data_KDJ # _chem_comp.id KDJ _chem_comp.name "(1,1-difluoro-2-oxo-2-{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]amino}ethyl)phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H19 F2 N O24 P6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-11-26 _chem_comp.pdbx_modified_date 2019-08-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 737.068 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KDJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6N5C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KDJ N15 N1 N 0 1 N N N 1.260 22.316 13.186 -1.663 0.973 0.279 N15 KDJ 1 KDJ C3 C1 C 0 1 N N R -1.098 20.180 11.155 1.996 0.799 -0.694 C3 KDJ 2 KDJ C4 C2 C 0 1 N N S -0.684 21.340 12.053 0.740 1.330 0.001 C4 KDJ 3 KDJ C5 C3 C 0 1 N N N 0.825 21.189 12.374 -0.461 0.465 -0.386 C5 KDJ 4 KDJ C6 C4 C 0 1 N N R 1.671 21.113 11.080 -0.209 -0.980 0.050 C6 KDJ 5 KDJ C1 C5 C 0 1 N N S 1.132 19.998 10.173 1.046 -1.511 -0.645 C1 KDJ 6 KDJ C2 C6 C 0 1 N N N -0.311 20.229 9.842 2.247 -0.646 -0.258 C2 KDJ 7 KDJ O75 O1 O 0 1 N N N 4.458 22.454 16.007 -5.495 1.405 -2.005 O75 KDJ 8 KDJ PB5 P1 P 0 1 N N N 4.048 23.622 15.197 -5.590 0.776 -0.526 PB5 KDJ 9 KDJ O85 O2 O 0 1 N N N 4.304 23.584 13.728 -6.805 1.285 0.149 O85 KDJ 10 KDJ O95 O3 O 0 1 N N N 3.938 24.942 15.883 -5.665 -0.829 -0.629 O95 KDJ 11 KDJ C45 C7 C 0 1 N N N 2.142 23.323 15.166 -4.116 1.255 0.434 C45 KDJ 12 KDJ F55 F1 F 0 1 N N N 1.555 24.384 14.622 -4.050 2.650 0.523 F55 KDJ 13 KDJ F65 F2 F 0 1 N N N 1.643 23.173 16.428 -4.198 0.709 1.719 F65 KDJ 14 KDJ C25 C8 C 0 1 N N N 1.833 22.030 14.353 -2.878 0.738 -0.254 C25 KDJ 15 KDJ O35 O4 O 0 1 N N N 1.949 20.894 14.879 -2.977 0.109 -1.286 O35 KDJ 16 KDJ O14 O5 O 0 1 N N N -1.500 21.335 13.251 0.506 2.680 -0.406 O14 KDJ 17 KDJ PA4 P2 P 0 1 N N N -2.679 22.538 13.463 0.467 3.913 0.628 PA4 KDJ 18 KDJ O34 O6 O 0 1 N N N -1.915 23.584 14.152 1.923 4.105 1.288 O34 KDJ 19 KDJ O44 O7 O 0 1 N N N -3.668 21.774 14.202 0.052 5.257 -0.155 O44 KDJ 20 KDJ O24 O8 O 0 1 N N N -3.214 23.005 12.137 -0.524 3.635 1.691 O24 KDJ 21 KDJ O13 O9 O 0 1 N N N -2.491 20.210 10.831 3.118 1.608 -0.333 O13 KDJ 22 KDJ PA3 P3 P 0 1 N N N -3.481 18.955 11.145 3.997 2.419 -1.410 PA3 KDJ 23 KDJ O33 O10 O 0 1 N N N -2.898 17.855 10.406 4.490 1.486 -2.448 O33 KDJ 24 KDJ O43 O11 O 0 1 N N N -4.815 19.480 10.684 3.087 3.555 -2.099 O43 KDJ 25 KDJ O23 O12 O 0 1 N N N -3.390 18.833 12.637 5.249 3.110 -0.670 O23 KDJ 26 KDJ O12 O13 O 0 1 N N N -0.457 21.489 9.200 2.431 -0.691 1.158 O12 KDJ 27 KDJ PA2 P4 P 0 1 N N N -1.037 21.520 7.651 3.781 -1.231 1.850 PA2 KDJ 28 KDJ O32 O14 O 0 1 N N N -0.720 20.232 7.042 4.942 -0.484 1.318 O32 KDJ 29 KDJ O42 O15 O 0 1 N N N -0.377 22.657 7.082 3.690 -1.017 3.443 O42 KDJ 30 KDJ O22 O16 O 0 1 N N N -2.504 21.648 7.835 3.958 -2.799 1.529 O22 KDJ 31 KDJ O11 O17 O 0 1 N N N 1.895 19.819 8.944 1.281 -2.861 -0.238 O11 KDJ 32 KDJ PA1 P5 P 0 1 N N N 1.931 18.311 8.216 1.319 -4.094 -1.272 PA1 KDJ 33 KDJ O31 O18 O 0 1 N N N 0.654 18.101 7.458 1.475 -5.473 -0.456 O31 KDJ 34 KDJ O41 O19 O 0 1 N N N 3.137 18.542 7.406 0.063 -4.122 -2.053 O41 KDJ 35 KDJ O21 O20 O 0 1 N N N 2.115 17.305 9.325 2.569 -3.918 -2.272 O21 KDJ 36 KDJ O16 O21 O 0 1 N N N 2.991 20.717 11.413 -1.331 -1.788 -0.311 O16 KDJ 37 KDJ PA6 P6 P 0 1 N N N 4.304 21.650 11.115 -2.210 -2.600 0.766 PA6 KDJ 38 KDJ O36 O22 O 0 1 N N N 3.905 23.083 11.271 -3.303 -3.500 -0.001 O36 KDJ 39 KDJ O46 O23 O 0 1 N N N 4.656 21.123 9.777 -1.325 -3.475 1.567 O46 KDJ 40 KDJ O26 O24 O 0 1 N N N 5.159 21.153 12.220 -2.960 -1.560 1.740 O26 KDJ 41 KDJ H1 H1 H 0 1 N N N 1.134 23.260 12.882 -1.585 1.476 1.105 H1 KDJ 42 KDJ H2 H2 H 0 1 N N N -0.857 19.238 11.669 1.856 0.834 -1.774 H2 KDJ 43 KDJ H3 H3 H 0 1 N N N -0.831 22.283 11.505 0.881 1.296 1.081 H3 KDJ 44 KDJ H4 H4 H 0 1 N N N 0.967 20.254 12.936 -0.601 0.500 -1.466 H4 KDJ 45 KDJ H5 H5 H 0 1 N N N 1.648 22.079 10.554 -0.069 -1.015 1.130 H5 KDJ 46 KDJ H6 H6 H 0 1 N N N 1.191 19.061 10.747 0.906 -1.476 -1.725 H6 KDJ 47 KDJ H7 H7 H 0 1 N N N -0.666 19.422 9.185 3.142 -1.024 -0.753 H7 KDJ 48 KDJ H8 H8 H 0 1 N N N 4.853 21.800 15.443 -4.720 1.115 -2.507 H8 KDJ 49 KDJ H9 H9 H 0 1 N N N 4.054 25.640 15.249 -6.426 -1.156 -1.128 H9 KDJ 50 KDJ H10 H10 H 0 1 N N N -1.904 24.371 13.620 2.624 4.291 0.649 H10 KDJ 51 KDJ H11 H11 H 0 1 N N N -4.470 21.719 13.695 0.008 6.043 0.407 H11 KDJ 52 KDJ H12 H12 H 0 1 N N N -5.106 18.986 9.926 2.729 4.203 -1.477 H12 KDJ 53 KDJ H13 H13 H 0 1 N N N -2.948 18.023 12.863 5.823 3.617 -1.260 H13 KDJ 54 KDJ H14 H14 H 0 1 N N N 0.184 22.374 6.370 4.470 -1.320 3.926 H14 KDJ 55 KDJ H15 H15 H 0 1 N N N -2.933 20.862 7.517 3.232 -3.351 1.850 H15 KDJ 56 KDJ H16 H16 H 0 1 N N N 0.827 18.152 6.525 1.505 -6.261 -1.017 H16 KDJ 57 KDJ H17 H17 H 0 1 N N N 3.007 16.980 9.313 3.427 -3.891 -1.827 H17 KDJ 58 KDJ H18 H18 H 0 1 N N N 4.027 23.350 12.175 -3.869 -4.017 0.587 H18 KDJ 59 KDJ H19 H19 H 0 1 N N N 5.813 20.558 11.872 -3.558 -0.954 1.282 H19 KDJ 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KDJ O32 PA2 DOUB N N 1 KDJ O42 PA2 SING N N 2 KDJ O41 PA1 DOUB N N 3 KDJ O31 PA1 SING N N 4 KDJ PA2 O22 SING N N 5 KDJ PA2 O12 SING N N 6 KDJ PA1 O11 SING N N 7 KDJ PA1 O21 SING N N 8 KDJ O11 C1 SING N N 9 KDJ O12 C2 SING N N 10 KDJ O46 PA6 DOUB N N 11 KDJ C2 C1 SING N N 12 KDJ C2 C3 SING N N 13 KDJ C1 C6 SING N N 14 KDJ O33 PA3 DOUB N N 15 KDJ O43 PA3 SING N N 16 KDJ O13 PA3 SING N N 17 KDJ O13 C3 SING N N 18 KDJ C6 O16 SING N N 19 KDJ C6 C5 SING N N 20 KDJ PA6 O36 SING N N 21 KDJ PA6 O16 SING N N 22 KDJ PA6 O26 SING N N 23 KDJ PA3 O23 SING N N 24 KDJ C3 C4 SING N N 25 KDJ C4 C5 SING N N 26 KDJ C4 O14 SING N N 27 KDJ O24 PA4 DOUB N N 28 KDJ C5 N15 SING N N 29 KDJ N15 C25 SING N N 30 KDJ O14 PA4 SING N N 31 KDJ PA4 O34 SING N N 32 KDJ PA4 O44 SING N N 33 KDJ O85 PB5 DOUB N N 34 KDJ C25 O35 DOUB N N 35 KDJ C25 C45 SING N N 36 KDJ F55 C45 SING N N 37 KDJ C45 PB5 SING N N 38 KDJ C45 F65 SING N N 39 KDJ PB5 O95 SING N N 40 KDJ PB5 O75 SING N N 41 KDJ N15 H1 SING N N 42 KDJ C3 H2 SING N N 43 KDJ C4 H3 SING N N 44 KDJ C5 H4 SING N N 45 KDJ C6 H5 SING N N 46 KDJ C1 H6 SING N N 47 KDJ C2 H7 SING N N 48 KDJ O75 H8 SING N N 49 KDJ O95 H9 SING N N 50 KDJ O34 H10 SING N N 51 KDJ O44 H11 SING N N 52 KDJ O43 H12 SING N N 53 KDJ O23 H13 SING N N 54 KDJ O42 H14 SING N N 55 KDJ O22 H15 SING N N 56 KDJ O31 H16 SING N N 57 KDJ O21 H17 SING N N 58 KDJ O36 H18 SING N N 59 KDJ O26 H19 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KDJ SMILES ACDLabs 12.01 "N(C(C(P(O)(O)=O)(F)F)=O)C1C(C(C(C(C1OP(O)(O)=O)OP(O)(O)=O)OP(O)(=O)O)OP(O)(=O)O)OP(O)(O)=O" KDJ InChI InChI 1.03 "InChI=1S/C8H19F2NO24P6/c9-8(10,36(13,14)15)7(12)11-1-2(31-37(16,17)18)4(33-39(22,23)24)6(35-41(28,29)30)5(34-40(25,26)27)3(1)32-38(19,20)21/h1-6H,(H,11,12)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)(H2,28,29,30)/t1-,2-,3+,4+,5-,6+" KDJ InChIKey InChI 1.03 XBHZOGSBYRIXJA-QWBQGLJISA-N KDJ SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)O[C@H]1[C@H](NC(=O)C(F)(F)[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H]1O[P](O)(O)=O" KDJ SMILES CACTVS 3.385 "O[P](O)(=O)O[CH]1[CH](NC(=O)C(F)(F)[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O" KDJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[C@H]1([C@H](C([C@H]([C@@H](C1NC(=O)C(F)(F)P(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O" KDJ SMILES "OpenEye OEToolkits" 2.0.6 "C1(C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)NC(=O)C(F)(F)P(=O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KDJ "SYSTEMATIC NAME" ACDLabs 12.01 "(1,1-difluoro-2-oxo-2-{[(1s,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl]amino}ethyl)phosphonic acid" KDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[1,1-bis(fluoranyl)-2-oxidanylidene-2-[[(2~{S},3~{R},5~{S},6~{R})-2,3,4,5,6-pentaphosphonooxycyclohexyl]amino]ethyl]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KDJ "Create component" 2018-11-26 RCSB KDJ "Initial release" 2019-08-21 RCSB ##