data_KGM # _chem_comp.id KGM _chem_comp.name "heptyl alpha-D-mannopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C13 H26 O6" _chem_comp.mon_nstd_parent_comp_id MAN _chem_comp.pdbx_synonyms "Heptyl Alpha-D-mannopyrannoside; heptyl alpha-D-mannoside; heptyl D-mannoside; heptyl mannoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-23 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.342 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KGM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4BUQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 KGM "Heptyl Alpha-D-mannopyrannoside" PDB ? 2 KGM "heptyl alpha-D-mannoside" PDB ? 3 KGM "heptyl D-mannoside" PDB ? 4 KGM "heptyl mannoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KGM O6 O6 O 0 1 N N N 38.894 4.560 10.227 1.250 -3.303 0.669 O6 KGM 1 KGM C6 C6 C 0 1 N N N 38.518 5.133 11.481 2.416 -2.645 0.170 C6 KGM 2 KGM C5 C5 C 0 1 N N R 39.687 5.985 11.984 2.109 -1.163 -0.054 C5 KGM 3 KGM C10 C10 C 0 1 N N N 40.285 5.779 18.546 -4.467 0.469 -0.490 C10 KGM 4 KGM O5 O5 O 0 1 N N N 40.831 5.120 12.107 1.832 -0.539 1.202 O5 KGM 5 KGM C4 C4 C 0 1 N N S 40.009 7.116 11.026 3.318 -0.484 -0.703 C4 KGM 6 KGM O4 O4 O 0 1 N N N 38.864 8.001 10.881 3.562 -1.067 -1.984 O4 KGM 7 KGM C3 C3 C 0 1 N N S 41.191 7.875 11.586 3.026 1.011 -0.868 C3 KGM 8 KGM O3 O3 O 0 1 N N N 41.536 8.915 10.678 4.177 1.666 -1.406 O3 KGM 9 KGM C2 C2 C 0 1 N N S 42.377 6.960 11.723 2.690 1.608 0.502 C2 KGM 10 KGM O2 O2 O 0 1 N N N 42.693 6.466 10.436 3.822 1.491 1.365 O2 KGM 11 KGM C1 C1 C 0 1 N N S 42.018 5.781 12.613 1.506 0.849 1.105 C1 KGM 12 KGM O1 O1 O 0 1 N N N 41.705 6.286 13.900 0.359 1.011 0.267 O1 KGM 13 KGM C7 C7 C 0 1 N N N 41.400 5.283 14.887 -0.857 0.533 0.847 C7 KGM 14 KGM C8 C8 C 0 1 N N N 41.028 6.016 16.181 -2.011 0.757 -0.132 C8 KGM 15 KGM C9 C9 C 0 1 N N N 40.663 5.008 17.271 -3.312 0.246 0.489 C9 KGM 16 KGM C13 C13 C 0 1 N N N 39.150 4.567 22.040 -8.224 -0.329 -0.227 C13 KGM 17 KGM C12 C12 C 0 1 N N N 39.534 5.548 20.920 -6.923 0.182 -0.848 C12 KGM 18 KGM C11 C11 C 0 1 N N N 39.918 4.780 19.649 -5.768 -0.042 0.131 C11 KGM 19 KGM H131 H131 H 0 0 N N N 38.877 5.131 22.944 -8.131 -1.394 -0.012 H131 KGM 20 KGM H132 H132 H 0 0 N N N 38.294 3.958 21.716 -8.422 0.212 0.699 H132 KGM 21 KGM H133 H133 H 0 0 N N N 40.004 3.910 22.261 -9.047 -0.170 -0.924 H133 KGM 22 KGM H121 H121 H 0 0 N N N 38.678 6.204 20.703 -6.725 -0.359 -1.773 H121 KGM 23 KGM H122 H122 H 0 0 N N N 40.389 6.157 21.248 -7.016 1.246 -1.062 H122 KGM 24 KGM H111 H111 H 0 0 N N N 40.781 4.130 19.859 -5.675 -1.107 0.346 H111 KGM 25 KGM H112 H112 H 0 0 N N N 39.067 4.165 19.320 -5.966 0.499 1.056 H112 KGM 26 KGM H101 H101 H 0 0 N N N 39.424 6.432 18.340 -4.560 1.534 -0.704 H101 KGM 27 KGM H102 H102 H 0 0 N N N 41.139 6.391 18.873 -4.269 -0.072 -1.415 H102 KGM 28 KGM H91C H91C H 0 0 N N N 41.524 4.355 17.475 -3.511 0.787 1.414 H91C KGM 29 KGM H92C H92C H 0 0 N N N 39.810 4.398 16.940 -3.219 -0.819 0.704 H92C KGM 30 KGM H81C H81C H 0 0 N N N 40.167 6.674 15.991 -2.104 1.822 -0.346 H81C KGM 31 KGM H82C H82C H 0 0 N N N 41.884 6.620 16.516 -1.813 0.216 -1.057 H82C KGM 32 KGM H71C H71C H 0 0 N N N 42.278 4.642 15.056 -0.763 -0.531 1.061 H71C KGM 33 KGM H72C H72C H 0 0 N N N 40.555 4.666 14.548 -1.055 1.074 1.772 H72C KGM 34 KGM H1 H1 H 0 1 N N N 42.864 5.079 12.657 1.289 1.242 2.098 H1 KGM 35 KGM H2 H2 H 0 1 N N N 43.225 7.509 12.159 2.428 2.660 0.386 H2 KGM 36 KGM HO2 HA H 0 1 N Y N 42.920 7.191 9.865 3.680 1.850 2.251 HO2 KGM 37 KGM H3 H3 H 0 1 N N N 40.928 8.288 12.571 2.181 1.145 -1.543 H3 KGM 38 KGM HO3 HB H 0 1 N Y N 40.799 9.505 10.577 4.062 2.617 -1.537 HO3 KGM 39 KGM H4 H4 H 0 1 N N N 40.282 6.693 10.048 4.195 -0.617 -0.069 H4 KGM 40 KGM HO4 HC H 0 1 N Y N 38.129 7.513 10.529 4.316 -0.684 -2.454 HO4 KGM 41 KGM H5 H5 H 0 1 N N N 39.424 6.408 12.965 1.243 -1.066 -0.707 H5 KGM 42 KGM H61 H61C H 0 1 N N N 38.300 4.334 12.205 3.226 -2.744 0.893 H61 KGM 43 KGM H62 H62C H 0 1 N N N 37.626 5.763 11.350 2.714 -3.101 -0.774 H62 KGM 44 KGM HO6 H6 H 0 1 N Y N 38.181 4.026 9.896 1.371 -4.248 0.834 HO6 KGM 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KGM C13 C12 SING N N 1 KGM C12 C11 SING N N 2 KGM C11 C10 SING N N 3 KGM C10 C9 SING N N 4 KGM C9 C8 SING N N 5 KGM C8 C7 SING N N 6 KGM C7 O1 SING N N 7 KGM O1 C1 SING N N 8 KGM C1 C2 SING N N 9 KGM C1 O5 SING N N 10 KGM C2 O2 SING N N 11 KGM C2 C3 SING N N 12 KGM C3 O3 SING N N 13 KGM C3 C4 SING N N 14 KGM C4 O4 SING N N 15 KGM C4 C5 SING N N 16 KGM C5 O5 SING N N 17 KGM C5 C6 SING N N 18 KGM C6 O6 SING N N 19 KGM C13 H131 SING N N 20 KGM C13 H132 SING N N 21 KGM C13 H133 SING N N 22 KGM C12 H121 SING N N 23 KGM C12 H122 SING N N 24 KGM C11 H111 SING N N 25 KGM C11 H112 SING N N 26 KGM C10 H101 SING N N 27 KGM C10 H102 SING N N 28 KGM C9 H91C SING N N 29 KGM C9 H92C SING N N 30 KGM C8 H81C SING N N 31 KGM C8 H82C SING N N 32 KGM C7 H71C SING N N 33 KGM C7 H72C SING N N 34 KGM C1 H1 SING N N 35 KGM C2 H2 SING N N 36 KGM O2 HO2 SING N N 37 KGM C3 H3 SING N N 38 KGM O3 HO3 SING N N 39 KGM C4 H4 SING N N 40 KGM O4 HO4 SING N N 41 KGM C5 H5 SING N N 42 KGM C6 H61 SING N N 43 KGM C6 H62 SING N N 44 KGM O6 HO6 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KGM SMILES ACDLabs 12.01 "O(CCCCCCC)C1OC(C(O)C(O)C1O)CO" KGM InChI InChI 1.03 "InChI=1S/C13H26O6/c1-2-3-4-5-6-7-18-13-12(17)11(16)10(15)9(8-14)19-13/h9-17H,2-8H2,1H3/t9-,10-,11+,12+,13+/m1/s1" KGM InChIKey InChI 1.03 NIDYWHLDTIVRJT-BNDIWNMDSA-N KGM SMILES_CANONICAL CACTVS 3.385 "CCCCCCCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O" KGM SMILES CACTVS 3.385 "CCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" KGM SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCCCO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O" KGM SMILES "OpenEye OEToolkits" 1.9.2 "CCCCCCCOC1C(C(C(C(O1)CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KGM "SYSTEMATIC NAME" ACDLabs 12.01 "heptyl alpha-D-mannopyranoside" KGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3S,4S,5S,6R)-2-heptoxy-6-(hydroxymethyl)oxane-3,4,5-triol" # _pdbx_chem_comp_related.comp_id KGM _pdbx_chem_comp_related.related_comp_id MAN _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 KGM C1 MAN C1 "Carbohydrate core" 2 KGM C2 MAN C2 "Carbohydrate core" 3 KGM C3 MAN C3 "Carbohydrate core" 4 KGM C4 MAN C4 "Carbohydrate core" 5 KGM C5 MAN C5 "Carbohydrate core" 6 KGM C6 MAN C6 "Carbohydrate core" 7 KGM O1 MAN O1 "Carbohydrate core" 8 KGM O2 MAN O2 "Carbohydrate core" 9 KGM O3 MAN O3 "Carbohydrate core" 10 KGM O4 MAN O4 "Carbohydrate core" 11 KGM O5 MAN O5 "Carbohydrate core" 12 KGM O6 MAN O6 "Carbohydrate core" 13 KGM H1 MAN H1 "Carbohydrate core" 14 KGM H2 MAN H2 "Carbohydrate core" 15 KGM H3 MAN H3 "Carbohydrate core" 16 KGM H4 MAN H4 "Carbohydrate core" 17 KGM H5 MAN H5 "Carbohydrate core" 18 KGM HO6 MAN HO6 "Carbohydrate core" 19 KGM H61 MAN H61 "Carbohydrate core" 20 KGM H62 MAN H62 "Carbohydrate core" 21 KGM HO2 MAN HO2 "Carbohydrate core" 22 KGM HO3 MAN HO3 "Carbohydrate core" 23 KGM HO4 MAN HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support KGM "CARBOHYDRATE ISOMER" D PDB ? KGM "CARBOHYDRATE RING" pyranose PDB ? KGM "CARBOHYDRATE ANOMER" alpha PDB ? KGM "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KGM "Create component" 2013-06-23 EBI KGM "Initial release" 2014-02-12 RCSB KGM "Modify descriptor" 2014-09-05 RCSB KGM "Other modification" 2020-07-03 RCSB KGM "Modify parent residue" 2020-07-17 RCSB KGM "Modify name" 2020-07-17 RCSB KGM "Modify synonyms" 2020-07-17 RCSB KGM "Modify internal type" 2020-07-17 RCSB KGM "Modify linking type" 2020-07-17 RCSB KGM "Modify atom id" 2020-07-17 RCSB KGM "Modify component atom id" 2020-07-17 RCSB KGM "Modify leaving atom flag" 2020-07-17 RCSB ##