data_KG6 # _chem_comp.id KG6 _chem_comp.name "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N13 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 697.659 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KG6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZ9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KG6 N1 N1 N 0 1 N N N 14.106 9.386 12.027 1.913 1.914 -2.369 N1 KG6 1 KG6 C7 C1 C 0 1 Y N N 21.462 12.920 11.879 -4.397 4.195 2.563 C7 KG6 2 KG6 C8 C2 C 0 1 Y N N 22.859 11.359 12.877 -5.377 2.132 2.897 C8 KG6 3 KG6 N2 N2 N 0 1 Y N N 19.004 12.316 12.229 -2.350 4.020 1.063 N2 KG6 4 KG6 C9 C3 C 0 1 Y N N 20.688 11.029 13.103 -3.505 2.188 1.564 C9 KG6 5 KG6 O1 O1 O 0 1 N N N 16.181 4.572 13.469 -6.862 -3.199 0.271 O1 KG6 6 KG6 C1 C4 C 0 1 N N N 12.844 8.755 12.449 0.991 1.483 -3.428 C1 KG6 7 KG6 O5 O2 O 0 1 N N N 19.247 9.852 16.481 -0.246 -0.232 1.670 O5 KG6 8 KG6 C5 C5 C 0 1 Y N N 18.499 11.268 12.850 -1.769 3.006 0.465 C5 KG6 9 KG6 C6 C6 C 0 1 Y N N 20.382 12.166 12.369 -3.424 3.579 1.754 C6 KG6 10 KG6 N3 N3 N 0 1 N N N 21.321 14.050 11.155 -4.373 5.561 2.783 N3 KG6 11 KG6 C4 C7 C 0 1 N N N 17.111 10.961 12.888 -0.600 3.093 -0.357 C4 KG6 12 KG6 O4 O3 O 0 1 N N N 19.403 7.171 16.161 -0.796 -2.410 0.358 O4 KG6 13 KG6 C3 C8 C 0 1 N N N 15.930 10.798 12.895 0.359 3.164 -1.031 C3 KG6 14 KG6 O3 O4 O 0 1 N N N 13.331 5.562 11.670 -9.866 -3.180 -2.337 O3 KG6 15 KG6 C2 C9 C 0 1 N N N 14.495 10.465 12.930 1.561 3.253 -1.877 C2 KG6 16 KG6 N4 N4 N 0 1 Y N N 22.709 12.478 12.153 -5.343 3.436 3.105 N4 KG6 17 KG6 N N5 N 0 1 N N N 11.716 7.729 14.436 0.115 -0.478 -4.605 N KG6 18 KG6 C C10 C 0 1 N N N 12.987 7.929 13.716 1.118 -0.028 -3.631 C KG6 19 KG6 O O5 O 0 1 N N N 18.794 8.169 13.375 -3.305 -0.168 -0.211 O KG6 20 KG6 C10 C11 C 0 1 N N R 19.329 9.210 14.178 -2.122 0.506 0.270 C10 KG6 21 KG6 C11 C12 C 0 1 N N R 17.994 7.294 14.206 -3.028 -1.578 -0.177 C11 KG6 22 KG6 C12 C13 C 0 1 N N N 16.544 7.350 13.769 -4.303 -2.351 0.164 C12 KG6 23 KG6 C13 C14 C 0 1 N N N 16.002 5.312 12.504 -6.534 -2.662 -0.766 C13 KG6 24 KG6 C14 C15 C 0 1 N N N 15.538 4.762 11.172 -7.514 -2.562 -1.906 C14 KG6 25 KG6 C15 C16 C 0 1 N N N 14.066 4.959 10.901 -8.866 -3.047 -1.450 C15 KG6 26 KG6 C16 C17 C 0 1 N N S 18.228 7.772 15.644 -1.967 -1.810 0.916 C16 KG6 27 KG6 C17 C18 C 0 1 N N R 18.472 9.267 15.440 -1.648 -0.389 1.443 C17 KG6 28 KG6 C18 C19 C 0 1 N N N 14.053 9.783 10.608 3.306 1.875 -2.835 C18 KG6 29 KG6 C19 C20 C 0 1 N N R 15.415 9.680 9.942 4.248 1.941 -1.632 C19 KG6 30 KG6 C20 C21 C 0 1 N N R 16.933 8.232 9.016 5.330 0.453 -0.225 C20 KG6 31 KG6 C21 C22 C 0 1 N N R 16.714 9.329 7.965 6.309 0.659 -1.409 C21 KG6 32 KG6 C22 C23 C 0 1 N N S 15.443 10.038 8.458 5.713 1.903 -2.111 C22 KG6 33 KG6 C23 C24 C 0 1 Y N N 16.007 6.215 7.758 4.534 -1.942 -0.233 C23 KG6 34 KG6 C24 C25 C 0 1 Y N N 17.739 4.982 7.668 5.813 -2.838 1.272 C24 KG6 35 KG6 C25 C26 C 0 1 Y N N 18.753 4.028 7.432 6.511 -3.643 2.188 C25 KG6 36 KG6 C26 C27 C 0 1 Y N N 20.182 5.415 8.611 7.773 -1.805 2.788 C26 KG6 37 KG6 C27 C28 C 0 1 Y N N 18.100 6.103 8.402 6.169 -1.482 1.174 C27 KG6 38 KG6 N10 N6 N 0 1 N N N 18.556 2.853 6.808 6.205 -4.985 2.328 N10 KG6 39 KG6 N11 N7 N 0 1 Y N N 19.984 4.296 7.908 7.473 -3.085 2.916 N11 KG6 40 KG6 N12 N8 N 0 1 Y N N 19.310 6.377 8.915 7.145 -1.014 1.944 N12 KG6 41 KG6 N5 N9 N 0 1 Y N N 21.911 10.569 13.401 -4.489 1.512 2.148 N5 KG6 42 KG6 N6 N10 N 0 1 Y N N 19.475 10.449 13.418 -2.453 1.850 0.748 N6 KG6 43 KG6 N7 N11 N 0 1 N N N 16.234 6.624 12.544 -5.293 -2.154 -0.899 N7 KG6 44 KG6 N8 N12 N 0 1 Y N N 16.982 6.897 8.446 5.342 -0.942 0.222 N8 KG6 45 KG6 N9 N13 N 0 1 Y N N 16.412 5.066 7.263 4.812 -3.053 0.384 N9 KG6 46 KG6 O2 O6 O 0 1 N N N 13.653 4.413 9.760 -9.050 -3.317 -0.287 O2 KG6 47 KG6 O6 O7 O 0 1 N N N 15.876 8.314 9.964 4.045 0.795 -0.788 O6 KG6 48 KG6 O7 O8 O 0 1 N N N 17.850 10.189 7.979 7.631 0.925 -0.936 O7 KG6 49 KG6 O8 O9 O 0 1 N N N 15.545 11.442 8.269 6.403 3.086 -1.703 O8 KG6 50 KG6 H2 H2 H 0 1 N N N 23.878 11.054 13.062 -6.163 1.553 3.358 H2 KG6 51 KG6 H3 H3 H 0 1 N N N 12.100 9.545 12.628 -0.032 1.726 -3.141 H3 KG6 52 KG6 H4 H4 H 0 1 N N N 12.493 8.098 11.640 1.239 1.996 -4.357 H4 KG6 53 KG6 H5 H5 H 0 1 N N N 18.729 9.896 17.276 0.098 -0.772 2.395 H5 KG6 54 KG6 H6 H6 H 0 1 N N N 22.224 14.409 10.918 -5.052 5.975 3.339 H6 KG6 55 KG6 H7 H7 H 0 1 N N N 20.812 13.848 10.318 -3.677 6.105 2.381 H7 KG6 56 KG6 H8 H8 H 0 1 N N N 19.546 7.469 17.052 -0.095 -2.579 1.002 H8 KG6 57 KG6 H9 H9 H 0 1 N N N 12.447 5.571 11.322 -10.715 -3.495 -1.997 H9 KG6 58 KG6 H10 H10 H 0 1 N N N 13.926 11.365 12.656 2.388 3.654 -1.291 H10 KG6 59 KG6 H11 H11 H 0 1 N N N 14.236 10.166 13.956 1.362 3.910 -2.723 H11 KG6 60 KG6 H12 H12 H 0 1 N N N 11.880 7.180 15.256 0.205 0.026 -5.475 H12 KG6 61 KG6 H13 H13 H 0 1 N N N 11.339 8.617 14.699 0.178 -1.473 -4.756 H13 KG6 62 KG6 H15 H15 H 0 1 N N N 13.392 6.943 13.445 2.116 -0.263 -4.001 H15 KG6 63 KG6 H16 H16 H 0 1 N N N 13.691 8.442 14.388 0.955 -0.537 -2.680 H16 KG6 64 KG6 H17 H17 H 0 1 N N N 20.336 8.903 14.498 -1.362 0.551 -0.510 H17 KG6 65 KG6 H18 H18 H 0 1 N N N 18.355 6.259 14.115 -2.642 -1.904 -1.143 H18 KG6 66 KG6 H19 H19 H 0 1 N N N 16.276 8.406 13.615 -4.072 -3.412 0.253 H19 KG6 67 KG6 H20 H20 H 0 1 N N N 15.929 6.929 14.578 -4.707 -1.987 1.109 H20 KG6 68 KG6 H21 H21 H 0 1 N N N 15.751 3.683 11.151 -7.591 -1.524 -2.230 H21 KG6 69 KG6 H22 H22 H 0 1 N N N 16.106 5.264 10.375 -7.169 -3.177 -2.737 H22 KG6 70 KG6 H23 H23 H 0 1 N N N 17.342 7.594 16.271 -2.371 -2.433 1.714 H23 KG6 71 KG6 H24 H24 H 0 1 N N N 17.529 9.803 15.257 -2.214 -0.175 2.350 H24 KG6 72 KG6 H25 H25 H 0 1 N N N 13.702 10.824 10.542 3.479 0.948 -3.382 H25 KG6 73 KG6 H26 H26 H 0 1 N N N 13.348 9.124 10.080 3.493 2.725 -3.491 H26 KG6 74 KG6 H27 H27 H 0 1 N N N 16.125 10.327 10.478 4.064 2.855 -1.067 H27 KG6 75 KG6 H28 H28 H 0 1 N N N 17.889 8.437 9.521 5.578 1.121 0.599 H28 KG6 76 KG6 H29 H29 H 0 1 N N N 16.545 8.883 6.974 6.302 -0.204 -2.075 H29 KG6 77 KG6 H30 H30 H 0 1 N N N 14.560 9.622 7.951 5.757 1.788 -3.194 H30 KG6 78 KG6 H31 H31 H 0 1 N N N 15.001 6.588 7.635 3.773 -1.827 -0.990 H31 KG6 79 KG6 H32 H32 H 0 1 N N N 21.185 5.560 8.984 8.562 -1.393 3.399 H32 KG6 80 KG6 H33 H33 H 0 1 N N N 19.410 2.334 6.797 5.501 -5.381 1.791 H33 KG6 81 KG6 H34 H34 H 0 1 N N N 17.855 2.331 7.294 6.695 -5.530 2.964 H34 KG6 82 KG6 H35 H35 H 0 1 N N N 16.193 7.138 11.687 -5.054 -1.658 -1.697 H35 KG6 83 KG6 H36 H36 H 0 1 N N N 18.612 9.714 7.668 8.261 1.149 -1.635 H36 KG6 84 KG6 H37 H37 H 0 1 N N N 14.751 11.862 8.579 7.343 3.090 -1.928 H37 KG6 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KG6 N10 C25 SING N N 1 KG6 N9 C24 SING Y N 2 KG6 N9 C23 DOUB Y N 3 KG6 C25 C24 DOUB Y N 4 KG6 C25 N11 SING Y N 5 KG6 C24 C27 SING Y N 6 KG6 C23 N8 SING Y N 7 KG6 N11 C26 DOUB Y N 8 KG6 C21 O7 SING N N 9 KG6 C21 C22 SING N N 10 KG6 C21 C20 SING N N 11 KG6 O8 C22 SING N N 12 KG6 C27 N8 SING Y N 13 KG6 C27 N12 DOUB Y N 14 KG6 N8 C20 SING N N 15 KG6 C22 C19 SING N N 16 KG6 C26 N12 SING Y N 17 KG6 C20 O6 SING N N 18 KG6 O2 C15 DOUB N N 19 KG6 C19 O6 SING N N 20 KG6 C19 C18 SING N N 21 KG6 C18 N1 SING N N 22 KG6 C15 C14 SING N N 23 KG6 C15 O3 SING N N 24 KG6 N3 C7 SING N N 25 KG6 C14 C13 SING N N 26 KG6 C7 N4 DOUB Y N 27 KG6 C7 C6 SING Y N 28 KG6 N1 C1 SING N N 29 KG6 N1 C2 SING N N 30 KG6 N4 C8 SING Y N 31 KG6 N2 C6 SING Y N 32 KG6 N2 C5 DOUB Y N 33 KG6 C6 C9 DOUB Y N 34 KG6 C1 C SING N N 35 KG6 C13 N7 SING N N 36 KG6 C13 O1 DOUB N N 37 KG6 N7 C12 SING N N 38 KG6 C5 C4 SING N N 39 KG6 C5 N6 SING Y N 40 KG6 C8 N5 DOUB Y N 41 KG6 C4 C3 TRIP N N 42 KG6 C3 C2 SING N N 43 KG6 C9 N5 SING Y N 44 KG6 C9 N6 SING Y N 45 KG6 O C10 SING N N 46 KG6 O C11 SING N N 47 KG6 N6 C10 SING N N 48 KG6 C N SING N N 49 KG6 C12 C11 SING N N 50 KG6 C10 C17 SING N N 51 KG6 C11 C16 SING N N 52 KG6 C17 C16 SING N N 53 KG6 C17 O5 SING N N 54 KG6 C16 O4 SING N N 55 KG6 C8 H2 SING N N 56 KG6 C1 H3 SING N N 57 KG6 C1 H4 SING N N 58 KG6 O5 H5 SING N N 59 KG6 N3 H6 SING N N 60 KG6 N3 H7 SING N N 61 KG6 O4 H8 SING N N 62 KG6 O3 H9 SING N N 63 KG6 C2 H10 SING N N 64 KG6 C2 H11 SING N N 65 KG6 N H12 SING N N 66 KG6 N H13 SING N N 67 KG6 C H15 SING N N 68 KG6 C H16 SING N N 69 KG6 C10 H17 SING N N 70 KG6 C11 H18 SING N N 71 KG6 C12 H19 SING N N 72 KG6 C12 H20 SING N N 73 KG6 C14 H21 SING N N 74 KG6 C14 H22 SING N N 75 KG6 C16 H23 SING N N 76 KG6 C17 H24 SING N N 77 KG6 C18 H25 SING N N 78 KG6 C18 H26 SING N N 79 KG6 C19 H27 SING N N 80 KG6 C20 H28 SING N N 81 KG6 C21 H29 SING N N 82 KG6 C22 H30 SING N N 83 KG6 C23 H31 SING N N 84 KG6 C26 H32 SING N N 85 KG6 N10 H33 SING N N 86 KG6 N10 H34 SING N N 87 KG6 N7 H35 SING N N 88 KG6 O7 H36 SING N N 89 KG6 O8 H37 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KG6 InChI InChI 1.06 "InChI=1S/C28H35N13O9/c29-3-5-39(8-13-20(46)21(47)27(50-13)40-11-37-17-23(30)33-9-35-25(17)40)4-1-2-14-38-18-24(31)34-10-36-26(18)41(14)28-22(48)19(45)12(49-28)7-32-15(42)6-16(43)44/h9-13,19-22,27-28,45-48H,3-8,29H2,(H,32,42)(H,43,44)(H2,30,33,35)(H2,31,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" KG6 InChIKey InChI 1.06 SROHEFTVUSADJE-QJYUSYPVSA-N KG6 SMILES_CANONICAL CACTVS 3.385 "NCCN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CNC(=O)CC(O)=O)[C@@H](O)[C@H]3O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" KG6 SMILES CACTVS 3.385 "NCCN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CNC(=O)CC(O)=O)[CH](O)[CH]3O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" KG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CCN)CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CC(=O)O)O)O)N)O)O)N" KG6 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCN)CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CC(=O)O)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id KG6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KG6 "Create component" 2022-05-25 PDBE KG6 "Modify descriptor" 2022-08-22 RCSB KG6 "Initial release" 2023-01-11 RCSB #