data_KHX # _chem_comp.id KHX _chem_comp.name "(1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-18,20-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H33 N13 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 679.644 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KHX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KHX N1 N1 N 0 1 Y N N 20.294 4.205 8.062 8.636 1.962 -0.216 N1 KHX 1 KHX C7 C1 C 0 1 N N N 14.346 9.554 10.756 0.198 0.164 1.195 C7 KHX 2 KHX C8 C2 C 0 1 N N N 13.172 8.846 12.762 1.250 -0.763 3.160 C8 KHX 3 KHX N2 N2 N 0 1 Y N N 19.699 6.329 9.032 6.432 2.643 -0.080 N2 KHX 4 KHX C9 C3 C 0 1 N N N 12.752 7.523 12.160 1.253 -2.153 2.541 C9 KHX 5 KHX O1 O1 O 0 1 N N N 14.051 6.062 10.170 1.791 -4.355 0.957 O1 KHX 6 KHX C1 C4 C 0 1 Y N N 20.531 5.320 8.759 7.710 2.903 -0.256 C1 KHX 7 KHX O5 O2 O 0 1 N N N 19.997 7.024 16.261 -1.412 0.232 -3.473 O5 KHX 8 KHX C5 C5 C 0 1 N N R 17.334 8.282 9.130 3.501 1.490 0.404 C5 KHX 9 KHX C6 C6 C 0 1 N N R 15.702 9.604 10.080 1.260 1.194 0.806 C6 KHX 10 KHX N3 N3 N 0 1 Y N N 17.402 6.956 8.536 4.799 0.811 0.365 N3 KHX 11 KHX C4 C7 C 0 1 Y N N 18.093 5.011 7.763 6.965 0.364 0.199 C4 KHX 12 KHX O4 O3 O 0 1 N N N 19.930 9.722 16.605 -3.234 1.803 -2.697 O4 KHX 13 KHX C3 C8 C 0 1 Y N N 16.416 6.302 7.838 5.016 -0.524 0.538 C3 KHX 14 KHX O3 O4 O 0 1 N N N 19.186 8.155 13.459 -3.919 -1.449 -1.655 O3 KHX 15 KHX C2 C9 C 0 1 Y N N 18.492 6.112 8.497 6.018 1.401 0.147 C2 KHX 16 KHX N4 N4 N 0 1 Y N N 16.776 5.141 7.356 6.287 -0.784 0.440 N4 KHX 17 KHX N N5 N 0 1 N N N 18.841 2.907 6.822 9.295 -0.288 0.044 N KHX 18 KHX C C10 C 0 1 Y N N 19.064 4.013 7.540 8.318 0.691 0.005 C KHX 19 KHX O O5 O 0 1 N N N 16.302 8.296 10.101 2.569 0.747 1.221 O KHX 20 KHX C10 C11 C 0 1 N N N 14.333 5.846 11.345 1.889 -3.242 0.505 C10 KHX 21 KHX C11 C12 C 0 1 N N N 15.347 4.785 11.719 1.720 -3.026 -0.982 C11 KHX 22 KHX C12 C13 C 0 1 N N N 16.251 5.216 12.856 0.280 -3.328 -1.313 C12 KHX 23 KHX C13 C14 C 0 1 N N N 17.035 7.252 13.972 -1.903 -2.757 -2.081 C13 KHX 24 KHX C14 C15 C 0 1 N N R 18.506 7.231 14.341 -2.738 -1.544 -2.469 C14 KHX 25 KHX C15 C16 C 0 1 N N R 19.871 9.119 14.237 -4.295 -0.068 -1.547 C15 KHX 26 KHX C16 C17 C 0 1 N N R 19.125 9.176 15.566 -3.019 0.774 -1.724 C16 KHX 27 KHX C17 C18 C 0 1 N N S 18.840 7.689 15.763 -1.966 -0.235 -2.239 C17 KHX 28 KHX C18 C19 C 0 1 Y N N 18.916 11.115 12.993 -4.401 0.124 0.988 C18 KHX 29 KHX C19 C20 C 0 1 Y N N 20.692 12.159 12.445 -6.400 0.937 1.248 C19 KHX 30 KHX C20 C21 C 0 1 Y N N 21.693 13.027 11.974 -7.640 1.454 1.666 C20 KHX 31 KHX C21 C22 C 0 1 Y N N 23.231 11.575 12.913 -8.341 1.479 -0.545 C21 KHX 32 KHX C22 C23 C 0 1 Y N N 21.105 11.034 13.135 -6.213 0.725 -0.128 C22 KHX 33 KHX C23 C24 C 0 1 N N N 17.564 10.703 13.132 -3.090 -0.387 1.272 C23 KHX 34 KHX C24 C25 C 0 1 N N N 16.378 10.581 13.098 -2.060 -0.543 1.865 C24 KHX 35 KHX C25 C26 C 0 1 N N N 14.914 10.502 12.963 -1.146 -0.632 3.022 C25 KHX 36 KHX C26 C27 C 0 1 N N S 15.691 9.967 8.604 1.353 1.316 -0.731 C26 KHX 37 KHX C27 C28 C 0 1 N N R 17.034 9.406 8.117 2.862 1.515 -1.002 C27 KHX 38 KHX N10 N6 N 0 1 N N N 21.448 14.153 11.298 -7.910 1.677 3.006 N10 KHX 39 KHX N11 N7 N 0 1 Y N N 22.978 12.697 12.234 -8.553 1.707 0.741 N11 KHX 40 KHX N12 N8 N 0 1 Y N N 22.369 10.682 13.402 -7.195 0.997 -0.980 N12 KHX 41 KHX N5 N9 N 0 1 N N N 14.433 9.350 12.207 0.121 0.068 2.675 N5 KHX 42 KHX N6 N10 N 0 1 N N N 13.774 6.505 12.357 2.071 -2.152 1.303 N6 KHX 43 KHX N7 N11 N 0 1 N N N 16.732 6.456 12.788 -0.469 -2.397 -1.980 N7 KHX 44 KHX N8 N12 N 0 1 Y N N 19.952 10.365 13.490 -4.934 0.238 -0.272 N8 KHX 45 KHX N9 N13 N 0 1 Y N N 19.305 12.210 12.359 -5.265 0.560 1.873 N9 KHX 46 KHX O2 O6 O 0 1 N N N 16.525 4.446 13.774 -0.215 -4.391 -0.986 O2 KHX 47 KHX O6 O7 O 0 1 N N N 15.603 11.374 8.412 0.607 2.444 -1.191 O6 KHX 48 KHX O7 O8 O 0 1 N N N 18.054 10.397 8.128 3.095 2.774 -1.636 O7 KHX 49 KHX H1 H1 H 0 1 N N N 13.825 10.504 10.567 -0.770 0.474 0.800 H1 KHX 50 KHX H2 H2 H 0 1 N N N 13.768 8.726 10.320 0.465 -0.808 0.781 H2 KHX 51 KHX H3 H3 H 0 1 N N N 12.382 9.587 12.568 1.149 -0.852 4.249 H3 KHX 52 KHX H4 H4 H 0 1 N N N 13.293 8.715 13.847 2.185 -0.246 2.936 H4 KHX 53 KHX H5 H5 H 0 1 N N N 12.583 7.657 11.081 1.708 -2.860 3.254 H5 KHX 54 KHX H6 H6 H 0 1 N N N 11.819 7.191 12.639 0.248 -2.500 2.313 H6 KHX 55 KHX H7 H7 H 0 1 N N N 21.531 5.419 9.155 8.013 3.923 -0.438 H7 KHX 56 KHX H8 H8 H 0 1 N N N 20.181 7.326 17.143 -0.823 0.993 -3.377 H8 KHX 57 KHX H9 H9 H 0 1 N N N 18.296 8.509 9.612 3.616 2.504 0.787 H9 KHX 58 KHX H10 H10 H 0 1 N N N 16.342 10.319 10.617 1.031 2.162 1.251 H10 KHX 59 KHX H11 H11 H 0 1 N N N 19.433 9.741 17.414 -2.483 2.402 -2.808 H11 KHX 60 KHX H12 H12 H 0 1 N N N 15.427 6.712 7.699 4.246 -1.257 0.729 H12 KHX 61 KHX H13 H13 H 0 1 N N N 19.677 2.360 6.783 9.050 -1.212 0.207 H13 KHX 62 KHX H14 H14 H 0 1 N N N 18.113 2.372 7.251 10.226 -0.049 -0.091 H14 KHX 63 KHX H15 H15 H 0 1 N N N 14.809 3.875 12.023 1.934 -1.982 -1.208 H15 KHX 64 KHX H16 H16 H 0 1 N N N 15.969 4.566 10.838 2.384 -3.679 -1.535 H16 KHX 65 KHX H17 H17 H 0 1 N N N 16.737 8.293 13.780 -2.250 -3.151 -1.122 H17 KHX 66 KHX H18 H18 H 0 1 N N N 16.456 6.855 14.819 -2.022 -3.537 -2.841 H18 KHX 67 KHX H19 H19 H 0 1 N N N 18.898 6.214 14.194 -3.033 -1.612 -3.529 H19 KHX 68 KHX H20 H20 H 0 1 N N N 20.892 8.762 14.439 -4.993 0.171 -2.358 H20 KHX 69 KHX H21 H21 H 0 1 N N N 18.182 9.730 15.448 -2.706 1.210 -0.777 H21 KHX 70 KHX H22 H22 H 0 1 N N N 17.971 7.550 16.423 -1.186 -0.366 -1.493 H22 KHX 71 KHX H23 H23 H 0 1 N N N 24.275 11.362 13.090 -9.130 1.686 -1.253 H23 KHX 72 KHX H24 H24 H 0 1 N N N 14.567 11.414 12.456 -1.590 -0.117 3.878 H24 KHX 73 KHX H25 H25 H 0 1 N N N 14.479 10.456 13.972 -0.942 -1.665 3.280 H25 KHX 74 KHX H26 H26 H 0 1 N N N 14.867 9.444 8.097 0.997 0.403 -1.209 H26 KHX 75 KHX H27 H27 H 0 1 N N N 16.911 8.973 7.114 3.250 0.702 -1.615 H27 KHX 76 KHX H28 H28 H 0 1 N N N 22.313 14.604 11.076 -8.775 2.023 3.275 H28 KHX 77 KHX H29 H29 H 0 1 N N N 20.960 13.935 10.453 -7.233 1.489 3.674 H29 KHX 78 KHX H31 H31 H 0 1 N N N 14.067 6.293 13.289 2.696 -1.442 1.070 H31 KHX 79 KHX H32 H32 H 0 1 N N N 16.892 6.859 11.887 -0.083 -1.597 -2.358 H32 KHX 80 KHX H33 H33 H 0 1 N N N 14.761 11.685 8.724 0.539 2.506 -2.153 H33 KHX 81 KHX H34 H34 H 0 1 N N N 18.869 10.017 7.822 2.714 2.845 -2.522 H34 KHX 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KHX N C SING N N 1 KHX N4 C4 SING Y N 2 KHX N4 C3 DOUB Y N 3 KHX C C4 DOUB Y N 4 KHX C N1 SING Y N 5 KHX C4 C2 SING Y N 6 KHX C3 N3 SING Y N 7 KHX N1 C1 DOUB Y N 8 KHX C27 O7 SING N N 9 KHX C27 C26 SING N N 10 KHX C27 C5 SING N N 11 KHX O6 C26 SING N N 12 KHX C2 N3 SING Y N 13 KHX C2 N2 DOUB Y N 14 KHX N3 C5 SING N N 15 KHX C26 C6 SING N N 16 KHX C1 N2 SING Y N 17 KHX C5 O SING N N 18 KHX C6 O SING N N 19 KHX C6 C7 SING N N 20 KHX O1 C10 DOUB N N 21 KHX C7 N5 SING N N 22 KHX N10 C20 SING N N 23 KHX C10 C11 SING N N 24 KHX C10 N6 SING N N 25 KHX C11 C12 SING N N 26 KHX C20 N11 DOUB Y N 27 KHX C20 C19 SING Y N 28 KHX C9 N6 SING N N 29 KHX C9 C8 SING N N 30 KHX N5 C8 SING N N 31 KHX N5 C25 SING N N 32 KHX N11 C21 SING Y N 33 KHX N9 C19 SING Y N 34 KHX N9 C18 DOUB Y N 35 KHX C19 C22 DOUB Y N 36 KHX N7 C12 SING N N 37 KHX N7 C13 SING N N 38 KHX C12 O2 DOUB N N 39 KHX C21 N12 DOUB Y N 40 KHX C25 C24 SING N N 41 KHX C18 C23 SING N N 42 KHX C18 N8 SING Y N 43 KHX C24 C23 TRIP N N 44 KHX C22 N12 SING Y N 45 KHX C22 N8 SING Y N 46 KHX O3 C15 SING N N 47 KHX O3 C14 SING N N 48 KHX N8 C15 SING N N 49 KHX C13 C14 SING N N 50 KHX C15 C16 SING N N 51 KHX C14 C17 SING N N 52 KHX C16 C17 SING N N 53 KHX C16 O4 SING N N 54 KHX C17 O5 SING N N 55 KHX C7 H1 SING N N 56 KHX C7 H2 SING N N 57 KHX C8 H3 SING N N 58 KHX C8 H4 SING N N 59 KHX C9 H5 SING N N 60 KHX C9 H6 SING N N 61 KHX C1 H7 SING N N 62 KHX O5 H8 SING N N 63 KHX C5 H9 SING N N 64 KHX C6 H10 SING N N 65 KHX O4 H11 SING N N 66 KHX C3 H12 SING N N 67 KHX N H13 SING N N 68 KHX N H14 SING N N 69 KHX C11 H15 SING N N 70 KHX C11 H16 SING N N 71 KHX C13 H17 SING N N 72 KHX C13 H18 SING N N 73 KHX C14 H19 SING N N 74 KHX C15 H20 SING N N 75 KHX C16 H21 SING N N 76 KHX C17 H22 SING N N 77 KHX C21 H23 SING N N 78 KHX C25 H24 SING N N 79 KHX C25 H25 SING N N 80 KHX C26 H26 SING N N 81 KHX C27 H27 SING N N 82 KHX N10 H28 SING N N 83 KHX N10 H29 SING N N 84 KHX N6 H31 SING N N 85 KHX N7 H32 SING N N 86 KHX O6 H33 SING N N 87 KHX O7 H34 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KHX InChI InChI 1.06 "InChI=1S/C28H33N13O8/c29-23-17-25(35-9-33-23)40(11-37-17)27-21(46)20(45)13(49-27)8-39-4-1-2-14-38-18-24(30)34-10-36-26(18)41(14)28-22(47)19(44)12(48-28)7-32-16(43)6-15(42)31-3-5-39/h9-13,19-22,27-28,44-47H,3-8H2,(H,31,42)(H,32,43)(H2,29,33,35)(H2,30,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" KHX InChIKey InChI 1.06 PMOGMPCPFUCJNQ-QJYUSYPVSA-N KHX SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CCNC(=O)CC(=O)NC[C@H]5O[C@H]([C@H](O)[C@@H]5O)n6c(nc7c(N)ncnc67)C#CC4)[C@@H](O)[C@H]3O" KHX SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CCNC(=O)CC(=O)NC[CH]5O[CH]([CH](O)[CH]5O)n6c(nc7c(N)ncnc67)C#CC4)[CH](O)[CH]3O" KHX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CCNC(=O)CC(=O)NC[C@@H]5[C@H]([C@H]([C@@H](O5)n6c(nc7c6ncnc7N)C#CC4)O)O)O)O)N" KHX SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CCNC(=O)CC(=O)NCC5C(C(C(O5)n6c(nc7c6ncnc7N)C#CC4)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id KHX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},23~{R},24~{S},25~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-24,25-bis(oxidanyl)-26-oxa-2,4,6,9,14,17,21-heptazatetracyclo[21.2.1.0^{2,10}.0^{3,8}]hexacosa-3(8),4,6,9-tetraen-11-yne-18,20-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KHX "Create component" 2022-05-25 PDBE KHX "Modify descriptor" 2022-08-22 RCSB KHX "Initial release" 2023-01-11 RCSB #