,11-13H,1-2H2,(H,14,15)(H2,16,17,18)/t3-,5-,6-,7-/m1/s1" KD0 InChIKey InChI 1.03 RTNBXJBOAIDPME-SHUUEZRQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KD0 "SYSTEMATIC NAME" ACDLabs 10.04 "3-deoxy-8-O-phosphono-D-manno-oct-2-ulosonic acid" KD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4R,5R,6R,7R)-4,5,6,7-tetrahydroxy-2-oxo-8-phosphonooxy-octanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KD0 "Create component" 2008-08-06 RCSB KD0 "Modify descriptor" 2011-06-04 RCSB #