data_KDZ # _chem_comp.id KDZ _chem_comp.name "(3~{R})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 B O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2019-05-14 _chem_comp.pdbx_modified_date 2020-04-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KDZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RPN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KDZ B02 B1 B -1 1 N N N -35.252 -11.013 68.077 -0.628 0.822 0.476 B02 KDZ 1 KDZ C04 C1 C 0 1 N N R -33.934 -11.553 67.360 0.152 -0.439 -0.130 C04 KDZ 2 KDZ C06 C2 C 0 1 N N N -35.035 -12.905 64.929 2.829 0.041 -0.945 C06 KDZ 3 KDZ C07 C3 C 0 1 Y N N -34.877 -13.153 63.427 4.291 0.065 -0.580 C07 KDZ 4 KDZ C08 C4 C 0 1 Y N N -36.009 -13.212 62.626 5.064 -1.068 -0.747 C08 KDZ 5 KDZ C09 C5 C 0 1 Y N N -35.877 -13.437 61.264 6.405 -1.046 -0.412 C09 KDZ 6 KDZ C10 C6 C 0 1 Y N N -34.620 -13.611 60.709 6.972 0.110 0.091 C10 KDZ 7 KDZ C11 C7 C 0 1 Y N N -33.488 -13.559 61.507 6.199 1.243 0.259 C11 KDZ 8 KDZ C12 C8 C 0 1 Y N N -33.615 -13.333 62.871 4.860 1.223 -0.083 C12 KDZ 9 KDZ C13 C9 C 0 1 N N N -32.739 -10.712 67.769 -0.590 -1.703 0.318 C13 KDZ 10 KDZ C14 C10 C 0 1 Y N N -33.179 -9.225 67.686 -2.074 -1.496 0.132 C14 KDZ 11 KDZ C15 C11 C 0 1 Y N N -34.408 -8.891 68.231 -2.612 -0.237 -0.058 C15 KDZ 12 KDZ C16 C12 C 0 1 Y N N -34.904 -7.599 68.178 -4.004 -0.102 -0.220 C16 KDZ 13 KDZ C17 C13 C 0 1 N N N -36.265 -7.300 68.771 -4.596 1.234 -0.418 C17 KDZ 14 KDZ C20 C14 C 0 1 Y N N -34.147 -6.615 67.551 -4.824 -1.230 -0.193 C20 KDZ 15 KDZ C21 C15 C 0 1 Y N N -32.896 -6.948 67.001 -4.267 -2.477 -0.007 C21 KDZ 16 KDZ C22 C16 C 0 1 Y N N -32.418 -8.251 67.058 -2.899 -2.608 0.154 C22 KDZ 17 KDZ O01 O1 O 0 1 N N N -35.967 -12.150 69.003 0.068 1.967 0.204 O01 KDZ 18 KDZ O03 O2 O 0 1 N N N -36.469 -10.738 67.017 -0.761 0.677 1.829 O03 KDZ 19 KDZ O18 O3 O 0 1 N N N -36.716 -8.020 69.710 -5.929 1.364 -0.573 O18 KDZ 20 KDZ O19 O4 O 0 1 N N N -36.948 -6.369 68.250 -3.883 2.217 -0.441 O19 KDZ 21 KDZ O23 O5 O 0 1 N N N -35.156 -9.929 68.862 -1.860 0.887 -0.100 O23 KDZ 22 KDZ S05 S1 S 0 1 N N N -33.973 -11.531 65.483 1.854 -0.469 0.497 S05 KDZ 23 KDZ H1 H1 H 0 1 N N N -33.773 -12.602 67.649 0.159 -0.381 -1.219 H1 KDZ 24 KDZ H2 H2 H 0 1 N N N -36.085 -12.657 65.144 2.517 1.036 -1.262 H2 KDZ 25 KDZ H3 H3 H 0 1 N N N -34.755 -13.818 65.475 2.670 -0.666 -1.760 H3 KDZ 26 KDZ H4 H4 H 0 1 N N N -36.989 -13.083 63.062 4.621 -1.971 -1.140 H4 KDZ 27 KDZ H5 H5 H 0 1 N N N -36.755 -13.477 60.636 7.009 -1.932 -0.542 H5 KDZ 28 KDZ H6 H6 H 0 1 N N N -34.521 -13.788 59.648 8.020 0.127 0.354 H6 KDZ 29 KDZ H7 H7 H 0 1 N N N -32.510 -13.694 61.069 6.642 2.146 0.652 H7 KDZ 30 KDZ H8 H8 H 0 1 N N N -32.737 -13.297 63.498 4.255 2.108 0.048 H8 KDZ 31 KDZ H9 H9 H 0 1 N N N -32.437 -10.960 68.797 -0.262 -2.551 -0.283 H9 KDZ 32 KDZ H10 H10 H 0 1 N N N -31.897 -10.895 67.086 -0.377 -1.897 1.369 H10 KDZ 33 KDZ H11 H11 H 0 1 N N N -34.517 -5.602 67.487 -5.892 -1.127 -0.318 H11 KDZ 34 KDZ H12 H12 H 0 1 N N N -32.300 -6.181 66.529 -4.899 -3.352 0.012 H12 KDZ 35 KDZ H13 H13 H 0 1 N N N -31.464 -8.503 66.618 -2.471 -3.588 0.299 H13 KDZ 36 KDZ H14 H14 H 0 1 N N N -35.369 -12.423 69.689 -0.357 2.772 0.531 H14 KDZ 37 KDZ H15 H15 H 0 1 N N N -37.231 -10.419 67.485 -1.237 1.401 2.258 H15 KDZ 38 KDZ H16 H16 H 0 1 N N N -37.598 -7.743 69.926 -6.270 2.260 -0.700 H16 KDZ 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KDZ C10 C09 DOUB Y N 1 KDZ C10 C11 SING Y N 2 KDZ C09 C08 SING Y N 3 KDZ C11 C12 DOUB Y N 4 KDZ C08 C07 DOUB Y N 5 KDZ C12 C07 SING Y N 6 KDZ C07 C06 SING N N 7 KDZ C06 S05 SING N N 8 KDZ S05 C04 SING N N 9 KDZ C21 C22 DOUB Y N 10 KDZ C21 C20 SING Y N 11 KDZ O03 B02 SING N N 12 KDZ C22 C14 SING Y N 13 KDZ C04 C13 SING N N 14 KDZ C04 B02 SING N N 15 KDZ C20 C16 DOUB Y N 16 KDZ C14 C13 SING N N 17 KDZ C14 C15 DOUB Y N 18 KDZ B02 O23 SING N N 19 KDZ B02 O01 SING N N 20 KDZ C16 C15 SING Y N 21 KDZ C16 C17 SING N N 22 KDZ C15 O23 SING N N 23 KDZ O19 C17 DOUB N N 24 KDZ C17 O18 SING N N 25 KDZ C04 H1 SING N N 26 KDZ C06 H2 SING N N 27 KDZ C06 H3 SING N N 28 KDZ C08 H4 SING N N 29 KDZ C09 H5 SING N N 30 KDZ C10 H6 SING N N 31 KDZ C11 H7 SING N N 32 KDZ C12 H8 SING N N 33 KDZ C13 H9 SING N N 34 KDZ C13 H10 SING N N 35 KDZ C20 H11 SING N N 36 KDZ C21 H12 SING N N 37 KDZ C22 H13 SING N N 38 KDZ O01 H14 SING N N 39 KDZ O03 H15 SING N N 40 KDZ O18 H16 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KDZ InChI InChI 1.03 "InChI=1S/C16H16BO5S/c18-16(19)13-8-4-7-12-9-14(17(20,21)22-15(12)13)23-10-11-5-2-1-3-6-11/h1-8,14,20-21H,9-10H2,(H,18,19)/q-1/t14-/m0/s1" KDZ InChIKey InChI 1.03 NCOFNSDHLWCKKT-AWEZNQCLSA-N KDZ SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1cccc2C[C@H](SCc3ccccc3)[B-](O)(O)Oc12" KDZ SMILES CACTVS 3.385 "OC(=O)c1cccc2C[CH](SCc3ccccc3)[B-](O)(O)Oc12" KDZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1([C@H](Cc2cccc(c2O1)C(=O)O)SCc3ccccc3)(O)O" KDZ SMILES "OpenEye OEToolkits" 2.0.7 "[B-]1(C(Cc2cccc(c2O1)C(=O)O)SCc3ccccc3)(O)O" # _pdbx_chem_comp_identifier.comp_id KDZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R})-3,3-bis(oxidanyl)-4-(phenylmethylsulfanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(6),7,9-triene-10-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KDZ "Create component" 2019-05-14 EBI KDZ "Initial release" 2020-03-25 RCSB KDZ "Modify formal charge" 2020-04-09 PDBE ##