data_KGX # _chem_comp.id KGX _chem_comp.name "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H36 N14 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 712.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KGX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KGX N1 N1 N 0 1 N N N 15.765 5.312 11.075 5.914 3.902 0.045 N1 KGX 1 KGX C7 C1 C 0 1 N N S 18.611 7.752 15.674 3.049 -0.521 -3.099 C7 KGX 2 KGX C8 C2 C 0 1 Y N N 18.688 11.218 12.856 2.282 -2.453 0.552 C8 KGX 3 KGX N2 N2 N 0 1 N N N 16.459 6.821 12.633 4.953 2.101 -1.087 N2 KGX 4 KGX C9 C3 C 0 1 N N N 17.313 10.884 12.946 1.616 -1.186 0.508 C9 KGX 5 KGX O1 O1 O 0 1 N N N 18.977 8.166 13.365 4.078 -0.696 -0.972 O1 KGX 6 KGX C1 C4 C 0 1 N N N 15.170 4.058 10.635 5.882 5.310 0.449 C1 KGX 7 KGX O5 O2 O 0 1 N N N 15.565 11.513 8.322 -2.989 4.298 -0.942 O5 KGX 8 KGX C5 C5 C 0 1 N N R 19.578 9.182 14.147 3.855 -2.063 -1.394 C5 KGX 9 KGX C6 C6 C 0 1 N N R 18.751 9.245 15.427 2.849 -1.956 -2.562 C6 KGX 10 KGX N3 N3 N 0 1 Y N N 19.687 10.410 13.381 3.285 -2.849 -0.298 N3 KGX 11 KGX C4 C7 C 0 1 N N R 18.306 7.242 14.268 4.151 0.072 -2.193 C4 KGX 12 KGX O4 O3 O 0 1 N N N 15.922 8.364 9.937 -3.251 1.015 0.358 O4 KGX 13 KGX C3 C8 C 0 1 N N N 16.820 7.252 13.966 3.873 1.550 -1.909 C3 KGX 14 KGX O3 O4 O 0 1 N N N 19.416 9.915 16.487 3.154 -2.916 -3.575 O3 KGX 15 KGX C2 C9 C 0 1 N N N 16.100 5.550 12.367 4.921 3.395 -0.711 C2 KGX 16 KGX N4 N4 N 0 1 N N N 14.270 9.388 12.036 -0.625 1.214 1.492 N4 KGX 17 KGX N N5 N 0 1 N N N 13.212 3.262 9.368 7.085 7.038 1.699 N KGX 18 KGX C C10 C 0 1 N N N 13.704 4.262 10.331 7.117 5.626 1.294 C KGX 19 KGX O O5 O 0 1 N N N 16.114 4.670 13.228 3.995 4.105 -1.055 O KGX 20 KGX C10 C11 C 0 1 N N N 16.129 10.753 12.922 1.071 -0.147 0.473 C10 KGX 21 KGX C11 C12 C 0 1 N N N 14.693 10.428 12.980 0.386 1.156 0.428 C11 KGX 22 KGX C12 C13 C 0 1 N N N 14.141 9.835 10.639 -1.487 2.394 1.334 C12 KGX 23 KGX C13 C14 C 0 1 N N R 15.487 9.738 9.953 -2.428 2.182 0.147 C13 KGX 24 KGX C14 C15 C 0 1 N N R 16.934 8.286 8.939 -4.387 1.186 -0.517 C14 KGX 25 KGX C15 C16 C 0 1 N N R 16.704 9.418 7.930 -4.746 2.684 -0.409 C15 KGX 26 KGX C16 C17 C 0 1 N N S 15.447 10.112 8.476 -3.428 3.355 0.038 C16 KGX 27 KGX C17 C18 C 0 1 Y N N 15.963 6.308 7.669 -5.709 -0.108 1.199 C17 KGX 28 KGX C18 C19 C 0 1 Y N N 17.651 5.018 7.614 -7.366 -0.851 0.014 C18 KGX 29 KGX C19 C20 C 0 1 Y N N 18.035 6.126 8.350 -6.547 -0.094 -0.840 C19 KGX 30 KGX C20 C21 C 0 1 Y N N 20.072 5.346 8.639 -7.983 -0.535 -2.579 C20 KGX 31 KGX C21 C22 C 0 1 Y N N 18.626 4.021 7.414 -8.522 -1.440 -0.525 C21 KGX 32 KGX C22 C23 C 0 1 N N N 13.098 8.655 12.515 0.005 1.196 2.819 C22 KGX 33 KGX C23 C24 C 0 1 N N N 11.864 9.461 12.855 -1.025 0.840 3.859 C23 KGX 34 KGX C24 C25 C 0 1 Y N N 20.534 12.163 12.362 2.839 -4.463 1.164 C24 KGX 35 KGX C25 C26 C 0 1 Y N N 20.874 11.021 13.066 3.654 -4.119 0.070 C25 KGX 36 KGX C26 C27 C 0 1 Y N N 23.026 11.433 12.866 4.667 -6.178 0.200 C26 KGX 37 KGX C27 C28 C 0 1 Y N N 21.593 12.955 11.884 3.008 -5.735 1.743 C27 KGX 38 KGX N10 N6 N 0 1 Y N N 19.157 12.290 12.248 2.031 -3.410 1.414 N10 KGX 39 KGX N11 N7 N 0 1 Y N N 22.109 10.600 13.358 4.545 -4.999 -0.373 N11 KGX 40 KGX N12 N8 N 0 1 Y N N 22.848 12.559 12.175 3.926 -6.547 1.229 N12 KGX 41 KGX N13 N9 N 0 1 N N N 21.427 14.039 11.116 2.237 -6.131 2.821 N13 KGX 42 KGX N5 N10 N 0 1 Y N N 16.947 6.960 8.370 -5.507 0.357 -0.066 N5 KGX 43 KGX N6 N11 N 0 1 Y N N 16.332 5.142 7.192 -6.800 -0.816 1.244 N6 KGX 44 KGX N7 N12 N 0 1 Y N N 19.239 6.347 8.901 -6.891 0.036 -2.118 N7 KGX 45 KGX N8 N13 N 0 1 Y N N 19.852 4.234 7.936 -8.784 -1.255 -1.815 N8 KGX 46 KGX N9 N14 N 0 1 N N N 18.401 2.869 6.761 -9.367 -2.197 0.267 N9 KGX 47 KGX O2 O6 O 0 1 N N N 19.786 7.184 16.249 3.483 -0.551 -4.460 O2 KGX 48 KGX O6 O7 O 0 1 N N N 17.850 10.268 7.961 -5.161 3.192 -1.679 O6 KGX 49 KGX O7 O8 O 0 1 N N N 10.923 8.964 13.448 -0.682 0.797 5.156 O7 KGX 50 KGX O8 O9 O 0 1 N N N 11.878 10.719 12.484 -2.160 0.592 3.526 O8 KGX 51 KGX H1 H1 H 0 1 N N N 15.933 6.027 10.396 6.653 3.336 0.319 H1 KGX 52 KGX H2 H2 H 0 1 N N N 17.739 7.572 16.320 2.128 0.054 -3.006 H2 KGX 53 KGX H3 H3 H 0 1 N N N 16.476 7.486 11.887 5.691 1.535 -0.813 H3 KGX 54 KGX H4 H4 H 0 1 N N N 15.276 3.305 11.430 5.878 5.942 -0.439 H4 KGX 55 KGX H5 H5 H 0 1 N N N 15.685 3.708 9.728 4.983 5.500 1.034 H5 KGX 56 KGX H6 H6 H 0 1 N N N 14.785 11.936 8.661 -3.609 5.024 -1.095 H6 KGX 57 KGX H7 H7 H 0 1 N N N 20.592 8.859 14.427 4.788 -2.511 -1.738 H7 KGX 58 KGX H8 H8 H 0 1 N N N 17.766 9.689 15.220 1.830 -2.090 -2.201 H8 KGX 59 KGX H9 H9 H 0 1 N N N 18.704 6.224 14.149 5.129 -0.048 -2.659 H9 KGX 60 KGX H10 H10 H 0 1 N N N 16.452 8.280 14.103 2.926 1.646 -1.378 H10 KGX 61 KGX H11 H11 H 0 1 N N N 16.322 6.585 14.686 3.818 2.096 -2.851 H11 KGX 62 KGX H12 H12 H 0 1 N N N 18.858 9.925 17.256 2.553 -2.893 -4.332 H12 KGX 63 KGX H14 H14 H 0 1 N N N 12.242 3.422 9.187 6.230 7.255 2.188 H14 KGX 64 KGX H15 H15 H 0 1 N N N 13.727 3.339 8.515 7.891 7.272 2.259 H15 KGX 65 KGX H17 H17 H 0 1 N N N 13.563 5.267 9.907 7.121 4.994 2.182 H17 KGX 66 KGX H18 H18 H 0 1 N N N 13.129 4.173 11.265 8.017 5.437 0.709 H18 KGX 67 KGX H19 H19 H 0 1 N N N 14.124 11.344 12.762 -0.098 1.278 -0.541 H19 KGX 68 KGX H20 H20 H 0 1 N N N 14.459 10.085 13.998 1.114 1.954 0.574 H20 KGX 69 KGX H21 H21 H 0 1 N N N 13.793 10.878 10.618 -2.074 2.538 2.241 H21 KGX 70 KGX H22 H22 H 0 1 N N N 13.415 9.196 10.115 -0.869 3.274 1.157 H22 KGX 71 KGX H23 H23 H 0 1 N N N 16.218 10.373 10.475 -1.857 2.082 -0.776 H23 KGX 72 KGX H24 H24 H 0 1 N N N 17.909 8.467 9.414 -4.117 0.933 -1.543 H24 KGX 73 KGX H25 H25 H 0 1 N N N 16.515 9.010 6.926 -5.525 2.840 0.337 H25 KGX 74 KGX H26 H26 H 0 1 N N N 14.543 9.710 7.996 -3.555 3.842 1.004 H26 KGX 75 KGX H27 H27 H 0 1 N N N 14.974 6.718 7.523 -5.057 0.080 2.039 H27 KGX 76 KGX H28 H28 H 0 1 N N N 21.065 5.446 9.052 -8.234 -0.409 -3.622 H28 KGX 77 KGX H29 H29 H 0 1 N N N 12.817 7.935 11.732 0.805 0.456 2.831 H29 KGX 78 KGX H30 H30 H 0 1 N N N 13.397 8.111 13.423 0.418 2.181 3.038 H30 KGX 79 KGX H31 H31 H 0 1 N N N 24.054 11.158 13.053 5.401 -6.870 -0.186 H31 KGX 80 KGX H32 H32 H 0 1 N N N 22.321 14.409 10.862 2.362 -7.010 3.210 H32 KGX 81 KGX H33 H33 H 0 1 N N N 20.924 13.788 10.289 1.570 -5.529 3.187 H33 KGX 82 KGX H34 H34 H 0 1 N N N 19.233 2.315 6.765 -9.165 -2.325 1.207 H34 KGX 83 KGX H35 H35 H 0 1 N N N 17.664 2.367 7.214 -10.162 -2.598 -0.117 H35 KGX 84 KGX H36 H36 H 0 1 N N N 19.918 7.542 17.119 2.841 -0.942 -5.069 H36 KGX 85 KGX H37 H37 H 0 1 N N N 18.601 9.800 7.616 -5.342 4.142 -1.682 H37 KGX 86 KGX H38 H38 H 0 1 N N N 10.249 9.620 13.580 -1.377 0.563 5.787 H38 KGX 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KGX N9 C21 SING N N 1 KGX N6 C18 SING Y N 2 KGX N6 C17 DOUB Y N 3 KGX C21 C18 DOUB Y N 4 KGX C21 N8 SING Y N 5 KGX C18 C19 SING Y N 6 KGX C17 N5 SING Y N 7 KGX C15 O6 SING N N 8 KGX C15 C16 SING N N 9 KGX C15 C14 SING N N 10 KGX N8 C20 DOUB Y N 11 KGX O5 C16 SING N N 12 KGX C19 N5 SING Y N 13 KGX C19 N7 DOUB Y N 14 KGX N5 C14 SING N N 15 KGX C16 C13 SING N N 16 KGX C20 N7 SING Y N 17 KGX C14 O4 SING N N 18 KGX N C SING N N 19 KGX O4 C13 SING N N 20 KGX C13 C12 SING N N 21 KGX C C1 SING N N 22 KGX C1 N1 SING N N 23 KGX C12 N4 SING N N 24 KGX N1 C2 SING N N 25 KGX N13 C27 SING N N 26 KGX C27 N12 DOUB Y N 27 KGX C27 C24 SING Y N 28 KGX N4 C22 SING N N 29 KGX N4 C11 SING N N 30 KGX N12 C26 SING Y N 31 KGX N10 C24 SING Y N 32 KGX N10 C8 DOUB Y N 33 KGX C24 C25 DOUB Y N 34 KGX C2 N2 SING N N 35 KGX C2 O DOUB N N 36 KGX O8 C23 DOUB N N 37 KGX C22 C23 SING N N 38 KGX N2 C3 SING N N 39 KGX C23 O7 SING N N 40 KGX C8 C9 SING N N 41 KGX C8 N3 SING Y N 42 KGX C26 N11 DOUB Y N 43 KGX C10 C9 TRIP N N 44 KGX C10 C11 SING N N 45 KGX C25 N11 SING Y N 46 KGX C25 N3 SING Y N 47 KGX O1 C5 SING N N 48 KGX O1 C4 SING N N 49 KGX N3 C5 SING N N 50 KGX C3 C4 SING N N 51 KGX C5 C6 SING N N 52 KGX C4 C7 SING N N 53 KGX C6 C7 SING N N 54 KGX C6 O3 SING N N 55 KGX C7 O2 SING N N 56 KGX N1 H1 SING N N 57 KGX C7 H2 SING N N 58 KGX N2 H3 SING N N 59 KGX C1 H4 SING N N 60 KGX C1 H5 SING N N 61 KGX O5 H6 SING N N 62 KGX C5 H7 SING N N 63 KGX C6 H8 SING N N 64 KGX C4 H9 SING N N 65 KGX C3 H10 SING N N 66 KGX C3 H11 SING N N 67 KGX O3 H12 SING N N 68 KGX N H14 SING N N 69 KGX N H15 SING N N 70 KGX C H17 SING N N 71 KGX C H18 SING N N 72 KGX C11 H19 SING N N 73 KGX C11 H20 SING N N 74 KGX C12 H21 SING N N 75 KGX C12 H22 SING N N 76 KGX C13 H23 SING N N 77 KGX C14 H24 SING N N 78 KGX C15 H25 SING N N 79 KGX C16 H26 SING N N 80 KGX C17 H27 SING N N 81 KGX C20 H28 SING N N 82 KGX C22 H29 SING N N 83 KGX C22 H30 SING N N 84 KGX C26 H31 SING N N 85 KGX N13 H32 SING N N 86 KGX N13 H33 SING N N 87 KGX N9 H34 SING N N 88 KGX N9 H35 SING N N 89 KGX O2 H36 SING N N 90 KGX O6 H37 SING N N 91 KGX O7 H38 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KGX InChI InChI 1.06 "InChI=1S/C28H36N14O9/c29-3-4-32-28(49)33-6-12-18(45)21(48)27(50-12)42-14(39-17-23(31)35-10-37-25(17)42)2-1-5-40(8-15(43)44)7-13-19(46)20(47)26(51-13)41-11-38-16-22(30)34-9-36-24(16)41/h9-13,18-21,26-27,45-48H,3-8,29H2,(H,43,44)(H2,30,34,36)(H2,31,35,37)(H2,32,33,49)/t12-,13-,18-,19-,20-,21-,26-,27-/m1/s1" KGX InChIKey InChI 1.06 NHZDFSAEZKJJHU-GMIOVBLFSA-N KGX SMILES_CANONICAL CACTVS 3.385 "NCCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O" KGX SMILES CACTVS 3.385 "NCCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O" KGX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)NCCN)O)O)N)CC(=O)O)O)O)N" KGX SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)NCCN)O)O)N)CC(=O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id KGX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KGX "Create component" 2022-05-25 PDBE KGX "Modify descriptor" 2022-08-22 RCSB KGX "Initial release" 2023-01-11 RCSB #