data_KDH # _chem_comp.id KDH _chem_comp.name "(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H18 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(-)-Epigallocatechin-3-gallate; EGCG" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-13 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KDH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KDH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KDH O1 O1 O 0 1 N N N 9.729 8.020 -10.452 1.154 3.389 -2.301 O1 KDH 1 KDH C3 C3 C 0 1 Y N N 8.999 8.949 -9.774 0.308 3.424 -1.236 C3 KDH 2 KDH C6 C6 C 0 1 Y N N 7.912 9.610 -10.446 0.173 4.590 -0.493 C6 KDH 3 KDH O7 O7 O 0 1 N N N 7.629 9.295 -11.747 0.887 5.700 -0.827 O7 KDH 4 KDH C9 C9 C 0 1 Y N N 7.112 10.605 -9.764 -0.693 4.621 0.594 C9 KDH 5 KDH O10 O10 O 0 1 N N N 6.091 11.210 -10.436 -0.829 5.760 1.324 O10 KDH 6 KDH C12 C12 C 0 1 Y N N 7.407 10.940 -8.390 -1.419 3.488 0.931 C12 KDH 7 KDH C14 C14 C 0 1 Y N N 8.491 10.269 -7.706 -1.282 2.330 0.189 C14 KDH 8 KDH C15 C15 C 0 1 N N R 8.719 10.612 -6.366 -2.072 1.102 0.560 C15 KDH 9 KDH C20 C20 C 0 1 Y N N 9.945 9.810 -4.326 -2.932 -0.871 -0.473 C20 KDH 10 KDH C21 C21 C 0 1 Y N N 10.313 8.717 -3.459 -3.603 -1.443 -1.549 C21 KDH 11 KDH C24 C24 C 0 1 Y N N 11.025 8.988 -2.241 -4.135 -2.717 -1.442 C24 KDH 12 KDH C26 C26 C 0 1 Y N N 11.317 10.337 -1.839 -3.997 -3.427 -0.259 C26 KDH 13 KDH C29 C29 C 0 1 Y N N 10.914 11.440 -2.687 -3.330 -2.858 0.813 C29 KDH 14 KDH C31 C31 C 0 1 Y N N 10.167 11.192 -3.898 -2.799 -1.578 0.709 C31 KDH 15 KDH C33 C33 C 0 1 N N R 9.439 11.981 -6.199 -1.222 0.191 1.455 C33 KDH 16 KDH C36 C36 C 0 1 N N N 10.685 12.527 -8.165 1.043 -0.559 1.409 C36 KDH 17 KDH C38 C38 C 0 1 Y N N 11.728 12.110 -8.989 2.246 -1.059 0.717 C38 KDH 18 KDH C39 C39 C 0 1 Y N N 12.201 12.995 -10.038 3.409 -1.331 1.443 C39 KDH 19 KDH C41 C41 C 0 1 Y N N 12.327 10.812 -8.797 2.223 -1.268 -0.664 C41 KDH 20 KDH C01 C01 C 0 1 N N N 9.629 12.273 -4.676 -2.089 -0.988 1.901 C01 KDH 21 KDH O01 O01 O 0 1 N N N 9.389 9.543 -5.573 -2.417 0.378 -0.622 O01 KDH 22 KDH O02 O02 O 0 1 N N N 11.431 7.951 -1.450 -4.790 -3.271 -2.496 O02 KDH 23 KDH O03 O03 O 0 1 N N N 11.242 12.715 -2.336 -3.196 -3.554 1.973 O03 KDH 24 KDH C4 C4 C 0 1 Y N N 9.299 9.278 -8.401 -0.425 2.298 -0.895 C4 KDH 25 KDH O35 O35 O 0 1 N N N 10.710 12.011 -6.896 -0.077 -0.298 0.708 O35 KDH 26 KDH O37 O37 O 0 1 N N N 9.822 13.307 -8.588 1.063 -0.384 2.611 O37 KDH 27 KDH C43 C43 C 0 1 Y N N 13.389 10.379 -9.669 3.351 -1.737 -1.310 C43 KDH 28 KDH O44 O44 O 0 1 N N N 13.974 9.149 -9.527 3.330 -1.939 -2.655 O44 KDH 29 KDH C46 C46 C 0 1 Y N N 13.856 11.252 -10.719 4.511 -2.001 -0.586 C46 KDH 30 KDH O47 O47 O 0 1 N N N 14.857 10.843 -11.549 5.619 -2.462 -1.223 O47 KDH 31 KDH C49 C49 C 0 1 Y N N 13.270 12.566 -10.903 4.535 -1.800 0.792 C49 KDH 32 KDH O50 O50 O 0 1 N N N 13.752 13.369 -11.898 5.667 -2.064 1.498 O50 KDH 33 KDH HO1 HO1 H 0 1 N N N 9.899 8.332 -11.333 2.055 3.117 -2.078 HO1 KDH 34 KDH H21 H21 H 0 1 N N N 10.055 7.702 -3.724 -3.711 -0.890 -2.470 H21 KDH 35 KDH H33 H33 H 0 1 N N N 8.814 12.766 -6.650 -0.882 0.748 2.328 H33 KDH 36 KDH H4 H4 H 0 1 N N N 10.118 8.792 -7.892 -0.324 1.392 -1.475 H4 KDH 37 KDH HO7 HO7 H 0 1 N N N 7.563 10.092 -12.259 0.437 6.282 -1.454 HO7 KDH 38 KDH H01 H01 H 0 1 N N N 8.640 12.518 -4.261 -2.826 -0.643 2.627 H01 KDH 39 KDH H01A H01A H 0 0 N N N 10.364 13.089 -4.612 -1.458 -1.749 2.361 H01A KDH 40 KDH HO03 HO03 H 0 0 N N N 11.318 12.774 -1.391 -2.396 -4.096 2.016 HO03 KDH 41 KDH HO10 HO10 H 0 0 N N N 5.361 11.351 -9.844 -1.525 6.351 1.005 HO10 KDH 42 KDH H12 H12 H 0 1 N N N 6.821 11.688 -7.876 -2.092 3.511 1.776 H12 KDH 43 KDH H15 H15 H 0 1 N N N 7.711 10.722 -5.941 -2.979 1.395 1.089 H15 KDH 44 KDH H26 H26 H 0 1 N N N 11.834 10.527 -0.910 -4.410 -4.422 -0.174 H26 KDH 45 KDH H39 H39 H 0 1 N N N 11.754 13.969 -10.169 3.429 -1.174 2.511 H39 KDH 46 KDH H41 H41 H 0 1 N N N 11.981 10.167 -8.003 1.324 -1.063 -1.227 H41 KDH 47 KDH HO02 HO02 H 0 0 N N N 11.525 7.167 -1.978 -4.220 -3.773 -3.095 HO02 KDH 48 KDH HO44 HO44 H 0 0 N N N 14.109 8.761 -10.384 3.595 -1.167 -3.173 HO44 KDH 49 KDH HO47 HO47 H 0 0 N N N 14.518 10.748 -12.431 6.210 -1.765 -1.537 HO47 KDH 50 KDH HO50 HO50 H 0 0 N N N 13.864 14.252 -11.567 5.721 -2.971 1.828 HO50 KDH 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KDH O1 C3 SING N N 1 KDH O1 HO1 SING N N 2 KDH C3 C6 DOUB Y N 3 KDH C3 C4 SING Y N 4 KDH C6 O7 SING N N 5 KDH C6 C9 SING Y N 6 KDH O7 HO7 SING N N 7 KDH C9 O10 SING N N 8 KDH C9 C12 DOUB Y N 9 KDH O10 HO10 SING N N 10 KDH C12 C14 SING Y N 11 KDH C12 H12 SING N N 12 KDH C14 C15 SING N N 13 KDH C14 C4 DOUB Y N 14 KDH C15 C33 SING N N 15 KDH C15 O01 SING N N 16 KDH C15 H15 SING N N 17 KDH C20 C21 DOUB Y N 18 KDH C20 C31 SING Y N 19 KDH C20 O01 SING N N 20 KDH C21 C24 SING Y N 21 KDH C21 H21 SING N N 22 KDH C24 C26 DOUB Y N 23 KDH C24 O02 SING N N 24 KDH C26 C29 SING Y N 25 KDH C26 H26 SING N N 26 KDH C29 C31 DOUB Y N 27 KDH C29 O03 SING N N 28 KDH C31 C01 SING N N 29 KDH C33 C01 SING N N 30 KDH C33 O35 SING N N 31 KDH C33 H33 SING N N 32 KDH C36 C38 SING N N 33 KDH C36 O35 SING N N 34 KDH C36 O37 DOUB N N 35 KDH C38 C39 DOUB Y N 36 KDH C38 C41 SING Y N 37 KDH C39 C49 SING Y N 38 KDH C39 H39 SING N N 39 KDH C41 C43 DOUB Y N 40 KDH C41 H41 SING N N 41 KDH C01 H01 SING N N 42 KDH C01 H01A SING N N 43 KDH O02 HO02 SING N N 44 KDH O03 HO03 SING N N 45 KDH C4 H4 SING N N 46 KDH C43 O44 SING N N 47 KDH C43 C46 SING Y N 48 KDH O44 HO44 SING N N 49 KDH C46 O47 SING N N 50 KDH C46 C49 DOUB Y N 51 KDH O47 HO47 SING N N 52 KDH C49 O50 SING N N 53 KDH O50 HO50 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KDH SMILES ACDLabs 10.04 "O=C(OC2Cc3c(OC2c1cc(O)c(O)c(O)c1)cc(O)cc3O)c4cc(O)c(O)c(O)c4" KDH SMILES_CANONICAL CACTVS 3.341 "Oc1cc(O)c2C[C@@H](OC(=O)c3cc(O)c(O)c(O)c3)[C@H](Oc2c1)c4cc(O)c(O)c(O)c4" KDH SMILES CACTVS 3.341 "Oc1cc(O)c2C[CH](OC(=O)c3cc(O)c(O)c(O)c3)[CH](Oc2c1)c4cc(O)c(O)c(O)c4" KDH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(cc(c(c1O)O)O)[C@@H]2[C@@H](Cc3c(cc(cc3O2)O)O)OC(=O)c4cc(c(c(c4)O)O)O" KDH SMILES "OpenEye OEToolkits" 1.5.0 "c1c(cc(c(c1O)O)O)C2C(Cc3c(cc(cc3O2)O)O)OC(=O)c4cc(c(c(c4)O)O)O" KDH InChI InChI 1.03 "InChI=1S/C22H18O11/c23-10-5-12(24)11-7-18(33-22(31)9-3-15(27)20(30)16(28)4-9)21(32-17(11)6-10)8-1-13(25)19(29)14(26)2-8/h1-6,18,21,23-30H,7H2/t18-,21-/m1/s1" KDH InChIKey InChI 1.03 WMBWREPUVVBILR-WIYYLYMNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KDH "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate" KDH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)chroman-3-yl] 3,4,5-trihydroxybenzoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KDH "Create component" 2009-01-13 RCSB KDH "Modify descriptor" 2011-06-04 RCSB KDH "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 KDH "(-)-Epigallocatechin-3-gallate" ? ? 2 KDH EGCG ? ? #