data_KD5 # _chem_comp.id KD5 _chem_comp.name "4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H12 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-03-22 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 220.177 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KD5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4E52 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KD5 O5 O5 O 0 1 N Y N 29.549 19.518 -27.487 1.783 -2.603 -1.007 O5 KD5 1 KD5 C4 C4 C 0 1 N N R 30.669 17.526 -26.312 0.229 -0.760 -0.626 C4 KD5 2 KD5 C5 C5 C 0 1 N N S 29.565 18.182 -27.136 1.376 -1.617 -0.057 C5 KD5 3 KD5 C6 C6 C 0 1 N N S 29.454 17.364 -28.424 2.519 -0.603 0.194 C6 KD5 4 KD5 O6 O6 O 0 1 N N N 28.481 16.310 -28.409 3.182 -0.877 1.430 O6 KD5 5 KD5 C7 C7 C 0 1 N N R 30.876 16.854 -28.535 1.750 0.741 0.266 C7 KD5 6 KD5 O7 O7 O 0 1 N N N 31.606 17.373 -27.385 0.710 0.591 -0.727 O7 KD5 7 KD5 O8 O8 O 0 1 N N N 31.350 18.724 -30.032 1.974 3.142 0.095 O8 KD5 8 KD5 C8 C8 C 0 1 N N N 31.424 17.322 -29.879 2.673 1.909 -0.091 C8 KD5 9 KD5 HO5 H1 H 0 1 N Y N 29.617 20.052 -26.704 2.503 -3.171 -0.701 HO5 KD5 10 KD5 H4 H2 H 0 1 N N N 31.024 18.170 -25.494 -0.054 -1.127 -1.612 H4 KD5 11 KD5 H5 H4 H 0 1 N N N 28.634 17.983 -26.585 1.072 -2.090 0.877 H5 KD5 12 KD5 H6 H5 H 0 1 N N N 29.254 18.049 -29.261 3.228 -0.603 -0.634 H6 KD5 13 KD5 HO6 H6 H 0 1 N N N 27.610 16.683 -28.338 3.906 -0.269 1.632 HO6 KD5 14 KD5 H7 H7 H 0 1 N N N 30.870 15.754 -28.512 1.316 0.883 1.256 H7 KD5 15 KD5 HO8 H8 H 0 1 N N N 31.701 18.969 -30.880 2.499 3.926 -0.114 HO8 KD5 16 KD5 H81 H9 H 0 1 N N N 30.841 16.848 -30.683 3.551 1.888 0.553 H81 KD5 17 KD5 H82 H10 H 0 1 N N N 32.477 17.013 -29.958 2.984 1.821 -1.132 H82 KD5 18 KD5 C3 C3 C 0 1 N N N ? ? ? -0.977 -0.813 0.315 C3 KD5 19 KD5 C2 C2 C 0 1 N N N ? ? ? -2.131 -0.068 -0.305 C2 KD5 20 KD5 C1 C1 C 0 1 N N N ? ? ? -3.431 0.027 0.418 C1 KD5 21 KD5 O2 O2 O 0 1 N N N ? ? ? -2.002 0.453 -1.387 O2 KD5 22 KD5 O1B OH O 0 1 N N N ? ? ? -4.461 0.693 -0.135 O1B KD5 23 KD5 O1A O1 O 0 1 N N N ? ? ? -3.560 -0.496 1.505 O1A KD5 24 KD5 H31 H3 H 0 1 N N N ? ? ? -1.262 -1.852 0.481 H31 KD5 25 KD5 H32 H11 H 0 1 N N N ? ? ? -0.715 -0.352 1.267 H32 KD5 26 KD5 HO1B H17 H 0 0 N N N ? ? ? -5.284 0.727 0.371 HO1B KD5 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KD5 O8 C8 SING N N 1 KD5 C8 C7 SING N N 2 KD5 C7 C6 SING N N 3 KD5 C7 O7 SING N N 4 KD5 C6 O6 SING N N 5 KD5 C6 C5 SING N N 6 KD5 O5 C5 SING N N 7 KD5 O7 C4 SING N N 8 KD5 C5 C4 SING N N 9 KD5 O5 HO5 SING N N 10 KD5 C4 H4 SING N N 11 KD5 C5 H5 SING N N 12 KD5 C6 H6 SING N N 13 KD5 O6 HO6 SING N N 14 KD5 C7 H7 SING N N 15 KD5 O8 HO8 SING N N 16 KD5 C8 H81 SING N N 17 KD5 C8 H82 SING N N 18 KD5 C4 C3 SING N N 19 KD5 C3 C2 SING N N 20 KD5 C2 C1 SING N N 21 KD5 C2 O2 DOUB N N 22 KD5 C1 O1B SING N N 23 KD5 C1 O1A DOUB N N 24 KD5 C3 H31 SING N N 25 KD5 C3 H32 SING N N 26 KD5 O1B HO1B SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KD5 SMILES ACDLabs 12.01 "O=C(O)C(=O)CC1OC(CO)C(O)C1O" KD5 InChI InChI 1.03 "InChI=1S/C8H12O7/c9-2-5-7(12)6(11)4(15-5)1-3(10)8(13)14/h4-7,9,11-12H,1-2H2,(H,13,14)/t4?,5-,6-,7-/m1/s1" KD5 InChIKey InChI 1.03 HVHHMEMCULPBED-UVSCYPECSA-N KD5 SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@H](CC(=O)C(O)=O)[C@@H](O)[C@@H]1O" KD5 SMILES CACTVS 3.370 "OC[CH]1O[CH](CC(=O)C(O)=O)[CH](O)[CH]1O" KD5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H]1[C@H]([C@@H]([C@H](O1)CO)O)O)C(=O)C(=O)O" KD5 SMILES "OpenEye OEToolkits" 1.7.6 "C(C1C(C(C(O1)CO)O)O)C(=O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KD5 "SYSTEMATIC NAME" ACDLabs 12.01 "4,7-anhydro-3-deoxy-D-manno-oct-2-ulosonic acid" KD5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(2R,3S,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-2-oxidanylidene-propanoic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support KD5 "CARBOHYDRATE ISOMER" D PDB ? KD5 "CARBOHYDRATE RING" furanose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KD5 "Create component" 2012-03-22 RCSB KD5 "Initial release" 2013-03-27 RCSB KD5 "Other modification" 2020-07-03 RCSB KD5 "Modify internal type" 2020-07-17 RCSB KD5 "Modify linking type" 2020-07-17 RCSB KD5 "Modify atom id" 2020-07-17 RCSB KD5 "Modify component atom id" 2020-07-17 RCSB ##