data_KHL # _chem_comp.id KHL _chem_comp.name "(1~{R},24~{R},25~{S},26~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-25,26-bis(oxidanyl)-27-oxa-2,4,6,9,14,17,20,22-octazatetracyclo[22.2.1.0^{2,10}.0^{3,8}]heptacosa-3(8),4,6,9-tetraen-11-yne-16,21-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H34 N14 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 694.659 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KHL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KHL C10 C1 C 0 1 N N N 17.443 6.534 14.035 4.550 2.862 0.970 C10 KHL 1 KHL C13 C2 C 0 1 N N R 19.753 9.331 14.092 3.645 -0.594 1.530 C13 KHL 2 KHL C15 C3 C 0 1 Y N N 18.669 11.402 12.833 2.784 -1.718 -0.578 C15 KHL 3 KHL C17 C4 C 0 1 N N N 15.977 10.737 13.135 0.802 -0.398 -1.552 C17 KHL 4 KHL C20 C5 C 0 1 N N N 12.769 8.657 12.468 -0.565 2.051 -3.190 C20 KHL 5 KHL C21 C6 C 0 1 N N N 14.059 9.822 10.636 -2.316 0.379 -3.140 C21 KHL 6 KHL C22 C7 C 0 1 N N R 15.579 9.906 9.985 -2.867 -0.794 -2.327 C22 KHL 7 KHL C24 C8 C 0 1 N N R 17.272 8.319 9.128 -4.331 -1.109 -0.561 C24 KHL 8 KHL C26 C9 C 0 1 N N S 15.640 10.091 8.512 -4.179 -1.298 -2.958 C26 KHL 9 KHL C02 C10 C 0 1 N N N 12.674 7.108 12.009 -0.592 3.134 -2.143 C02 KHL 10 KHL C04 C11 C 0 1 N N N 13.423 5.012 10.689 0.049 5.274 -1.263 C04 KHL 11 KHL C05 C12 C 0 1 N N N 14.163 4.036 11.656 1.428 5.910 -1.076 C05 KHL 12 KHL C07 C13 C 0 1 N N N 16.362 5.278 11.997 2.980 4.433 0.031 C07 KHL 13 KHL C11 C14 C 0 1 N N R 18.854 7.184 14.352 4.099 1.677 1.821 C11 KHL 14 KHL C16 C15 C 0 1 N N N 17.147 11.028 13.004 1.674 -0.845 -0.856 C16 KHL 15 KHL C18 C16 C 0 1 N N N 14.530 10.361 13.235 -0.012 -0.268 -2.781 C18 KHL 16 KHL C25 C17 C 0 1 N N R 16.937 9.315 8.024 -5.225 -1.151 -1.826 C25 KHL 17 KHL C30 C18 C 0 1 Y N N 16.259 6.438 7.726 -4.952 0.917 0.810 C30 KHL 18 KHL C32 C19 C 0 1 Y N N 17.869 4.889 7.640 -6.248 0.051 2.318 C32 KHL 19 KHL C33 C20 C 0 1 Y N N 18.372 5.980 8.420 -5.834 -0.993 1.473 C33 KHL 20 KHL C35 C21 C 0 1 Y N N 20.383 4.889 8.744 -7.073 -2.472 2.721 C35 KHL 21 KHL C37 C22 C 0 1 Y N N 18.751 3.742 7.440 -7.108 -0.261 3.384 C37 KHL 22 KHL C40 C23 C 0 1 Y N N 20.648 12.446 12.288 4.193 -3.361 -0.783 C40 KHL 23 KHL C41 C24 C 0 1 Y N N 21.035 11.266 12.988 4.603 -2.595 0.323 C41 KHL 24 KHL C43 C25 C 0 1 Y N N 23.274 11.742 12.782 6.397 -4.003 0.606 C43 KHL 25 KHL C45 C26 C 0 1 Y N N 21.753 13.325 11.806 4.958 -4.491 -1.130 C45 KHL 26 KHL C47 C27 C 0 1 N N R 18.904 9.414 15.389 5.010 -0.550 2.240 C47 KHL 27 KHL C48 C28 C 0 1 N N S 18.817 7.937 15.679 5.322 0.951 2.410 C48 KHL 28 KHL N03 N1 N 0 1 N N N 13.566 6.468 11.100 0.137 4.272 -2.352 N03 KHL 29 KHL N06 N2 N 0 1 N N N 15.137 4.800 12.512 2.027 5.396 0.173 N06 KHL 30 KHL N09 N3 N 0 1 N N N 17.406 6.024 12.595 3.587 3.968 1.158 N09 KHL 31 KHL N14 N4 N 0 1 Y N N 19.791 10.598 13.340 3.675 -1.588 0.457 N14 KHL 32 KHL N19 N5 N 0 1 N N N 14.044 9.337 12.036 -1.015 0.786 -2.593 N19 KHL 33 KHL N29 N6 N 0 1 Y N N 17.328 6.980 8.468 -5.014 -0.417 0.535 N29 KHL 34 KHL N31 N7 N 0 1 Y N N 16.550 5.216 7.232 -5.677 1.189 1.856 N31 KHL 35 KHL N34 N8 N 0 1 Y N N 19.633 5.994 8.981 -6.267 -2.226 1.710 N34 KHL 36 KHL N36 N9 N 0 1 Y N N 19.994 3.774 8.008 -7.489 -1.525 3.542 N36 KHL 37 KHL N38 N10 N 0 1 N N N 18.322 2.609 6.672 -7.549 0.725 4.250 N38 KHL 38 KHL N39 N11 N 0 1 Y N N 19.209 12.482 12.222 3.087 -2.777 -1.291 N39 KHL 39 KHL N42 N12 N 0 1 Y N N 22.346 10.892 13.252 5.704 -2.948 0.978 N42 KHL 40 KHL N44 N13 N 0 1 Y N N 23.042 12.927 12.083 6.044 -4.763 -0.412 N44 KHL 41 KHL N46 N14 N 0 1 N N N 21.511 14.521 11.093 4.589 -5.299 -2.191 N46 KHL 42 KHL O01 O1 O 0 1 N N N 11.735 6.479 12.504 -1.249 2.998 -1.132 O01 KHL 43 KHL O08 O2 O 0 1 N N N 16.492 4.940 10.839 3.279 4.002 -1.066 O08 KHL 44 KHL O12 O3 O 0 1 N N N 19.283 8.188 13.399 3.393 0.720 1.012 O12 KHL 45 KHL O23 O4 O 0 1 N N N 16.249 8.532 10.101 -3.173 -0.361 -0.991 O23 KHL 46 KHL O27 O5 O 0 1 N N N 15.720 11.449 8.271 -4.052 -2.666 -3.350 O27 KHL 47 KHL O28 O6 O 0 1 N N N 18.048 10.126 7.900 -6.103 -2.278 -1.793 O28 KHL 48 KHL O49 O7 O 0 1 N N N 19.907 7.541 16.498 5.474 1.274 3.794 O49 KHL 49 KHL O50 O8 O 0 1 N N N 19.458 10.081 16.477 4.928 -1.189 3.515 O50 KHL 50 KHL H1 H1 H 0 1 N N N 16.656 7.290 14.173 5.542 3.184 1.286 H1 KHL 51 KHL H2 H2 H 0 1 N N N 17.268 5.693 14.722 4.576 2.571 -0.080 H2 KHL 52 KHL H3 H3 H 0 1 N N N 20.783 9.122 14.417 2.869 -0.850 2.252 H3 KHL 53 KHL H4 H4 H 0 1 N N N 11.919 9.202 12.032 -1.229 2.322 -4.011 H4 KHL 54 KHL H5 H5 H 0 1 N N N 12.707 8.699 13.565 0.451 1.934 -3.567 H5 KHL 55 KHL H6 H6 H 0 1 N N N 13.613 10.827 10.610 -2.193 0.075 -4.180 H6 KHL 56 KHL H7 H7 H 0 1 N N N 13.455 9.137 10.023 -3.011 1.217 -3.087 H7 KHL 57 KHL H8 H8 H 0 1 N N N 16.161 10.674 10.515 -2.134 -1.600 -2.296 H8 KHL 58 KHL H9 H9 H 0 1 N N N 18.259 8.564 9.547 -4.046 -2.116 -0.258 H9 KHL 59 KHL H10 H10 H 0 1 N N N 14.756 9.642 8.035 -4.453 -0.681 -3.813 H10 KHL 60 KHL H11 H11 H 0 1 N N N 12.354 4.753 10.678 -0.257 4.784 -0.339 H11 KHL 61 KHL H12 H12 H 0 1 N N N 13.840 4.889 9.679 -0.675 6.043 -1.531 H12 KHL 62 KHL H13 H13 H 0 1 N N N 13.427 3.534 12.301 2.067 5.653 -1.920 H13 KHL 63 KHL H14 H14 H 0 1 N N N 14.708 3.283 11.067 1.324 6.994 -1.012 H14 KHL 64 KHL H15 H15 H 0 1 N N N 19.600 6.378 14.416 3.453 2.018 2.631 H15 KHL 65 KHL H16 H16 H 0 1 N N N 13.925 11.278 13.179 0.635 -0.010 -3.619 H16 KHL 66 KHL H17 H17 H 0 1 N N N 14.362 9.870 14.205 -0.513 -1.214 -2.986 H17 KHL 67 KHL H18 H18 H 0 1 N N N 16.708 8.779 7.091 -5.788 -0.224 -1.935 H18 KHL 68 KHL H19 H19 H 0 1 N N N 15.317 6.942 7.571 -4.383 1.640 0.245 H19 KHL 69 KHL H20 H20 H 0 1 N N N 21.377 4.873 9.167 -7.407 -3.486 2.886 H20 KHL 70 KHL H21 H21 H 0 1 N N N 24.306 11.481 12.964 7.290 -4.256 1.156 H21 KHL 71 KHL H22 H22 H 0 1 N N N 17.905 9.804 15.143 5.772 -1.028 1.625 H22 KHL 72 KHL H23 H23 H 0 1 N N N 17.863 7.724 16.183 6.224 1.217 1.858 H23 KHL 73 KHL H24 H24 H 0 1 N N N 14.320 7.001 10.715 0.669 4.412 -3.151 H24 KHL 74 KHL H25 H25 H 0 1 N N N 14.911 4.974 13.470 1.757 5.726 1.045 H25 KHL 75 KHL H26 H26 H 0 1 N N N 18.195 6.238 12.020 3.398 4.341 2.034 H26 KHL 76 KHL H28 H28 H 0 1 N N N 19.052 1.926 6.648 -7.264 1.643 4.124 H28 KHL 77 KHL H29 H29 H 0 1 N N N 17.507 2.211 7.093 -8.143 0.497 4.982 H29 KHL 78 KHL H30 H30 H 0 1 N N N 22.382 14.956 10.865 5.125 -6.075 -2.419 H30 KHL 79 KHL H31 H31 H 0 1 N N N 21.013 14.312 10.251 3.795 -5.089 -2.707 H31 KHL 80 KHL H32 H32 H 0 1 N N N 14.927 11.873 8.577 -4.849 -3.036 -3.753 H32 KHL 81 KHL H33 H33 H 0 1 N N N 18.788 9.608 7.606 -6.619 -2.399 -2.602 H33 KHL 82 KHL H34 H34 H 0 1 N N N 19.874 8.015 17.321 6.229 0.845 4.218 H34 KHL 83 KHL H35 H35 H 0 1 N N N 18.847 10.064 17.204 5.760 -1.191 4.008 H35 KHL 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KHL N38 C37 SING N N 1 KHL N31 C32 SING Y N 2 KHL N31 C30 DOUB Y N 3 KHL C37 C32 DOUB Y N 4 KHL C37 N36 SING Y N 5 KHL C32 C33 SING Y N 6 KHL C30 N29 SING Y N 7 KHL O28 C25 SING N N 8 KHL N36 C35 DOUB Y N 9 KHL C25 C26 SING N N 10 KHL C25 C24 SING N N 11 KHL O27 C26 SING N N 12 KHL C33 N29 SING Y N 13 KHL C33 N34 DOUB Y N 14 KHL N29 C24 SING N N 15 KHL C26 C22 SING N N 16 KHL C35 N34 SING Y N 17 KHL C24 O23 SING N N 18 KHL C22 O23 SING N N 19 KHL C22 C21 SING N N 20 KHL C21 N19 SING N N 21 KHL C04 N03 SING N N 22 KHL C04 C05 SING N N 23 KHL O08 C07 DOUB N N 24 KHL N46 C45 SING N N 25 KHL N03 C02 SING N N 26 KHL C05 N06 SING N N 27 KHL C45 N44 DOUB Y N 28 KHL C45 C40 SING Y N 29 KHL C07 N06 SING N N 30 KHL C07 N09 SING N N 31 KHL C02 C20 SING N N 32 KHL C02 O01 DOUB N N 33 KHL N19 C20 SING N N 34 KHL N19 C18 SING N N 35 KHL N44 C43 SING Y N 36 KHL N39 C40 SING Y N 37 KHL N39 C15 DOUB Y N 38 KHL C40 C41 DOUB Y N 39 KHL N09 C10 SING N N 40 KHL C43 N42 DOUB Y N 41 KHL C15 C16 SING N N 42 KHL C15 N14 SING Y N 43 KHL C41 N42 SING Y N 44 KHL C41 N14 SING Y N 45 KHL C16 C17 TRIP N N 46 KHL C17 C18 SING N N 47 KHL N14 C13 SING N N 48 KHL O12 C13 SING N N 49 KHL O12 C11 SING N N 50 KHL C10 C11 SING N N 51 KHL C13 C47 SING N N 52 KHL C11 C48 SING N N 53 KHL C47 C48 SING N N 54 KHL C47 O50 SING N N 55 KHL C48 O49 SING N N 56 KHL C10 H1 SING N N 57 KHL C10 H2 SING N N 58 KHL C13 H3 SING N N 59 KHL C20 H4 SING N N 60 KHL C20 H5 SING N N 61 KHL C21 H6 SING N N 62 KHL C21 H7 SING N N 63 KHL C22 H8 SING N N 64 KHL C24 H9 SING N N 65 KHL C26 H10 SING N N 66 KHL C04 H11 SING N N 67 KHL C04 H12 SING N N 68 KHL C05 H13 SING N N 69 KHL C05 H14 SING N N 70 KHL C11 H15 SING N N 71 KHL C18 H16 SING N N 72 KHL C18 H17 SING N N 73 KHL C25 H18 SING N N 74 KHL C30 H19 SING N N 75 KHL C35 H20 SING N N 76 KHL C43 H21 SING N N 77 KHL C47 H22 SING N N 78 KHL C48 H23 SING N N 79 KHL N03 H24 SING N N 80 KHL N06 H25 SING N N 81 KHL N09 H26 SING N N 82 KHL N38 H28 SING N N 83 KHL N38 H29 SING N N 84 KHL N46 H30 SING N N 85 KHL N46 H31 SING N N 86 KHL O27 H32 SING N N 87 KHL O28 H33 SING N N 88 KHL O49 H34 SING N N 89 KHL O50 H35 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KHL InChI InChI 1.06 "InChI=1S/C28H34N14O8/c29-22-16-24(36-9-34-22)41(11-38-16)26-20(46)19(45)13(50-26)7-40-5-1-2-14-39-17-23(30)35-10-37-25(17)42(14)27-21(47)18(44)12(49-27)6-33-28(48)32-4-3-31-15(43)8-40/h9-13,18-21,26-27,44-47H,3-8H2,(H,31,43)(H2,29,34,36)(H2,30,35,37)(H2,32,33,48)/t12-,13-,18-,19-,20-,21-,26-,27-/m1/s1" KHL InChIKey InChI 1.06 SLVFONSSAAMYJB-GMIOVBLFSA-N KHL SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CC#Cc5nc6c(N)ncnc6n5[C@@H]7O[C@H](CNC(=O)NCCNC(=O)C4)[C@@H](O)[C@H]7O)[C@@H](O)[C@H]3O" KHL SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CC#Cc5nc6c(N)ncnc6n5[CH]7O[CH](CNC(=O)NCCNC(=O)C4)[CH](O)[CH]7O)[CH](O)[CH]3O" KHL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CC#Cc5nc6c(ncnc6n5[C@H]7[C@@H]([C@@H]([C@H](O7)CNC(=O)NCCNC(=O)C4)O)O)N)O)O)N" KHL SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CC#Cc5nc6c(ncnc6n5C7C(C(C(O7)CNC(=O)NCCNC(=O)C4)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id KHL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},24~{R},25~{S},26~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-25,26-bis(oxidanyl)-27-oxa-2,4,6,9,14,17,20,22-octazatetracyclo[22.2.1.0^{2,10}.0^{3,8}]heptacosa-3(8),4,6,9-tetraen-11-yne-16,21-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KHL "Create component" 2022-05-25 PDBE KHL "Modify descriptor" 2022-08-22 RCSB KHL "Initial release" 2023-01-11 RCSB #