data_KE1 # _chem_comp.id KE1 _chem_comp.name "meropenem, bound form" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(4R,5S)-3-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-11-27 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.478 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KE1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6N6V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KE1 C1 C1 C 0 1 N N R N N N 26.264 10.642 8.104 1.496 0.789 0.260 C1 KE1 1 KE1 C2 C2 C 0 1 N N N N N N 27.128 11.145 6.962 0.919 -0.544 -0.158 C2 KE1 2 KE1 C3 C3 C 0 1 N N N N N N 26.187 12.098 6.325 1.803 -1.514 0.144 C3 KE1 3 KE1 C5 C4 C 0 1 N N S N N N 24.789 10.871 7.698 2.870 0.447 0.863 C5 KE1 4 KE1 C7 C5 C 0 1 N N N N N N 22.924 10.365 6.135 4.043 0.545 -1.320 C7 KE1 5 KE1 C11 C6 C 0 1 N N N N N N 26.671 9.232 8.524 1.659 1.705 -0.955 C11 KE1 6 KE1 C1A C7 C 0 1 N N R N N N 29.168 9.886 5.290 -1.738 -0.292 0.444 C1A KE1 7 KE1 C2A C8 C 0 1 N N N N N N 30.012 10.692 6.266 -1.661 1.231 0.661 C2A KE1 8 KE1 C31 C9 C 0 1 N N N N N N 26.602 13.075 5.323 1.579 -2.886 -0.116 C31 KE1 9 KE1 C4A C10 C 0 1 N N N N N N 29.777 8.487 5.268 -3.215 -0.573 0.082 C4A KE1 10 KE1 C5A C11 C 0 1 N N R N N N 31.004 8.516 6.177 -3.955 0.657 0.664 C5A KE1 11 KE1 C6 C12 C 0 1 N N S N N N 24.087 9.751 6.911 3.986 1.129 0.068 C6 KE1 12 KE1 C61 C13 C 0 1 N N R N N N 23.534 8.601 7.770 5.325 0.902 0.772 C61 KE1 13 KE1 C62 C14 C 0 1 N N N N N N 22.719 9.071 8.972 6.441 1.583 -0.023 C62 KE1 14 KE1 C6A C15 C 0 1 N N N N N N 30.752 7.624 7.379 -5.259 0.883 -0.057 C6A KE1 15 KE1 C8A C16 C 0 1 N N N N N N 31.217 9.152 9.324 -7.608 0.363 -0.440 C8A KE1 16 KE1 C9A C17 C 0 1 N N N N N N 29.524 7.416 9.464 -6.248 -0.880 1.304 C9A KE1 17 KE1 N3A N1 N 0 1 N N N N N N 31.269 9.947 6.450 -3.012 1.775 0.404 N3A KE1 18 KE1 N4 N2 N 0 1 N N N N N N 24.990 11.953 6.722 2.971 -1.016 0.743 N4 KE1 19 KE1 N7A N3 N 0 1 N N N N N N 30.525 8.069 8.630 -6.340 0.144 0.260 N7A KE1 20 KE1 O31 O1 O 0 1 N N N N N N 27.804 13.425 5.282 2.467 -3.808 0.313 O31 KE1 21 KE1 O32 O2 O 0 1 N N N N N N 25.759 13.535 4.527 0.586 -3.236 -0.727 O32 KE1 22 KE1 O62 O3 O 0 1 N N N N N N 22.726 7.733 6.973 5.271 1.456 2.088 O62 KE1 23 KE1 O6A O4 O 0 1 N N N N N N 30.729 6.419 7.170 -5.335 1.730 -0.921 O6A KE1 24 KE1 O7 O5 O 0 1 N N N N N N 23.067 10.368 4.722 4.012 1.273 -2.283 O7 KE1 25 KE1 S21 S1 S 0 1 N N N N N N 27.478 9.841 5.819 -0.652 -0.789 -0.916 S21 KE1 26 KE1 H1 H1 H 0 1 N N N N N N 26.458 11.299 8.965 0.859 1.261 1.008 H1 KE1 27 KE1 H4 H4 H 0 1 N N N N N N 24.185 11.193 8.560 2.911 0.749 1.909 H4 KE1 28 KE1 H5 H5 H 0 1 N N N N N N 22.052 10.770 6.627 4.110 -0.525 -1.454 H5 KE1 29 KE1 H7 H7 H 0 1 N N N N N N 26.029 8.895 9.351 0.680 2.067 -1.271 H7 KE1 30 KE1 H8 H8 H 0 1 N N N N N N 26.557 8.548 7.670 2.291 2.553 -0.689 H8 KE1 31 KE1 H9 H9 H 0 1 N N N N N N 27.721 9.236 8.853 2.121 1.149 -1.770 H9 KE1 32 KE1 H10 H10 H 0 1 N N N N N N 29.193 10.337 4.287 -1.464 -0.818 1.358 H10 KE1 33 KE1 H11 H11 H 0 1 N N N N N N 30.219 11.690 5.854 -1.363 1.445 1.687 H11 KE1 34 KE1 H12 H12 H 0 1 N N N N N N 29.487 10.794 7.227 -0.946 1.669 -0.035 H12 KE1 35 KE1 H13 H13 H 0 1 N N N N N N 29.048 7.753 5.641 -3.344 -0.626 -0.999 H13 KE1 36 KE1 H14 H14 H 0 1 N N N N N N 30.073 8.221 4.243 -3.560 -1.492 0.558 H14 KE1 37 KE1 H15 H15 H 0 1 N N N N N N 31.854 8.102 5.615 -4.121 0.535 1.734 H15 KE1 38 KE1 H16 H16 H 0 1 N N N N N N 24.805 9.331 6.191 3.786 2.198 0.004 H16 KE1 39 KE1 H17 H17 H 0 1 N N N N N N 24.394 8.033 8.153 5.526 -0.168 0.836 H17 KE1 40 KE1 H18 H18 H 0 1 N N N N N N 22.359 8.198 9.535 6.241 2.653 -0.087 H18 KE1 41 KE1 H19 H19 H 0 1 N N N N N N 23.351 9.692 9.623 7.395 1.422 0.479 H19 KE1 42 KE1 H20 H20 H 0 1 N N N N N N 21.860 9.662 8.623 6.482 1.161 -1.027 H20 KE1 43 KE1 H21 H21 H 0 1 N N N N N N 30.797 9.269 10.334 -7.653 -0.279 -1.320 H21 KE1 44 KE1 H22 H22 H 0 1 N N N N N N 32.288 8.914 9.398 -8.438 0.125 0.226 H22 KE1 45 KE1 H23 H23 H 0 1 N N N N N N 31.087 10.089 8.762 -7.678 1.406 -0.748 H23 KE1 46 KE1 H24 H24 H 0 1 N N N N N N 29.480 7.914 10.444 -6.495 -0.437 2.269 H24 KE1 47 KE1 H25 H25 H 0 1 N N N N N N 28.541 7.481 8.975 -6.948 -1.686 1.085 H25 KE1 48 KE1 H26 H26 H 0 1 N N N N N N 29.795 6.359 9.602 -5.234 -1.277 1.335 H26 KE1 49 KE1 H27 H27 H 0 1 N N N N N N 31.594 10.058 7.389 -3.095 2.104 -0.546 H27 KE1 50 KE1 H29 H29 H 0 1 N N N N N N 24.696 12.811 7.144 3.725 -1.553 1.034 H29 KE1 51 KE1 H31 H31 H 0 1 N N N N N N 27.927 14.056 4.582 2.229 -4.718 0.088 H31 KE1 52 KE1 H32 H32 H 0 1 N N N N N N 22.390 7.027 7.513 5.096 2.406 2.108 H32 KE1 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KE1 O32 C31 DOUB N N 1 KE1 O7 C7 DOUB N N 2 KE1 C4A C1A SING N N 3 KE1 C4A C5A SING N N 4 KE1 O31 C31 SING N N 5 KE1 C1A S21 SING N N 6 KE1 C1A C2A SING N N 7 KE1 C31 C3 SING N N 8 KE1 S21 C2 SING N N 9 KE1 C7 C6 SING N N 10 KE1 C5A N3A SING N N 11 KE1 C5A C6A SING N N 12 KE1 C2A N3A SING N N 13 KE1 C3 N4 SING N N 14 KE1 C3 C2 DOUB N N 15 KE1 N4 C5 SING N N 16 KE1 C6 C5 SING N N 17 KE1 C6 C61 SING N N 18 KE1 C2 C1 SING N N 19 KE1 O62 C61 SING N N 20 KE1 O6A C6A DOUB N N 21 KE1 C6A N7A SING N N 22 KE1 C5 C1 SING N N 23 KE1 C61 C62 SING N N 24 KE1 C1 C11 SING N N 25 KE1 N7A C8A SING N N 26 KE1 N7A C9A SING N N 27 KE1 C1 H1 SING N N 28 KE1 C5 H4 SING N N 29 KE1 C7 H5 SING N N 30 KE1 C11 H7 SING N N 31 KE1 C11 H8 SING N N 32 KE1 C11 H9 SING N N 33 KE1 C1A H10 SING N N 34 KE1 C2A H11 SING N N 35 KE1 C2A H12 SING N N 36 KE1 C4A H13 SING N N 37 KE1 C4A H14 SING N N 38 KE1 C5A H15 SING N N 39 KE1 C6 H16 SING N N 40 KE1 C61 H17 SING N N 41 KE1 C62 H18 SING N N 42 KE1 C62 H19 SING N N 43 KE1 C62 H20 SING N N 44 KE1 C8A H21 SING N N 45 KE1 C8A H22 SING N N 46 KE1 C8A H23 SING N N 47 KE1 C9A H24 SING N N 48 KE1 C9A H25 SING N N 49 KE1 C9A H26 SING N N 50 KE1 N3A H27 SING N N 51 KE1 N4 H29 SING N N 52 KE1 O31 H31 SING N N 53 KE1 O62 H32 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KE1 SMILES ACDLabs 12.01 "C1(C)C(=C(NC1C(C=O)C(C)O)C(O)=O)SC2CNC(C2)C(N(C)C)=O" KE1 InChI InChI 1.03 "InChI=1S/C17H27N3O5S/c1-8-13(11(7-21)9(2)22)19-14(17(24)25)15(8)26-10-5-12(18-6-10)16(23)20(3)4/h7-13,18-19,22H,5-6H2,1-4H3,(H,24,25)/t8-,9-,10-,11-,12-,13-/m1/s1" KE1 InChIKey InChI 1.03 DYQHXZPAIVAJRU-PCEBWVJKSA-N KE1 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@@H](C=O)[C@@H]1NC(=C(S[C@H]2CN[C@H](C2)C(=O)N(C)C)[C@@H]1C)C(O)=O" KE1 SMILES CACTVS 3.385 "C[CH](O)[CH](C=O)[CH]1NC(=C(S[CH]2CN[CH](C2)C(=O)N(C)C)[CH]1C)C(O)=O" KE1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1[C@@H](NC(=C1S[C@@H]2C[C@@H](NC2)C(=O)N(C)C)C(=O)O)[C@H](C=O)[C@@H](C)O" KE1 SMILES "OpenEye OEToolkits" 2.0.6 "CC1C(NC(=C1SC2CC(NC2)C(=O)N(C)C)C(=O)O)C(C=O)C(C)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KE1 "SYSTEMATIC NAME" ACDLabs 12.01 "(4R,5S)-3-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid" KE1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},3~{R})-4-[(3~{R},5~{R})-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-2-[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1~{H}-pyrrole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KE1 "Create component" 2018-11-27 RCSB KE1 "Initial release" 2018-12-19 RCSB KE1 "Modify synonyms" 2020-06-05 PDBE KE1 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KE1 _pdbx_chem_comp_synonyms.name "(4R,5S)-3-{[(3R,5R)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KE1 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #