data_KGI # _chem_comp.id KGI _chem_comp.name "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 N13 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 683.633 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KGI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KGI N1 N1 N 0 1 N N N 15.717 7.142 14.111 3.197 -3.914 0.652 N1 KGI 1 KGI C7 C1 C 0 1 Y N N 18.583 11.302 12.892 4.114 1.350 -0.753 C7 KGI 2 KGI C8 C2 C 0 1 Y N N 20.394 12.307 12.374 5.768 2.751 -0.588 C8 KGI 3 KGI N2 N2 N 0 1 Y N N 19.613 10.548 13.438 4.659 1.156 0.492 N2 KGI 4 KGI C9 C3 C 0 1 Y N N 20.784 11.191 13.102 5.708 2.033 0.619 C9 KGI 5 KGI O1 O1 O 0 1 N N N 19.131 8.245 13.416 3.921 -1.081 0.882 O1 KGI 6 KGI C1 C4 C 0 1 N N N 15.560 6.445 15.239 2.734 -4.995 -0.007 C1 KGI 7 KGI O5 O2 O 0 1 N N N 17.712 10.371 7.976 -5.391 -2.589 0.517 O5 KGI 8 KGI C5 C5 C 0 1 N N R 18.554 9.369 15.409 2.860 0.647 2.108 C5 KGI 9 KGI C6 C6 C 0 1 N N S 18.329 7.875 15.614 2.080 -0.671 2.316 C6 KGI 10 KGI N3 N3 N 0 1 Y N N 19.012 12.374 12.252 4.779 2.289 -1.384 N3 KGI 11 KGI C4 C7 C 0 1 N N R 19.524 9.331 14.236 4.206 0.194 1.499 C4 KGI 12 KGI O4 O3 O 0 1 N N N 15.736 8.459 9.977 -3.041 -0.144 -0.502 O4 KGI 13 KGI C3 C8 C 0 1 N N R 18.296 7.342 14.174 3.046 -1.763 1.807 C3 KGI 14 KGI O3 O4 O 0 1 N N N 19.445 7.313 16.296 1.787 -0.866 3.701 O3 KGI 15 KGI C2 C9 C 0 1 N N N 16.991 7.299 13.393 2.269 -2.868 1.088 C2 KGI 16 KGI N4 N4 N 0 1 Y N N 22.032 10.820 13.387 6.587 2.306 1.577 N4 KGI 17 KGI N N5 N 0 1 N N N 13.349 5.851 16.142 2.943 -7.134 -1.140 N KGI 18 KGI C C10 C 0 1 N N N 14.345 6.914 16.063 3.689 -6.074 -0.449 C KGI 19 KGI O O5 O 0 1 N N N 16.332 5.565 15.624 1.550 -5.099 -0.244 O KGI 20 KGI C10 C11 C 0 1 Y N N 22.920 11.670 12.864 7.503 3.236 1.404 C10 KGI 21 KGI C11 C12 C 0 1 Y N N 21.424 13.131 11.878 6.765 3.735 -0.726 C11 KGI 22 KGI C12 C13 C 0 1 N N N 17.211 10.931 13.003 2.994 0.632 -1.284 C12 KGI 23 KGI C13 C14 C 0 1 N N N 16.026 10.795 13.001 2.076 0.044 -1.720 C13 KGI 24 KGI C14 C15 C 0 1 N N N 14.572 10.564 13.057 0.925 -0.694 -2.266 C14 KGI 25 KGI C15 C16 C 0 1 N N N 13.962 9.936 10.718 -1.364 -1.339 -1.816 C15 KGI 26 KGI C16 C17 C 0 1 N N R 15.290 9.828 9.989 -2.388 -1.419 -0.682 C16 KGI 27 KGI C17 C18 C 0 1 N N R 16.804 8.387 9.047 -4.271 -0.441 0.193 C17 KGI 28 KGI C18 C19 C 0 1 N N R 16.585 9.505 8.011 -4.793 -1.738 -0.463 C18 KGI 29 KGI C19 C20 C 0 1 N N S 15.317 10.214 8.515 -3.526 -2.397 -1.052 C19 KGI 30 KGI C20 C21 C 0 1 Y N N 15.853 6.420 7.762 -5.252 1.548 -1.010 C20 KGI 31 KGI C21 C22 C 0 1 Y N N 17.521 5.107 7.678 -6.919 2.067 0.275 C21 KGI 32 KGI C22 C23 C 0 1 Y N N 17.928 6.202 8.428 -6.286 0.948 0.842 C22 KGI 33 KGI C23 C24 C 0 1 Y N N 19.962 5.390 8.671 -7.828 0.960 2.546 C23 KGI 34 KGI C24 C25 C 0 1 Y N N 18.481 4.102 7.448 -8.045 2.594 0.930 C24 KGI 35 KGI C25 C26 C 0 1 N N N 12.851 8.907 12.644 -0.644 0.935 -1.403 C25 KGI 36 KGI C26 C27 C 0 1 N N N 11.617 9.737 12.921 -1.126 1.325 -2.776 C26 KGI 37 KGI N10 N6 N 0 1 Y N N 19.137 6.399 8.962 -6.770 0.433 1.968 N10 KGI 38 KGI N11 N7 N 0 1 Y N N 19.716 4.283 7.964 -8.456 2.011 2.052 N11 KGI 39 KGI N12 N8 N 0 1 N N N 18.241 2.986 6.753 -8.711 3.695 0.419 N12 KGI 40 KGI N5 N9 N 0 1 Y N N 22.699 12.774 12.143 7.599 3.937 0.289 N5 KGI 41 KGI N6 N10 N 0 1 N N N 21.208 14.241 11.163 6.874 4.475 -1.890 N6 KGI 42 KGI N7 N11 N 0 1 N N N 14.065 9.549 12.134 -0.246 -0.479 -1.406 N7 KGI 43 KGI N8 N12 N 0 1 Y N N 16.847 7.047 8.465 -5.235 0.648 0.013 N8 KGI 44 KGI N9 N13 N 0 1 Y N N 16.205 5.256 7.267 -6.241 2.380 -0.854 N9 KGI 45 KGI O2 O6 O 0 1 N N N 19.177 10.003 16.521 3.074 1.304 3.359 O2 KGI 46 KGI O6 O7 O 0 1 N N N 15.401 11.623 8.326 -3.302 -3.675 -0.454 O6 KGI 47 KGI O7 O8 O 0 1 N N N 11.661 10.988 12.534 -1.076 0.528 -3.683 O7 KGI 48 KGI O8 O9 O 0 1 N N N 10.648 9.251 13.470 -1.611 2.558 -2.992 O8 KGI 49 KGI H1 H1 H 0 1 N N N 14.910 7.590 13.726 4.145 -3.831 0.842 H1 KGI 50 KGI H2 H2 H 0 1 N N N 18.470 9.893 7.660 -5.682 -3.444 0.170 H2 KGI 51 KGI H3 H3 H 0 1 N N N 17.616 9.866 15.120 2.328 1.302 1.419 H3 KGI 52 KGI H4 H4 H 0 1 N N N 17.375 7.683 16.128 1.161 -0.667 1.729 H4 KGI 53 KGI H5 H5 H 0 1 N N N 20.523 9.118 14.645 4.958 0.078 2.279 H5 KGI 54 KGI H6 H6 H 0 1 N N N 18.741 6.336 14.167 3.619 -2.179 2.636 H6 KGI 55 KGI H7 H7 H 0 1 N N N 19.469 7.640 17.188 1.232 -0.175 4.087 H7 KGI 56 KGI H8 H8 H 0 1 N N N 17.067 6.456 12.691 1.761 -2.449 0.219 H8 KGI 57 KGI H9 H9 H 0 1 N N N 16.925 8.241 12.829 1.532 -3.296 1.768 H9 KGI 58 KGI H10 H10 H 0 1 N N N 12.566 6.166 16.678 2.415 -6.759 -1.914 H10 KGI 59 KGI H11 H11 H 0 1 N N N 13.046 5.609 15.220 3.562 -7.870 -1.447 H11 KGI 60 KGI H13 H13 H 0 1 N N N 14.675 7.179 17.078 4.429 -5.649 -1.127 H13 KGI 61 KGI H14 H14 H 0 1 N N N 13.898 7.796 15.581 4.193 -6.493 0.422 H14 KGI 62 KGI H15 H15 H 0 1 N N N 23.957 11.433 13.049 8.202 3.433 2.203 H15 KGI 63 KGI H16 H16 H 0 1 N N N 14.068 11.514 12.828 0.709 -0.335 -3.272 H16 KGI 64 KGI H17 H17 H 0 1 N N N 14.317 10.251 14.080 1.160 -1.758 -2.302 H17 KGI 65 KGI H18 H18 H 0 1 N N N 13.612 10.977 10.661 -0.991 -2.338 -2.039 H18 KGI 66 KGI H19 H19 H 0 1 N N N 13.233 9.277 10.224 -1.838 -0.921 -2.704 H19 KGI 67 KGI H20 H20 H 0 1 N N N 16.028 10.447 10.521 -1.904 -1.731 0.244 H20 KGI 68 KGI H21 H21 H 0 1 N N N 17.756 8.584 9.563 -4.078 -0.603 1.254 H21 KGI 69 KGI H22 H22 H 0 1 N N N 16.392 9.060 7.024 -5.507 -1.508 -1.254 H22 KGI 70 KGI H23 H23 H 0 1 N N N 14.436 9.797 8.006 -3.611 -2.490 -2.134 H23 KGI 71 KGI H24 H24 H 0 1 N N N 14.869 6.844 7.627 -4.546 1.571 -1.828 H24 KGI 72 KGI H25 H25 H 0 1 N N N 20.965 5.481 9.060 -8.196 0.517 3.459 H25 KGI 73 KGI H26 H26 H 0 1 N N N 12.562 8.144 11.907 0.212 1.553 -1.129 H26 KGI 74 KGI H27 H27 H 0 1 N N N 13.124 8.418 13.591 -1.446 1.085 -0.680 H27 KGI 75 KGI H28 H28 H 0 1 N N N 19.069 2.426 6.724 -8.401 4.112 -0.400 H28 KGI 76 KGI H29 H29 H 0 1 N N N 17.506 2.471 7.193 -9.487 4.049 0.881 H29 KGI 77 KGI H30 H30 H 0 1 N N N 22.084 14.659 10.922 7.566 5.150 -1.972 H30 KGI 78 KGI H31 H31 H 0 1 N N N 20.709 14.008 10.328 6.259 4.318 -2.624 H31 KGI 79 KGI H33 H33 H 0 1 N N N 18.572 10.027 17.253 2.259 1.557 3.814 H33 KGI 80 KGI H34 H34 H 0 1 N N N 14.606 12.034 8.646 -4.016 -4.310 -0.604 H34 KGI 81 KGI H35 H35 H 0 1 N N N 9.970 9.911 13.560 -1.908 2.762 -3.890 H35 KGI 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KGI N12 C24 SING N N 1 KGI N9 C21 SING Y N 2 KGI N9 C20 DOUB Y N 3 KGI C24 C21 DOUB Y N 4 KGI C24 N11 SING Y N 5 KGI C21 C22 SING Y N 6 KGI C20 N8 SING Y N 7 KGI N11 C23 DOUB Y N 8 KGI O5 C18 SING N N 9 KGI C18 C19 SING N N 10 KGI C18 C17 SING N N 11 KGI O6 C19 SING N N 12 KGI C22 N8 SING Y N 13 KGI C22 N10 DOUB Y N 14 KGI N8 C17 SING N N 15 KGI C19 C16 SING N N 16 KGI C23 N10 SING Y N 17 KGI C17 O4 SING N N 18 KGI O4 C16 SING N N 19 KGI C16 C15 SING N N 20 KGI C15 N7 SING N N 21 KGI N6 C11 SING N N 22 KGI C11 N5 DOUB Y N 23 KGI C11 C8 SING Y N 24 KGI N7 C25 SING N N 25 KGI N7 C14 SING N N 26 KGI N5 C10 SING Y N 27 KGI N3 C8 SING Y N 28 KGI N3 C7 DOUB Y N 29 KGI C8 C9 DOUB Y N 30 KGI O7 C26 DOUB N N 31 KGI C25 C26 SING N N 32 KGI C10 N4 DOUB Y N 33 KGI C7 C12 SING N N 34 KGI C7 N2 SING Y N 35 KGI C26 O8 SING N N 36 KGI C13 C12 TRIP N N 37 KGI C13 C14 SING N N 38 KGI C9 N4 SING Y N 39 KGI C9 N2 SING Y N 40 KGI C2 N1 SING N N 41 KGI C2 C3 SING N N 42 KGI O1 C3 SING N N 43 KGI O1 C4 SING N N 44 KGI N2 C4 SING N N 45 KGI N1 C1 SING N N 46 KGI C3 C6 SING N N 47 KGI C4 C5 SING N N 48 KGI C1 O DOUB N N 49 KGI C1 C SING N N 50 KGI C5 C6 SING N N 51 KGI C5 O2 SING N N 52 KGI C6 O3 SING N N 53 KGI C N SING N N 54 KGI N1 H1 SING N N 55 KGI O5 H2 SING N N 56 KGI C5 H3 SING N N 57 KGI C6 H4 SING N N 58 KGI C4 H5 SING N N 59 KGI C3 H6 SING N N 60 KGI O3 H7 SING N N 61 KGI C2 H8 SING N N 62 KGI C2 H9 SING N N 63 KGI N H10 SING N N 64 KGI N H11 SING N N 65 KGI C H13 SING N N 66 KGI C H14 SING N N 67 KGI C10 H15 SING N N 68 KGI C14 H16 SING N N 69 KGI C14 H17 SING N N 70 KGI C15 H18 SING N N 71 KGI C15 H19 SING N N 72 KGI C16 H20 SING N N 73 KGI C17 H21 SING N N 74 KGI C18 H22 SING N N 75 KGI C19 H23 SING N N 76 KGI C20 H24 SING N N 77 KGI C23 H25 SING N N 78 KGI C25 H26 SING N N 79 KGI C25 H27 SING N N 80 KGI N12 H28 SING N N 81 KGI N12 H29 SING N N 82 KGI N6 H30 SING N N 83 KGI N6 H31 SING N N 84 KGI O2 H33 SING N N 85 KGI O6 H34 SING N N 86 KGI O8 H35 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KGI InChI InChI 1.06 "InChI=1S/C27H33N13O9/c28-4-14(41)31-5-11-18(44)21(47)27(48-11)40-13(37-17-23(30)33-9-35-25(17)40)2-1-3-38(7-15(42)43)6-12-19(45)20(46)26(49-12)39-10-36-16-22(29)32-8-34-24(16)39/h8-12,18-21,26-27,44-47H,3-7,28H2,(H,31,41)(H,42,43)(H2,29,32,34)(H2,30,33,35)/t11-,12-,18-,19-,20-,21-,26-,27-/m1/s1" KGI InChIKey InChI 1.06 NHPRQGWVLUQCPR-WNZAMUCISA-N KGI SMILES_CANONICAL CACTVS 3.385 "NCC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O" KGI SMILES CACTVS 3.385 "NCC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O" KGI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CN)O)O)N)CC(=O)O)O)O)N" KGI SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CN)O)O)N)CC(=O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id KGI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KGI "Create component" 2022-05-25 PDBE KGI "Modify descriptor" 2022-08-22 RCSB KGI "Initial release" 2023-01-11 RCSB #