data_KD7 # _chem_comp.id KD7 _chem_comp.name "N-(3-phenylpropanoyl)-3-(1,3-thiazol-4-yl)-L-alanyl-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-valinamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H42 N8 O4 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-11-20 _chem_comp.pdbx_modified_date 2019-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 678.868 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KD7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6N4T _chem_comp.pdbx_subcomponent_list "HCI KCJ VAL KCM" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KD7 C18 C17 C 0 1 N N N -18.246 -6.883 30.592 4.599 0.114 -0.276 C1 HCI 1 KD7 O19 O2 O 0 1 N N N -18.673 -5.733 30.668 4.741 -0.965 0.258 O1 HCI 2 KD7 C20 C3 C 0 1 N N N -18.473 -7.890 31.696 5.804 0.885 -0.749 C2 HCI 3 KD7 C21 C4 C 0 1 N N N -19.826 -7.693 32.391 7.074 0.090 -0.437 C3 HCI 4 KD7 C22 C5 C 0 1 Y N N -21.019 -7.975 31.498 8.279 0.861 -0.910 "C1'" HCI 5 KD7 C23 C18 C 0 1 Y N N -22.205 -7.273 31.656 8.906 1.753 -0.060 "C2'" HCI 6 KD7 C24 C6 C 0 1 Y N N -23.297 -7.533 30.844 10.011 2.461 -0.494 "C3'" HCI 7 KD7 C25 C19 C 0 1 Y N N -23.218 -8.499 29.866 10.489 2.277 -1.778 "C4'" HCI 8 KD7 C26 C7 C 0 1 Y N N -22.043 -9.195 29.691 9.862 1.385 -2.628 "C5'" HCI 9 KD7 C27 C20 C 0 1 Y N N -20.952 -8.938 30.505 8.760 0.673 -2.192 "C6'" HCI 10 KD7 C13 C1 C 0 1 Y N N -15.926 -4.112 30.179 3.789 0.402 3.144 C13 KCJ 11 KD7 C15 C2 C 0 1 Y N N -14.614 -5.827 32.047 4.494 -1.951 2.988 C15 KCJ 12 KD7 C07 C13 C 0 1 N N N -17.469 -7.314 27.099 0.985 0.283 -0.802 C07 KCJ 13 KD7 C09 C14 C 0 1 N N S -17.250 -6.508 28.382 2.191 -0.131 0.002 C09 KCJ 14 KD7 C11 C15 C 0 1 N N N -15.790 -6.046 28.446 1.940 0.160 1.483 C11 KCJ 15 KD7 C12 C16 C 0 1 Y N N -15.489 -5.541 29.857 3.093 -0.365 2.300 C12 KCJ 16 KD7 N16 N2 N 0 1 Y N N -14.805 -6.496 30.788 3.496 -1.618 2.241 N16 KCJ 17 KD7 N17 N3 N 0 1 N N N -17.555 -7.329 29.538 3.363 0.622 -0.452 N17 KCJ 18 KD7 O08 O1 O 0 1 N N N -16.996 -8.443 26.995 1.095 1.124 -1.669 O08 KCJ 19 KD7 S14 S1 S 0 1 Y N N -15.319 -4.152 31.885 5.034 -0.600 3.886 S14 KCJ 20 KD7 N06 N1 N 0 1 N N N -18.175 -6.735 26.125 -0.214 -0.281 -0.558 N VAL 21 KD7 C04 C12 C 0 1 N N S -18.394 -7.442 24.875 -1.386 0.121 -1.339 CA VAL 22 KD7 C28 C8 C 0 1 N N N -17.066 -7.453 24.118 -2.636 -0.137 -0.539 C VAL 23 KD7 O29 O3 O 0 1 N N N -16.219 -6.592 24.338 -2.624 -0.952 0.359 O VAL 24 KD7 C02 C10 C 0 1 N N N -19.543 -6.852 24.034 -1.435 -0.687 -2.638 CB VAL 25 KD7 C01 C9 C 0 1 N N N -20.860 -6.878 24.799 -2.592 -0.189 -3.505 CG1 VAL 26 KD7 C03 C11 C 0 1 N N N -19.225 -5.444 23.554 -0.117 -0.513 -3.397 CG2 VAL 27 KD7 C31 C21 C 0 1 N N S -15.638 -8.604 22.503 -4.951 0.373 0.028 C31 KCM 28 KD7 C33 C22 C 0 1 N N N -15.055 -9.987 22.788 -5.834 1.617 -0.081 C33 KCM 29 KD7 C34 C23 C 0 1 N N N -14.562 -10.149 24.222 -5.087 2.824 0.491 C34 KCM 30 KD7 C35 C24 C 0 1 N N N -14.188 -11.584 24.582 -5.970 4.069 0.383 C35 KCM 31 KD7 C37 C25 C 0 1 N N N -13.136 -12.671 26.542 -5.855 6.461 0.941 C37 KCM 32 KD7 C40 C26 C 0 1 N N S -15.810 -8.332 21.006 -5.741 -0.855 -0.429 C40 KCM 33 KD7 C42 C27 C 0 1 Y N N -16.227 -6.908 20.663 -4.871 -2.081 -0.322 C42 KCM 34 KD7 C44 C28 C 0 1 Y N N -17.513 -5.047 19.880 -3.794 -3.755 0.726 C44 KCM 35 KD7 C45 C29 C 0 1 Y N N -18.588 -4.321 19.371 -3.323 -4.578 1.769 C45 KCM 36 KD7 C46 C30 C 0 1 Y N N -18.473 -2.947 19.226 -2.529 -5.650 1.497 C46 KCM 37 KD7 C47 C31 C 0 1 Y N N -17.287 -2.301 19.518 -2.167 -5.952 0.192 C47 KCM 38 KD7 C48 C32 C 0 1 Y N N -16.212 -3.007 20.029 -2.611 -5.166 -0.847 C48 KCM 39 KD7 C49 C33 C 0 1 Y N N -16.332 -4.383 20.201 -3.419 -4.061 -0.587 C49 KCM 40 KD7 N30 N4 N 0 1 N N N -16.884 -8.445 23.247 -3.769 0.536 -0.822 N30 KCM 41 KD7 N36 N5 N 0 1 N N N -13.790 -11.495 25.993 -5.256 5.224 0.931 N36 KCM 42 KD7 N38 N6 N 0 1 N N N -12.591 -12.565 27.735 -7.124 6.615 0.436 N38 KCM 43 KD7 N39 N7 N 0 1 N N N -13.115 -13.800 25.862 -5.219 7.489 1.428 N39 KCM 44 KD7 N43 N8 N 0 1 Y N N -17.475 -6.424 20.116 -4.579 -2.662 0.780 N43 KCM 45 KD7 O41 O4 O 0 1 N N N -14.525 -8.412 20.396 -6.894 -1.015 0.400 O41 KCM 46 KD7 S50 S2 S 0 1 Y N N -15.107 -5.475 20.821 -4.158 -2.872 -1.655 S50 KCM 47 KD7 H3 H3 H 0 1 N N N -18.440 -8.902 31.265 5.733 1.048 -1.825 H21 HCI 48 KD7 H4 H4 H 0 1 N N N -17.672 -7.783 32.443 5.844 1.847 -0.239 H22 HCI 49 KD7 H5 H5 H 0 1 N N N -19.890 -6.651 32.737 7.145 -0.072 0.639 H31 HCI 50 KD7 H6 H6 H 0 1 N N N -19.873 -8.370 33.257 7.034 -0.872 -0.948 H32 HCI 51 KD7 H20 H20 H 0 1 N N N -22.278 -6.515 32.421 8.532 1.897 0.943 "H2'" HCI 52 KD7 H7 H7 H 0 1 N N N -24.213 -6.976 30.978 10.501 3.158 0.170 "H3'" HCI 53 KD7 H21 H21 H 0 1 N N N -24.073 -8.709 29.240 11.353 2.830 -2.117 "H4'" HCI 54 KD7 H8 H8 H 0 1 N N N -21.972 -9.944 28.916 10.235 1.242 -3.631 "H5'" HCI 55 KD7 H22 H22 H 0 1 N N N -20.038 -9.495 30.363 8.271 -0.024 -2.856 "H6'" HCI 56 KD7 H1 H1 H 0 1 N N N -16.421 -3.349 29.596 3.622 1.452 3.334 H1 KCJ 57 KD7 H2 H2 H 0 1 N N N -14.141 -6.240 32.926 4.925 -2.940 3.039 H2 KCJ 58 KD7 H17 H17 H 0 1 N N N -17.904 -5.624 28.364 2.369 -1.198 -0.133 H17 KCJ 59 KD7 H18 H18 H 0 1 N N N -15.126 -6.889 28.207 1.850 1.237 1.631 H18 KCJ 60 KD7 H19 H19 H 0 1 N N N -15.628 -5.234 27.721 1.019 -0.328 1.799 H19 KCJ 61 KD7 H36 H36 H 0 1 N N N -17.232 -8.276 29.547 3.249 1.485 -0.880 H36 KCJ 62 KD7 H35 H35 H 0 1 N N N -18.552 -5.818 26.255 -0.301 -0.953 0.136 H VAL 63 KD7 H16 H16 H 0 1 N N N -18.655 -8.486 25.104 -1.318 1.183 -1.575 HA VAL 64 KD7 H12 H12 H 0 1 N N N -19.661 -7.489 23.145 -1.583 -1.741 -2.404 HB VAL 65 KD7 H10 H10 H 0 1 N N N -20.790 -6.213 25.672 -2.675 -0.814 -4.394 HG11 VAL 66 KD7 H11 H11 H 0 1 N N N -21.673 -6.535 24.142 -3.521 -0.241 -2.937 HG12 VAL 67 KD7 H9 H9 H 0 1 N N N -21.069 -7.904 25.136 -2.406 0.843 -3.802 HG13 VAL 68 KD7 H13 H13 H 0 1 N N N -18.272 -5.450 23.005 0.031 0.542 -3.630 HG21 VAL 69 KD7 H14 H14 H 0 1 N N N -20.028 -5.093 22.889 0.707 -0.867 -2.779 HG22 VAL 70 KD7 H15 H15 H 0 1 N N N -19.145 -4.771 24.420 -0.152 -1.088 -4.322 HG23 VAL 71 KD7 H23 H23 H 0 1 N N N -14.919 -7.865 22.885 -4.637 0.239 1.063 H23 KCM 72 KD7 H24 H24 H 0 1 N N N -15.834 -10.740 22.599 -6.074 1.802 -1.128 H24 KCM 73 KD7 H25 H25 H 0 1 N N N -14.208 -10.156 22.106 -6.754 1.460 0.481 H25 KCM 74 KD7 H26 H26 H 0 1 N N N -13.674 -9.514 24.358 -4.847 2.639 1.538 H26 KCM 75 KD7 H27 H27 H 0 1 N N N -15.359 -9.816 24.903 -4.167 2.981 -0.070 H27 KCM 76 KD7 H28 H28 H 0 1 N N N -15.049 -12.257 24.459 -6.210 4.253 -0.664 H28 KCM 77 KD7 H29 H29 H 0 1 N N N -13.353 -11.940 23.960 -6.891 3.911 0.944 H29 KCM 78 KD7 H30 H30 H 0 1 N N N -16.516 -9.053 20.567 -6.054 -0.721 -1.464 H30 KCM 79 KD7 H31 H31 H 0 1 N N N -19.502 -4.824 19.092 -3.594 -4.357 2.791 H31 KCM 80 KD7 H32 H32 H 0 1 N N N -19.321 -2.374 18.880 -2.175 -6.271 2.306 H32 KCM 81 KD7 H33 H33 H 0 1 N N N -17.198 -1.238 19.346 -1.536 -6.806 -0.009 H33 KCM 82 KD7 H34 H34 H 0 1 N N N -15.295 -2.499 20.290 -2.329 -5.402 -1.863 H34 KCM 83 KD7 H37 H37 H 0 1 N N N -17.624 -9.101 23.098 -3.801 1.130 -1.589 H37 KCM 84 KD7 H38 H38 H 0 1 N N N -13.959 -10.676 26.542 -4.360 5.116 1.287 H38 KCM 85 KD7 H39 H39 H 0 1 N N N -12.636 -11.697 28.230 -7.598 5.850 0.073 H39 KCM 86 KD7 H40 H40 H 0 1 N N N -12.132 -13.352 28.147 -7.547 7.488 0.443 H40 KCM 87 KD7 H41 H41 H 0 1 N N N -12.647 -14.529 26.361 -5.641 8.362 1.435 H41 KCM 88 KD7 H42 H42 H 0 1 N N N -14.156 -9.275 20.546 -6.690 -1.139 1.338 H42 KCM 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KD7 C46 C45 DOUB Y N 1 KD7 C46 C47 SING Y N 2 KD7 C45 C44 SING Y N 3 KD7 C47 C48 DOUB Y N 4 KD7 C44 N43 SING Y N 5 KD7 C44 C49 DOUB Y N 6 KD7 C48 C49 SING Y N 7 KD7 N43 C42 DOUB Y N 8 KD7 C49 S50 SING Y N 9 KD7 O41 C40 SING N N 10 KD7 C42 S50 SING Y N 11 KD7 C42 C40 SING N N 12 KD7 C40 C31 SING N N 13 KD7 C31 C33 SING N N 14 KD7 C31 N30 SING N N 15 KD7 C33 C34 SING N N 16 KD7 N30 C28 SING N N 17 KD7 C03 C02 SING N N 18 KD7 C02 C01 SING N N 19 KD7 C02 C04 SING N N 20 KD7 C28 O29 DOUB N N 21 KD7 C28 C04 SING N N 22 KD7 C34 C35 SING N N 23 KD7 C35 N36 SING N N 24 KD7 C04 N06 SING N N 25 KD7 N39 C37 DOUB N N 26 KD7 N36 C37 SING N N 27 KD7 N06 C07 SING N N 28 KD7 C37 N38 SING N N 29 KD7 O08 C07 DOUB N N 30 KD7 C07 C09 SING N N 31 KD7 C09 C11 SING N N 32 KD7 C09 N17 SING N N 33 KD7 C11 C12 SING N N 34 KD7 N17 C18 SING N N 35 KD7 C26 C25 DOUB Y N 36 KD7 C26 C27 SING Y N 37 KD7 C12 C13 DOUB Y N 38 KD7 C12 N16 SING Y N 39 KD7 C25 C24 SING Y N 40 KD7 C13 S14 SING Y N 41 KD7 C27 C22 DOUB Y N 42 KD7 C18 O19 DOUB N N 43 KD7 C18 C20 SING N N 44 KD7 N16 C15 DOUB Y N 45 KD7 C24 C23 DOUB Y N 46 KD7 C22 C23 SING Y N 47 KD7 C22 C21 SING N N 48 KD7 C20 C21 SING N N 49 KD7 S14 C15 SING Y N 50 KD7 C13 H1 SING N N 51 KD7 C15 H2 SING N N 52 KD7 C20 H3 SING N N 53 KD7 C20 H4 SING N N 54 KD7 C21 H5 SING N N 55 KD7 C21 H6 SING N N 56 KD7 C24 H7 SING N N 57 KD7 C26 H8 SING N N 58 KD7 C01 H9 SING N N 59 KD7 C01 H10 SING N N 60 KD7 C01 H11 SING N N 61 KD7 C02 H12 SING N N 62 KD7 C03 H13 SING N N 63 KD7 C03 H14 SING N N 64 KD7 C03 H15 SING N N 65 KD7 C04 H16 SING N N 66 KD7 C09 H17 SING N N 67 KD7 C11 H18 SING N N 68 KD7 C11 H19 SING N N 69 KD7 C23 H20 SING N N 70 KD7 C25 H21 SING N N 71 KD7 C27 H22 SING N N 72 KD7 C31 H23 SING N N 73 KD7 C33 H24 SING N N 74 KD7 C33 H25 SING N N 75 KD7 C34 H26 SING N N 76 KD7 C34 H27 SING N N 77 KD7 C35 H28 SING N N 78 KD7 C35 H29 SING N N 79 KD7 C40 H30 SING N N 80 KD7 C45 H31 SING N N 81 KD7 C46 H32 SING N N 82 KD7 C47 H33 SING N N 83 KD7 C48 H34 SING N N 84 KD7 N06 H35 SING N N 85 KD7 N17 H36 SING N N 86 KD7 N30 H37 SING N N 87 KD7 N36 H38 SING N N 88 KD7 N38 H39 SING N N 89 KD7 N38 H40 SING N N 90 KD7 N39 H41 SING N N 91 KD7 O41 H42 SING N N 92 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KD7 SMILES ACDLabs 12.01 "C(=O)(CCc1ccccc1)NC(C(=O)NC(C(=O)NC(CCCNC(\N)=N)C(c2sc3c(n2)cccc3)O)C(C)C)Cc4cscn4" KD7 InChI InChI 1.03 "InChI=1S/C33H42N8O4S2/c1-20(2)28(41-30(44)25(17-22-18-46-19-37-22)38-27(42)15-14-21-9-4-3-5-10-21)31(45)39-24(12-8-16-36-33(34)35)29(43)32-40-23-11-6-7-13-26(23)47-32/h3-7,9-11,13,18-20,24-25,28-29,43H,8,12,14-17H2,1-2H3,(H,38,42)(H,39,45)(H,41,44)(H4,34,35,36)/t24-,25-,28-,29-/m0/s1" KD7 InChIKey InChI 1.03 AHZGKBJWEMYHLE-NSIYGSDQSA-N KD7 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)[C@H](Cc1cscn1)NC(=O)CCc2ccccc2)C(=O)N[C@@H](CCCNC(N)=N)[C@H](O)c3sc4ccccc4n3" KD7 SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH](Cc1cscn1)NC(=O)CCc2ccccc2)C(=O)N[CH](CCCNC(N)=N)[CH](O)c3sc4ccccc4n3" KD7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(/N)\NCCC[C@@H]([C@@H](c1nc2ccccc2s1)O)NC(=O)[C@H](C(C)C)NC(=O)[C@H](Cc3cscn3)NC(=O)CCc4ccccc4" KD7 SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)C(C(=O)NC(CCCNC(=N)N)C(c1nc2ccccc2s1)O)NC(=O)C(Cc3cscn3)NC(=O)CCc4ccccc4" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KD7 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(3-phenylpropanoyl)-3-(1,3-thiazol-4-yl)-L-alanyl-N-[(1S,2S)-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-hydroxypentan-2-yl]-L-valinamide" KD7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-~{N}-[(1~{S},2~{S})-1-(1,3-benzothiazol-2-yl)-5-carbamimidamido-1-oxidanyl-pentan-2-yl]-3-methyl-2-[[(2~{S})-2-(3-phenylpropanoylamino)-3-(1,3-thiazol-4-yl)propanoyl]amino]butanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KD7 "Create component" 2018-11-20 RCSB KD7 "Initial release" 2019-10-02 RCSB ##