data_KH9 # _chem_comp.id KH9 _chem_comp.name "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 N14 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 726.700 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KH9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KH9 N1 N1 N 0 1 N N N 15.190 5.775 10.976 3.128 4.896 -0.450 N1 KH9 1 KH9 C7 C1 C 0 1 N N R 18.639 9.260 15.430 2.525 -1.869 -2.060 C7 KH9 2 KH9 C8 C2 C 0 1 N N S 18.489 7.765 15.696 2.038 -0.632 -2.852 C8 KH9 3 KH9 N2 N2 N 0 1 N N N 16.529 6.831 12.493 2.904 2.757 -1.358 N2 KH9 4 KH9 C9 C3 C 0 1 Y N N 18.560 11.307 12.816 3.846 -2.002 0.851 C9 KH9 5 KH9 O1 O1 O 0 1 N N N 18.982 8.089 13.413 3.789 -0.026 -1.327 O1 KH9 6 KH9 C1 C4 C 0 1 N N N 12.815 5.867 10.295 3.621 7.110 0.463 C1 KH9 7 KH9 O5 O2 O 0 1 N N N 17.791 10.324 7.959 -5.324 2.400 -1.156 O5 KH9 8 KH9 C5 C5 C 0 1 N N R 18.221 7.227 14.292 2.929 0.518 -2.342 C5 KH9 9 KH9 C6 C6 C 0 1 N N R 19.492 9.186 14.162 3.944 -1.432 -1.615 C6 KH9 10 KH9 N3 N3 N 0 1 Y N N 19.584 10.426 13.350 4.356 -2.162 -0.413 N3 KH9 11 KH9 C4 C7 C 0 1 N N N 16.769 7.282 13.858 2.057 1.626 -1.747 C4 KH9 12 KH9 O4 O3 O 0 1 N N N 15.830 8.411 9.936 -3.156 0.056 0.377 O4 KH9 13 KH9 C3 C8 C 0 1 N N N 15.694 5.804 12.231 2.350 3.855 -0.808 C3 KH9 14 KH9 O3 O4 O 0 1 N N N 19.699 7.228 16.221 2.231 -0.828 -4.255 O3 KH9 15 KH9 C2 C9 C 0 1 N N N 14.012 4.989 10.636 2.526 6.087 0.154 C2 KH9 16 KH9 N4 N4 N 0 1 Y N N 19.064 12.379 12.169 4.451 -2.822 1.678 N4 KH9 17 KH9 N N5 N 0 1 N N N 12.323 7.308 8.320 4.044 9.337 1.390 N KH9 18 KH9 C C10 C 0 1 N N N 12.489 5.930 8.813 2.993 8.355 1.094 C KH9 19 KH9 O O5 O 0 1 N N N 15.373 4.985 13.092 1.147 3.908 -0.634 O KH9 20 KH9 C10 C11 C 0 1 Y N N 20.477 12.223 12.280 5.370 -3.545 1.001 C10 KH9 21 KH9 C11 C12 C 0 1 Y N N 21.575 12.995 11.851 6.291 -4.549 1.355 C11 KH9 22 KH9 C12 C13 C 0 1 Y N N 22.971 11.430 12.818 6.986 -4.639 -0.844 C12 KH9 23 KH9 C13 C14 C 0 1 Y N N 20.787 11.019 13.007 5.322 -3.134 -0.343 C13 KH9 24 KH9 C14 C15 C 0 1 N N N 17.264 10.802 12.634 2.815 -1.076 1.214 C14 KH9 25 KH9 C15 C16 C 0 1 N N N 16.104 10.663 12.884 1.970 -0.317 1.512 C15 KH9 26 KH9 C16 C17 C 0 1 N N N 14.669 10.369 13.035 0.911 0.634 1.885 C16 KH9 27 KH9 C17 C18 C 0 1 N N N 14.051 9.887 10.669 -1.331 1.366 1.334 C17 KH9 28 KH9 C18 C19 C 0 1 N N R 15.366 9.774 9.919 -2.388 1.271 0.233 C18 KH9 29 KH9 C19 C20 C 0 1 N N R 16.895 8.326 9.007 -4.383 0.294 -0.347 C19 KH9 30 KH9 C20 C21 C 0 1 N N R 16.683 9.433 7.960 -4.763 1.753 -0.012 C20 KH9 31 KH9 C21 C22 C 0 1 N N S 15.411 10.145 8.444 -3.421 2.411 0.378 C21 KH9 32 KH9 C22 C23 C 0 1 Y N N 15.916 6.319 7.798 -5.483 -1.252 1.317 C22 KH9 33 KH9 C23 C24 C 0 1 Y N N 17.592 5.022 7.688 -7.249 -1.887 0.230 C23 KH9 34 KH9 C24 C25 C 0 1 Y N N 18.554 4.020 7.457 -8.444 -2.443 -0.256 C24 KH9 35 KH9 C25 C26 C 0 1 Y N N 20.063 5.354 8.592 -8.136 -1.291 -2.232 C25 KH9 36 KH9 C26 C27 C 0 1 Y N N 18.018 6.145 8.383 -6.535 -1.014 -0.607 C26 KH9 37 KH9 C27 C28 C 0 1 N N N 13.004 8.668 12.570 -0.828 -0.998 1.467 C27 KH9 38 KH9 C28 C29 C 0 1 N N N 11.675 9.372 12.732 -1.286 -1.004 2.902 C28 KH9 39 KH9 N10 N6 N 0 1 Y N N 16.261 5.146 7.331 -6.552 -1.991 1.387 N10 KH9 40 KH9 N11 N7 N 0 1 N N N 18.304 2.890 6.785 -9.191 -3.309 0.523 N11 KH9 41 KH9 N12 N8 N 0 1 Y N N 19.802 4.224 7.929 -8.841 -2.117 -1.482 N12 KH9 42 KH9 N13 N9 N 0 1 Y N N 19.244 6.369 8.870 -7.011 -0.747 -1.819 N13 KH9 43 KH9 N5 N10 N 0 1 N N N 21.450 14.143 11.176 6.384 -4.994 2.662 N5 KH9 44 KH9 N6 N11 N 0 1 Y N N 22.824 12.568 12.138 7.069 -5.058 0.406 N6 KH9 45 KH9 N7 N12 N 0 1 Y N N 22.028 10.609 13.282 6.141 -3.704 -1.222 N7 KH9 46 KH9 N8 N13 N 0 1 N N N 14.155 9.412 12.057 -0.309 0.332 1.123 N8 KH9 47 KH9 N9 N14 N 0 1 Y N N 16.930 6.983 8.442 -5.429 -0.626 0.107 N9 KH9 48 KH9 O2 O6 O 0 1 N N N 19.328 9.954 16.463 2.588 -3.022 -2.902 O2 KH9 49 KH9 O6 O7 O 0 1 N N N 15.529 11.551 8.246 -3.111 3.484 -0.513 O6 KH9 50 KH9 O7 O8 O 0 1 N N N 11.697 10.670 12.588 -1.131 -0.023 3.590 O7 KH9 51 KH9 O8 O9 O 0 1 N N N 10.663 8.755 12.987 -1.867 -2.099 3.417 O8 KH9 52 KH9 H1 H1 H 0 1 N N N 15.640 6.309 10.260 4.087 4.854 -0.589 H1 KH9 53 KH9 H2 H2 H 0 1 N N N 17.661 9.712 15.209 1.886 -2.054 -1.197 H2 KH9 54 KH9 H3 H3 H 0 1 N N N 17.629 7.573 16.355 0.989 -0.429 -2.637 H3 KH9 55 KH9 H4 H4 H 0 1 N N N 16.992 7.292 11.736 3.863 2.715 -1.497 H4 KH9 56 KH9 H5 H5 H 0 1 N N N 13.026 6.888 10.645 4.340 6.675 1.157 H5 KH9 57 KH9 H6 H6 H 0 1 N N N 11.936 5.472 10.825 4.130 7.388 -0.460 H6 KH9 58 KH9 H7 H7 H 0 1 N N N 18.566 9.866 7.657 -5.525 3.335 -1.020 H7 KH9 59 KH9 H8 H8 H 0 1 N N N 18.585 6.191 14.224 3.528 0.914 -3.161 H8 KH9 60 KH9 H9 H9 H 0 1 N N N 20.513 8.932 14.483 4.662 -1.582 -2.421 H9 KH9 61 KH9 H10 H10 H 0 1 N N N 16.425 8.323 13.941 1.534 1.246 -0.870 H10 KH9 62 KH9 H11 H11 H 0 1 N N N 16.183 6.646 14.538 1.331 1.955 -2.490 H11 KH9 63 KH9 H12 H12 H 0 1 N N N 19.847 7.574 17.093 1.738 -1.577 -4.618 H12 KH9 64 KH9 H13 H13 H 0 1 N N N 13.751 4.352 11.494 1.808 6.523 -0.540 H13 KH9 65 KH9 H14 H14 H 0 1 N N N 14.247 4.356 9.767 2.018 5.809 1.077 H14 KH9 66 KH9 H15 H15 H 0 1 N N N 12.111 7.290 7.343 3.654 10.169 1.808 H15 KH9 67 KH9 H16 H16 H 0 1 N N N 11.576 7.751 8.815 4.757 8.936 1.981 H16 KH9 68 KH9 H18 H18 H 0 1 N N N 11.554 5.379 8.636 2.274 8.790 0.400 H18 KH9 69 KH9 H19 H19 H 0 1 N N N 13.307 5.453 8.253 2.484 8.077 2.017 H19 KH9 70 KH9 H20 H20 H 0 1 N N N 23.990 11.134 13.020 7.638 -5.081 -1.584 H20 KH9 71 KH9 H21 H21 H 0 1 N N N 14.109 11.310 12.926 0.704 0.548 2.951 H21 KH9 72 KH9 H22 H22 H 0 1 N N N 14.504 9.958 14.042 1.238 1.649 1.659 H22 KH9 73 KH9 H23 H23 H 0 1 N N N 13.739 10.942 10.679 -0.863 2.351 1.305 H23 KH9 74 KH9 H24 H24 H 0 1 N N N 13.293 9.286 10.146 -1.803 1.218 2.306 H24 KH9 75 KH9 H25 H25 H 0 1 N N N 16.102 10.402 10.442 -1.916 1.307 -0.749 H25 KH9 76 KH9 H26 H26 H 0 1 N N N 17.848 8.523 9.520 -4.219 0.181 -1.419 H26 KH9 77 KH9 H27 H27 H 0 1 N N N 16.514 8.988 6.968 -5.462 1.785 0.824 H27 KH9 78 KH9 H28 H28 H 0 1 N N N 14.532 9.736 7.924 -3.455 2.766 1.408 H28 KH9 79 KH9 H29 H29 H 0 1 N N N 14.923 6.728 7.687 -4.750 -1.146 2.103 H29 KH9 80 KH9 H30 H30 H 0 1 N N N 21.076 5.460 8.952 -8.495 -1.053 -3.223 H30 KH9 81 KH9 H31 H31 H 0 1 N N N 12.838 7.824 11.885 -0.041 -1.741 1.334 H31 KH9 82 KH9 H32 H32 H 0 1 N N N 13.286 8.285 13.562 -1.668 -1.240 0.816 H32 KH9 83 KH9 H33 H33 H 0 1 N N N 19.137 2.339 6.736 -8.891 -3.539 1.416 H33 KH9 84 KH9 H34 H34 H 0 1 N N N 17.590 2.373 7.257 -10.015 -3.687 0.176 H34 KH9 85 KH9 H35 H35 H 0 1 N N N 22.357 14.518 10.984 7.023 -5.687 2.894 H35 KH9 86 KH9 H36 H36 H 0 1 N N N 20.971 13.973 10.315 5.811 -4.614 3.346 H36 KH9 87 KH9 H38 H38 H 0 1 N N N 18.783 9.989 17.240 1.735 -3.280 -3.279 H38 KH9 88 KH9 H39 H39 H 0 1 N N N 14.738 11.981 8.548 -3.760 4.200 -0.507 H39 KH9 89 KH9 H40 H40 H 0 1 N N N 9.933 9.359 13.058 -2.145 -2.055 4.342 H40 KH9 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KH9 N11 C24 SING N N 1 KH9 N10 C23 SING Y N 2 KH9 N10 C22 DOUB Y N 3 KH9 C24 C23 DOUB Y N 4 KH9 C24 N12 SING Y N 5 KH9 C23 C26 SING Y N 6 KH9 C22 N9 SING Y N 7 KH9 N12 C25 DOUB Y N 8 KH9 O5 C20 SING N N 9 KH9 C20 C21 SING N N 10 KH9 C20 C19 SING N N 11 KH9 O6 C21 SING N N 12 KH9 N C SING N N 13 KH9 C26 N9 SING Y N 14 KH9 C26 N13 DOUB Y N 15 KH9 N9 C19 SING N N 16 KH9 C21 C18 SING N N 17 KH9 C25 N13 SING Y N 18 KH9 C C1 SING N N 19 KH9 C19 O4 SING N N 20 KH9 C18 O4 SING N N 21 KH9 C18 C17 SING N N 22 KH9 C1 C2 SING N N 23 KH9 C2 N1 SING N N 24 KH9 C17 N8 SING N N 25 KH9 N1 C3 SING N N 26 KH9 N5 C11 SING N N 27 KH9 C11 N6 DOUB Y N 28 KH9 C11 C10 SING Y N 29 KH9 N8 C27 SING N N 30 KH9 N8 C16 SING N N 31 KH9 N6 C12 SING Y N 32 KH9 N4 C10 SING Y N 33 KH9 N4 C9 DOUB Y N 34 KH9 C3 N2 SING N N 35 KH9 C3 O DOUB N N 36 KH9 C10 C13 DOUB Y N 37 KH9 N2 C4 SING N N 38 KH9 C27 C28 SING N N 39 KH9 O7 C28 DOUB N N 40 KH9 C14 C9 SING N N 41 KH9 C14 C15 TRIP N N 42 KH9 C28 O8 SING N N 43 KH9 C9 N3 SING Y N 44 KH9 C12 N7 DOUB Y N 45 KH9 C15 C16 SING N N 46 KH9 C13 N7 SING Y N 47 KH9 C13 N3 SING Y N 48 KH9 N3 C6 SING N N 49 KH9 O1 C6 SING N N 50 KH9 O1 C5 SING N N 51 KH9 C4 C5 SING N N 52 KH9 C6 C7 SING N N 53 KH9 C5 C8 SING N N 54 KH9 C7 C8 SING N N 55 KH9 C7 O2 SING N N 56 KH9 C8 O3 SING N N 57 KH9 N1 H1 SING N N 58 KH9 C7 H2 SING N N 59 KH9 C8 H3 SING N N 60 KH9 N2 H4 SING N N 61 KH9 C1 H5 SING N N 62 KH9 C1 H6 SING N N 63 KH9 O5 H7 SING N N 64 KH9 C5 H8 SING N N 65 KH9 C6 H9 SING N N 66 KH9 C4 H10 SING N N 67 KH9 C4 H11 SING N N 68 KH9 O3 H12 SING N N 69 KH9 C2 H13 SING N N 70 KH9 C2 H14 SING N N 71 KH9 N H15 SING N N 72 KH9 N H16 SING N N 73 KH9 C H18 SING N N 74 KH9 C H19 SING N N 75 KH9 C12 H20 SING N N 76 KH9 C16 H21 SING N N 77 KH9 C16 H22 SING N N 78 KH9 C17 H23 SING N N 79 KH9 C17 H24 SING N N 80 KH9 C18 H25 SING N N 81 KH9 C19 H26 SING N N 82 KH9 C20 H27 SING N N 83 KH9 C21 H28 SING N N 84 KH9 C22 H29 SING N N 85 KH9 C25 H30 SING N N 86 KH9 C27 H31 SING N N 87 KH9 C27 H32 SING N N 88 KH9 N11 H33 SING N N 89 KH9 N11 H34 SING N N 90 KH9 N5 H35 SING N N 91 KH9 N5 H36 SING N N 92 KH9 O2 H38 SING N N 93 KH9 O6 H39 SING N N 94 KH9 O8 H40 SING N N 95 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KH9 InChI InChI 1.06 "InChI=1S/C29H38N14O9/c30-4-2-5-33-29(50)34-7-13-19(46)22(49)28(51-13)43-15(40-18-24(32)36-11-38-26(18)43)3-1-6-41(9-16(44)45)8-14-20(47)21(48)27(52-14)42-12-39-17-23(31)35-10-37-25(17)42/h10-14,19-22,27-28,46-49H,2,4-9,30H2,(H,44,45)(H2,31,35,37)(H2,32,36,38)(H2,33,34,50)/t13-,14-,19-,20-,21-,22-,27-,28-/m1/s1" KH9 InChIKey InChI 1.06 PFWXIFMXYVCTQE-CGZJSAOLSA-N KH9 SMILES_CANONICAL CACTVS 3.385 "NCCCNC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O" KH9 SMILES CACTVS 3.385 "NCCCNC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O" KH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)NCCCN)O)O)N)CC(=O)O)O)O)N" KH9 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)NCCCN)O)O)N)CC(=O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id KH9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KH9 "Create component" 2022-05-25 PDBE KH9 "Modify descriptor" 2022-08-22 RCSB KH9 "Initial release" 2023-01-11 RCSB #