data_KH0 # _chem_comp.id KH0 _chem_comp.name "~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H41 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(S,S,S)-13b; ketoamide inhibitor 13b (bound)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-14 _chem_comp.pdbx_modified_date 2023-08-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 595.687 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KH0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PRX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KH0 O26 O1 O 0 1 N N N 47.025 -14.953 7.140 -4.814 -1.465 0.178 O26 KH0 1 KH0 C24 C1 C 0 1 N N N 48.020 -14.390 6.736 -5.796 -0.951 0.677 C24 KH0 2 KH0 O25 O2 O 0 1 N N N 48.630 -14.590 5.549 -7.003 -1.533 0.539 O25 KH0 3 KH0 C27 C2 C 0 1 N N N 48.117 -15.573 4.563 -7.055 -2.771 -0.217 C27 KH0 4 KH0 C31 C3 C 0 1 N N N 47.537 -16.785 5.263 -6.168 -3.819 0.458 C31 KH0 5 KH0 C32 C4 C 0 1 N N N 47.084 -14.870 3.708 -8.498 -3.278 -0.265 C32 KH0 6 KH0 C33 C5 C 0 1 N N N 49.342 -15.936 3.750 -6.555 -2.521 -1.641 C33 KH0 7 KH0 N23 N1 N 0 1 N N N 48.724 -13.426 7.416 -5.676 0.197 1.372 N23 KH0 8 KH0 C19 C6 C 0 1 N N N 48.499 -12.852 8.683 -4.408 0.746 1.607 C19 KH0 9 KH0 C21 C7 C 0 1 N N N 49.444 -11.751 8.949 -3.576 1.110 0.526 C21 KH0 10 KH0 O22 O3 O 0 1 N N N 50.413 -11.538 8.218 -3.959 0.948 -0.622 O22 KH0 11 KH0 C18 C8 C 0 1 N N N 47.511 -13.148 9.585 -3.964 0.941 2.886 C18 KH0 12 KH0 C17 C9 C 0 1 N N N 47.390 -12.386 10.773 -2.691 1.492 3.093 C17 KH0 13 KH0 C16 C10 C 0 1 N N N 48.251 -11.371 11.017 -1.917 1.824 2.034 C16 KH0 14 KH0 N15 N2 N 0 1 N N N 49.255 -11.052 10.125 -2.359 1.637 0.762 N15 KH0 15 KH0 C20 C11 C 0 1 N N S 50.172 -9.945 10.437 -1.501 2.012 -0.365 C20 KH0 16 KH0 C22 C12 C 0 1 N N N 49.518 -8.766 11.160 -1.190 3.508 -0.293 C22 KH0 17 KH0 C29 C13 C 0 1 N N N 48.411 -8.073 10.378 -2.481 4.307 -0.483 C29 KH0 18 KH0 C34 C14 C 0 1 N N N 48.298 -6.591 10.507 -2.400 5.827 -0.327 C34 KH0 19 KH0 C30 C15 C 0 1 N N N 48.765 -7.198 9.222 -2.578 5.209 -1.715 C30 KH0 20 KH0 C36 C16 C 0 1 N N N 51.311 -10.451 11.303 -0.216 1.228 -0.300 C36 KH0 21 KH0 O37 O4 O 0 1 N N N 51.101 -10.980 12.391 -0.034 0.434 0.598 O37 KH0 22 KH0 N38 N3 N 0 1 N N N 52.531 -10.198 10.832 0.732 1.409 -1.241 N38 KH0 23 KH0 C40 C17 C 0 1 N N S 53.724 -10.486 11.603 1.933 0.570 -1.243 C40 KH0 24 KH0 C42 C18 C 0 1 N N N 54.516 -11.577 10.878 1.613 -0.777 -1.895 C42 KH0 25 KH0 C45 C19 C 0 1 N N S 53.788 -12.924 10.751 2.724 -1.777 -1.570 C45 KH0 26 KH0 C47 C20 C 0 1 N N N 54.497 -13.817 9.753 2.668 -2.175 -0.112 C47 KH0 27 KH0 O48 O5 O 0 1 N N N 54.756 -13.523 8.580 2.519 -1.405 0.813 O48 KH0 28 KH0 N49 N4 N 0 1 N N N 54.840 -14.945 10.380 2.806 -3.507 0.010 N49 KH0 29 KH0 C51 C21 C 0 1 N N N 54.810 -14.852 11.837 2.975 -4.147 -1.300 C51 KH0 30 KH0 C54 C22 C 0 1 N N N 53.704 -13.820 12.012 2.499 -3.103 -2.334 C54 KH0 31 KH0 C57 C23 C 0 1 N N S 54.544 -9.197 11.746 3.042 1.268 -2.031 C57 KH0 32 KH0 O40 O6 O 0 1 N N N 54.662 -8.715 10.430 2.691 1.306 -3.416 O40 KH0 33 KH0 C35 C24 C 0 1 N N N 55.909 -9.575 12.288 4.333 0.510 -1.860 C35 KH0 34 KH0 O41 O7 O 0 1 N N N 56.021 -9.936 13.458 4.877 0.014 -2.825 O41 KH0 35 KH0 N36 N5 N 0 1 N N N 56.922 -9.529 11.418 4.884 0.383 -0.637 N36 KH0 36 KH0 C13 C25 C 0 1 N N N 58.270 -9.961 11.765 6.139 -0.354 -0.471 C13 KH0 37 KH0 C14 C26 C 0 1 Y N N 58.413 -11.463 11.661 6.536 -0.349 0.983 C14 KH0 38 KH0 C28 C27 C 0 1 Y N N 58.044 -12.122 10.496 7.331 0.668 1.478 C28 KH0 39 KH0 C26 C28 C 0 1 Y N N 58.108 -13.504 10.417 7.696 0.673 2.811 C26 KH0 40 KH0 C25 C29 C 0 1 Y N N 58.544 -14.243 11.499 7.266 -0.339 3.649 C25 KH0 41 KH0 C23 C30 C 0 1 Y N N 58.917 -13.599 12.659 6.471 -1.356 3.154 C23 KH0 42 KH0 C15 C31 C 0 1 Y N N 58.854 -12.217 12.741 6.102 -1.358 1.821 C15 KH0 43 KH0 H1 H1 H 0 1 N N N 48.317 -17.266 5.872 -6.525 -3.997 1.473 H1 KH0 44 KH0 H2 H2 H 0 1 N N N 46.707 -16.471 5.913 -6.208 -4.749 -0.109 H2 KH0 45 KH0 H3 H3 H 0 1 N N N 47.166 -17.499 4.513 -5.141 -3.458 0.493 H3 KH0 46 KH0 H4 H4 H 0 1 N N N 46.207 -14.619 4.323 -8.854 -3.457 0.749 H4 KH0 47 KH0 H5 H5 H 0 1 N N N 47.517 -13.948 3.294 -9.130 -2.532 -0.746 H5 KH0 48 KH0 H6 H6 H 0 1 N N N 46.777 -15.533 2.885 -8.537 -4.208 -0.833 H6 KH0 49 KH0 H7 H7 H 0 1 N N N 50.074 -16.444 4.395 -6.594 -3.450 -2.209 H7 KH0 50 KH0 H8 H8 H 0 1 N N N 49.051 -16.606 2.928 -7.187 -1.774 -2.122 H8 KH0 51 KH0 H9 H9 H 0 1 N N N 49.791 -15.021 3.336 -5.527 -2.159 -1.607 H9 KH0 52 KH0 H10 H10 H 0 1 N N N 49.526 -13.075 6.933 -6.468 0.644 1.710 H10 KH0 53 KH0 H11 H11 H 0 1 N N N 46.826 -13.960 9.391 -4.586 0.674 3.727 H11 KH0 54 KH0 H12 H12 H 0 1 N N N 46.610 -12.615 11.484 -2.329 1.651 4.097 H12 KH0 55 KH0 H13 H13 H 0 1 N N N 48.151 -10.799 11.928 -0.938 2.249 2.202 H13 KH0 56 KH0 H14 H14 H 0 1 N N N 50.601 -9.569 9.497 -2.014 1.792 -1.301 H14 KH0 57 KH0 H15 H15 H 0 1 N N N 50.299 -8.023 11.379 -0.757 3.743 0.680 H15 KH0 58 KH0 H16 H16 H 0 1 N N N 49.090 -9.137 12.103 -0.481 3.770 -1.078 H16 KH0 59 KH0 H17 H17 H 0 1 N N N 47.465 -8.628 10.296 -3.393 3.815 -0.146 H17 KH0 60 KH0 H18 H18 H 0 1 N N N 49.005 -6.039 11.143 -3.259 6.334 0.112 H18 KH0 61 KH0 H19 H19 H 0 1 N N N 47.307 -6.118 10.564 -1.428 6.258 -0.089 H19 KH0 62 KH0 H20 H20 H 0 1 N N N 49.815 -7.092 8.913 -1.723 5.233 -2.391 H20 KH0 63 KH0 H21 H21 H 0 1 N N N 48.117 -7.171 8.333 -3.555 5.309 -2.190 H21 KH0 64 KH0 H22 H22 H 0 1 N N N 52.627 -9.798 9.920 0.619 2.095 -1.918 H22 KH0 65 KH0 H23 H23 H 0 1 N N N 53.449 -10.848 12.605 2.263 0.407 -0.217 H23 KH0 66 KH0 H24 H24 H 0 1 N N N 55.452 -11.745 11.430 0.664 -1.150 -1.512 H24 KH0 67 KH0 H25 H25 H 0 1 N N N 54.747 -11.216 9.865 1.544 -0.649 -2.976 H25 KH0 68 KH0 H26 H26 H 0 1 N N N 52.765 -12.735 10.392 3.699 -1.357 -1.816 H26 KH0 69 KH0 H27 H27 H 0 1 N N N 55.095 -15.781 9.894 2.794 -3.983 0.855 H27 KH0 70 KH0 H28 H28 H 0 1 N N N 54.549 -15.814 12.302 4.024 -4.392 -1.467 H28 KH0 71 KH0 H29 H29 H 0 1 N N N 55.768 -14.497 12.243 2.363 -5.047 -1.362 H29 KH0 72 KH0 H30 H30 H 0 1 N N N 53.872 -13.224 12.921 1.444 -3.242 -2.571 H30 KH0 73 KH0 H31 H31 H 0 1 N N N 52.722 -14.312 12.072 3.108 -3.142 -3.237 H31 KH0 74 KH0 H32 H32 H 0 1 N N N 54.038 -8.486 12.415 3.167 2.286 -1.660 H32 KH0 75 KH0 H33 H33 H 0 1 N N N 55.163 -7.908 10.432 2.565 0.434 -3.813 H33 KH0 76 KH0 H34 H34 H 0 1 N N N 56.749 -9.186 10.495 4.449 0.780 0.134 H34 KH0 77 KH0 H35 H35 H 0 1 N N N 58.986 -9.485 11.079 6.004 -1.382 -0.807 H35 KH0 78 KH0 H36 H36 H 0 1 N N N 58.490 -9.651 12.797 6.921 0.122 -1.063 H36 KH0 79 KH0 H37 H37 H 0 1 N N N 57.704 -11.552 9.644 7.667 1.459 0.824 H37 KH0 80 KH0 H38 H38 H 0 1 N N N 57.816 -14.005 9.506 8.317 1.467 3.198 H38 KH0 81 KH0 H39 H39 H 0 1 N N N 58.592 -15.320 11.437 7.552 -0.336 4.691 H39 KH0 82 KH0 H40 H40 H 0 1 N N N 59.260 -14.173 13.507 6.135 -2.147 3.808 H40 KH0 83 KH0 H41 H41 H 0 1 N N N 59.151 -11.721 13.654 5.478 -2.150 1.435 H41 KH0 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KH0 C32 C27 SING N N 1 KH0 C33 C27 SING N N 2 KH0 C27 C31 SING N N 3 KH0 C27 O25 SING N N 4 KH0 O25 C24 SING N N 5 KH0 C24 O26 DOUB N N 6 KH0 C24 N23 SING N N 7 KH0 N23 C19 SING N N 8 KH0 O22 C21 DOUB N N 9 KH0 O48 C47 DOUB N N 10 KH0 C19 C21 SING N N 11 KH0 C19 C18 DOUB N N 12 KH0 C21 N15 SING N N 13 KH0 C30 C29 SING N N 14 KH0 C30 C34 SING N N 15 KH0 C18 C17 SING N N 16 KH0 C47 N49 SING N N 17 KH0 C47 C45 SING N N 18 KH0 N15 C20 SING N N 19 KH0 N15 C16 SING N N 20 KH0 C29 C34 SING N N 21 KH0 C29 C22 SING N N 22 KH0 N49 C51 SING N N 23 KH0 C26 C28 DOUB Y N 24 KH0 C26 C25 SING Y N 25 KH0 O40 C57 SING N N 26 KH0 C20 C22 SING N N 27 KH0 C20 C36 SING N N 28 KH0 C28 C14 SING Y N 29 KH0 C45 C42 SING N N 30 KH0 C45 C54 SING N N 31 KH0 C17 C16 DOUB N N 32 KH0 N38 C36 SING N N 33 KH0 N38 C40 SING N N 34 KH0 C42 C40 SING N N 35 KH0 C36 O37 DOUB N N 36 KH0 N36 C13 SING N N 37 KH0 N36 C35 SING N N 38 KH0 C25 C23 DOUB Y N 39 KH0 C40 C57 SING N N 40 KH0 C14 C13 SING N N 41 KH0 C14 C15 DOUB Y N 42 KH0 C57 C35 SING N N 43 KH0 C51 C54 SING N N 44 KH0 C35 O41 DOUB N N 45 KH0 C23 C15 SING Y N 46 KH0 C31 H1 SING N N 47 KH0 C31 H2 SING N N 48 KH0 C31 H3 SING N N 49 KH0 C32 H4 SING N N 50 KH0 C32 H5 SING N N 51 KH0 C32 H6 SING N N 52 KH0 C33 H7 SING N N 53 KH0 C33 H8 SING N N 54 KH0 C33 H9 SING N N 55 KH0 N23 H10 SING N N 56 KH0 C18 H11 SING N N 57 KH0 C17 H12 SING N N 58 KH0 C16 H13 SING N N 59 KH0 C20 H14 SING N N 60 KH0 C22 H15 SING N N 61 KH0 C22 H16 SING N N 62 KH0 C29 H17 SING N N 63 KH0 C34 H18 SING N N 64 KH0 C34 H19 SING N N 65 KH0 C30 H20 SING N N 66 KH0 C30 H21 SING N N 67 KH0 N38 H22 SING N N 68 KH0 C40 H23 SING N N 69 KH0 C42 H24 SING N N 70 KH0 C42 H25 SING N N 71 KH0 C45 H26 SING N N 72 KH0 N49 H27 SING N N 73 KH0 C51 H28 SING N N 74 KH0 C51 H29 SING N N 75 KH0 C54 H30 SING N N 76 KH0 C54 H31 SING N N 77 KH0 C57 H32 SING N N 78 KH0 O40 H33 SING N N 79 KH0 N36 H34 SING N N 80 KH0 C13 H35 SING N N 81 KH0 C13 H36 SING N N 82 KH0 C28 H37 SING N N 83 KH0 C26 H38 SING N N 84 KH0 C25 H39 SING N N 85 KH0 C23 H40 SING N N 86 KH0 C15 H41 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KH0 InChI InChI 1.06 "InChI=1S/C31H41N5O7/c1-31(2,3)43-30(42)35-22-10-7-15-36(29(22)41)24(16-19-11-12-19)27(39)34-23(17-21-13-14-32-26(21)38)25(37)28(40)33-18-20-8-5-4-6-9-20/h4-10,15,19,21,23-25,37H,11-14,16-18H2,1-3H3,(H,32,38)(H,33,40)(H,34,39)(H,35,42)/t21-,23-,24-,25-/m0/s1" KH0 InChIKey InChI 1.06 FRACPXUHUTXLCX-LFBFJMOVSA-N KH0 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)NC1=CC=CN([C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)C(=O)NCc4ccccc4)C1=O" KH0 SMILES CACTVS 3.385 "CC(C)(C)OC(=O)NC1=CC=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NCc4ccccc4)C1=O" KH0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC=CN(C1=O)[C@@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](C(=O)NCc4ccccc4)O" KH0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)NC1=CC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NCc4ccccc4)O" # _pdbx_chem_comp_identifier.comp_id KH0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 KH0 "(S,S,S)-13b" AUTHOR ? 2 KH0 "ketoamide inhibitor 13b (bound)" AUTHOR ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KH0 "Create component" 2023-08-14 PDBE KH0 "Initial release" 2023-08-23 RCSB #