data_KFF # _chem_comp.id KFF _chem_comp.name "(3-{(2S,4S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-[(2-phosphonoethoxy)methyl]pyrrolidin-1-yl}-3-oxopropyl)phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N6 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-11 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.333 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KFF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TS4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KFF C13 C1 C 0 1 N N N N N N 8.577 -16.392 28.438 2.140 3.102 0.329 C13 KFF 1 KFF C20 C2 C 0 1 N N S N N N 6.564 -13.739 23.629 -2.282 -0.711 0.620 C20 KFF 2 KFF C22 C3 C 0 1 Y N N N N N 4.888 -12.106 24.019 -3.377 -1.508 -1.510 C22 KFF 3 KFF C24 C4 C 0 1 Y N N N N N 6.767 -11.356 23.191 -4.747 -0.801 0.065 C24 KFF 4 KFF C26 C5 C 0 1 N N N N N N 6.354 -8.869 22.980 -6.886 -1.112 -1.021 C26 KFF 5 KFF C28 C6 C 0 1 N N N N N N 8.591 -9.801 22.269 -6.704 -0.255 1.164 C28 KFF 6 KFF C05 C7 C 0 1 N N N N N N 11.994 -12.763 23.852 4.798 -1.698 0.601 C05 KFF 7 KFF C06 C8 C 0 1 N N N N N N 11.659 -14.229 23.571 3.483 -2.318 0.126 C06 KFF 8 KFF C08 C9 C 0 1 N N N N N N 9.670 -15.410 22.863 1.104 -2.141 0.360 C08 KFF 9 KFF C09 C10 C 0 1 N N S N N N 8.175 -15.375 23.184 0.011 -1.342 1.072 C09 KFF 10 KFF C11 C11 C 0 1 N N N N N N 8.478 -15.876 25.953 1.009 0.921 0.659 C11 KFF 11 KFF C12 C12 C 0 1 N N N N N N 8.303 -15.324 27.390 0.852 2.310 0.097 C12 KFF 12 KFF C19 C13 C 0 1 N N N N N N 7.571 -13.786 24.899 -1.318 0.300 -0.051 C19 KFF 13 KFF C25 C14 C 0 1 Y N N N N N 5.905 -10.306 23.370 -5.475 -1.204 -1.060 C25 KFF 14 KFF C32 C15 C 0 1 N N N N N N 7.502 -14.394 22.538 -1.371 -1.958 0.769 C32 KFF 15 KFF N10 N1 N 0 1 N N N N N N 8.091 -15.008 24.824 -0.007 0.039 0.569 N10 KFF 16 KFF N21 N2 N 0 1 Y N N N N N 6.119 -12.448 23.584 -3.429 -0.997 -0.246 N21 KFF 17 KFF N23 N3 N 0 1 Y N N N N N 4.761 -10.795 23.876 -4.582 -1.629 -1.986 N23 KFF 18 KFF N27 N4 N 0 1 N N N N N N 7.687 -8.669 22.457 -7.468 -0.637 0.103 N27 KFF 19 KFF N29 N5 N 0 1 N N N N N N 9.956 -9.592 21.709 -7.322 0.223 2.293 N29 KFF 20 KFF N30 N6 N 0 1 N N N N N N 8.170 -11.153 22.631 -5.392 -0.335 1.141 N30 KFF 21 KFF O01 O1 O 0 1 N N N N N N 13.967 -11.191 24.724 6.095 -4.017 0.096 O01 KFF 22 KFF O03 O2 O 0 1 N N N N N N 13.311 -13.139 26.177 6.160 -2.321 -1.772 O03 KFF 23 KFF O04 O3 O 0 1 N N N N N N 14.665 -13.496 24.136 7.581 -2.002 0.417 O04 KFF 24 KFF O07 O4 O 0 1 N N N N N N 10.277 -14.398 23.656 2.386 -1.637 0.738 O07 KFF 25 KFF O15 O5 O 0 1 N N N N N N 6.407 -16.167 30.237 1.559 4.698 -1.775 O15 KFF 26 KFF O16 O6 O 0 1 N N N N N N 7.112 -18.428 29.320 0.813 5.570 0.473 O16 KFF 27 KFF O17 O7 O 0 1 N N N N N N 5.844 -16.768 27.946 3.348 5.574 -0.225 O17 KFF 28 KFF O18 O8 O 0 1 N N N N N N 8.910 -16.952 25.747 2.048 0.596 1.193 O18 KFF 29 KFF O31 O9 O 0 1 N N N N N N 5.625 -7.956 23.130 -7.561 -1.451 -1.979 O31 KFF 30 KFF P02 P1 P 0 1 N N N N N N 13.584 -12.643 24.747 6.197 -2.567 -0.181 P02 KFF 31 KFF P14 P2 P 0 1 N N N N N N 6.893 -16.947 29.055 1.951 4.783 -0.351 P14 KFF 32 KFF H131 H1 H 0 0 N N N N N N 9.119 -17.238 27.990 2.342 3.164 1.399 H131 KFF 33 KFF H132 H2 H 0 0 N N N N N N 9.169 -15.974 29.265 2.970 2.601 -0.168 H132 KFF 34 KFF H201 H3 H 0 0 N N N N N N 5.738 -14.436 23.833 -2.611 -0.349 1.594 H201 KFF 35 KFF H221 H4 H 0 0 N N N N N N 4.141 -12.780 24.413 -2.472 -1.769 -2.039 H221 KFF 36 KFF H052 H5 H 0 0 N N N N N N 11.197 -12.319 24.466 4.824 -0.644 0.323 H052 KFF 37 KFF H051 H6 H 0 0 N N N N N N 12.070 -12.218 22.899 4.873 -1.790 1.684 H051 KFF 38 KFF H062 H7 H 0 0 N N N N N N 12.003 -14.500 22.562 3.408 -2.226 -0.958 H062 KFF 39 KFF H061 H8 H 0 0 N N N N N N 12.156 -14.871 24.313 3.457 -3.372 0.403 H061 KFF 40 KFF H082 H9 H 0 0 N N N N N N 9.834 -15.205 21.795 1.029 -3.192 0.642 H082 KFF 41 KFF H081 H10 H 0 0 N N N N N N 10.090 -16.394 23.116 0.980 -2.046 -0.719 H081 KFF 42 KFF H091 H11 H 0 0 N N N N N N 7.732 -16.370 23.031 0.191 -1.345 2.147 H091 KFF 43 KFF H122 H12 H 0 0 N N N N N N 7.271 -14.962 27.510 0.022 2.812 0.595 H122 KFF 44 KFF H121 H13 H 0 0 N N N N N N 9.004 -14.489 27.539 0.651 2.249 -0.972 H121 KFF 45 KFF H192 H14 H 0 0 N N N N N N 7.024 -13.647 25.843 -1.272 0.123 -1.126 H192 KFF 46 KFF H191 H15 H 0 0 N N N N N N 8.353 -13.018 24.812 -1.638 1.322 0.153 H191 KFF 47 KFF H322 H16 H 0 0 N N N N N N 6.902 -14.815 21.717 -1.705 -2.582 1.598 H322 KFF 48 KFF H321 H17 H 0 0 N N N N N N 8.203 -13.648 22.135 -1.344 -2.529 -0.159 H321 KFF 49 KFF H271 H18 H 0 0 N N N N N N 7.993 -7.747 22.222 -8.434 -0.568 0.154 H271 KFF 50 KFF H292 H19 H 0 0 N N N N N N 10.570 -10.371 21.585 -8.289 0.285 2.326 H292 KFF 51 KFF H291 H20 H 0 0 N N N N N N 10.258 -8.673 21.457 -6.791 0.499 3.056 H291 KFF 52 KFF H1 H21 H 0 1 N N N N N N 13.437 -12.424 26.790 6.223 -1.390 -2.028 H1 KFF 53 KFF H2 H22 H 0 1 N N N N N N 15.384 -12.943 23.853 8.370 -2.421 0.045 H2 KFF 54 KFF H3 H23 H 0 1 N N N N N N 6.897 -18.623 30.224 1.004 5.664 1.416 H3 KFF 55 KFF H4 H24 H 0 1 N N N N N N 5.141 -16.213 28.261 3.321 6.477 -0.568 H4 KFF 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KFF P02 O01 DOUB N N 1 KFF O03 P02 SING N N 2 KFF O04 P02 SING N N 3 KFF C05 P02 SING N N 4 KFF C06 C05 SING N N 5 KFF O07 C06 SING N N 6 KFF C08 O07 SING N N 7 KFF C09 C08 SING N N 8 KFF N10 C09 SING N N 9 KFF C13 C12 SING N N 10 KFF P14 C13 SING N N 11 KFF O15 P14 DOUB N N 12 KFF O16 P14 SING N N 13 KFF O17 P14 SING N N 14 KFF C12 C11 SING N N 15 KFF O18 C11 DOUB N N 16 KFF C11 N10 SING N N 17 KFF C19 N10 SING N N 18 KFF C20 C19 SING N N 19 KFF N23 C22 DOUB Y N 20 KFF C22 N21 SING Y N 21 KFF C24 N21 SING Y N 22 KFF C25 C24 DOUB Y N 23 KFF C26 C25 SING N N 24 KFF C28 N27 SING N N 25 KFF N29 C28 SING N N 26 KFF N30 C28 DOUB N N 27 KFF N27 C26 SING N N 28 KFF O31 C26 DOUB N N 29 KFF N21 C20 SING N N 30 KFF C32 C20 SING N N 31 KFF C09 C32 SING N N 32 KFF N23 C25 SING Y N 33 KFF C24 N30 SING N N 34 KFF C13 H131 SING N N 35 KFF C13 H132 SING N N 36 KFF C20 H201 SING N N 37 KFF C22 H221 SING N N 38 KFF C05 H052 SING N N 39 KFF C05 H051 SING N N 40 KFF C06 H062 SING N N 41 KFF C06 H061 SING N N 42 KFF C08 H082 SING N N 43 KFF C08 H081 SING N N 44 KFF C09 H091 SING N N 45 KFF C12 H122 SING N N 46 KFF C12 H121 SING N N 47 KFF C19 H192 SING N N 48 KFF C19 H191 SING N N 49 KFF C32 H322 SING N N 50 KFF C32 H321 SING N N 51 KFF N27 H271 SING N N 52 KFF N29 H292 SING N N 53 KFF N29 H291 SING N N 54 KFF O03 H1 SING N N 55 KFF O04 H2 SING N N 56 KFF O16 H3 SING N N 57 KFF O17 H4 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KFF SMILES ACDLabs 12.01 "O=C(CCP(=O)(O)O)N1CC(CC1COCCP(=O)(O)O)n1cnc2c1N=C(N)NC2=O" KFF InChI InChI 1.06 "InChI=1S/C15H24N6O9P2/c16-15-18-13-12(14(23)19-15)17-8-21(13)9-5-10(7-30-2-4-32(27,28)29)20(6-9)11(22)1-3-31(24,25)26/h8-10H,1-7H2,(H2,24,25,26)(H2,27,28,29)(H3,16,18,19,23)/t9-,10-/m0/s1" KFF InChIKey InChI 1.06 APDUDHYPFAMPGN-UWVGGRQHSA-N KFF SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@@H](COCC[P](O)(O)=O)N(C3)C(=O)CC[P](O)(O)=O" KFF SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](COCC[P](O)(O)=O)N(C3)C(=O)CC[P](O)(O)=O" KFF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3C[C@H](N(C3)C(=O)CCP(=O)(O)O)COCCP(=O)(O)O)N=C(NC2=O)N" KFF SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(N(C3)C(=O)CCP(=O)(O)O)COCCP(=O)(O)O)N=C(NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KFF "SYSTEMATIC NAME" ACDLabs 12.01 "(3-{(2S,4S)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-[(2-phosphonoethoxy)methyl]pyrrolidin-1-yl}-3-oxopropyl)phosphonic acid" KFF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3-[(2~{S},4~{S})-4-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-(2-phosphonoethoxymethyl)pyrrolidin-1-yl]-3-oxidanylidene-propyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KFF "Create component" 2023-08-11 RCSB KFF "Initial release" 2024-05-08 RCSB #