data_KIC # _chem_comp.id KIC _chem_comp.name "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H35 N13 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 697.659 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KIC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KIC N1 N1 N 0 1 N N N 16.317 6.923 12.559 3.279 3.561 -0.889 N1 KIC 1 KIC C7 C1 C 0 1 N N S 18.314 7.940 15.707 2.006 0.292 -2.386 C7 KIC 2 KIC C8 C2 C 0 1 Y N N 18.484 11.336 12.841 3.968 -1.667 0.770 C8 KIC 3 KIC N2 N2 N 0 1 Y N N 19.486 10.549 13.380 4.512 -1.561 -0.486 N2 KIC 4 KIC C9 C3 C 0 1 Y N N 20.316 12.302 12.327 5.558 -3.147 0.668 C9 KIC 5 KIC O1 O1 O 0 1 N N N 18.777 8.293 13.409 3.872 0.690 -0.982 O1 KIC 6 KIC C1 C4 C 0 1 N N N 15.959 5.244 10.872 3.876 5.742 0.113 C1 KIC 7 KIC O5 O2 O 0 1 N N N 17.760 10.323 7.881 -5.357 2.638 -0.643 O5 KIC 8 KIC C5 C5 C 0 1 N N R 19.369 9.330 14.172 4.095 -0.629 -1.537 C5 KIC 9 KIC C6 C6 C 0 1 N N R 18.548 9.424 15.455 2.726 -1.048 -2.118 C6 KIC 10 KIC N3 N3 N 0 1 Y N N 18.935 12.409 12.209 4.594 -2.603 1.443 N3 KIC 11 KIC C4 C7 C 0 1 N N R 18.026 7.425 14.297 3.022 1.365 -1.934 C4 KIC 12 KIC O4 O3 O 0 1 N N N 15.829 8.420 9.901 -3.113 0.140 0.484 O4 KIC 13 KIC C3 C8 C 0 1 N N N 16.566 7.473 13.885 2.301 2.538 -1.267 C3 KIC 14 KIC O3 O4 O 0 1 N N N 19.505 7.346 16.204 1.714 0.435 -3.778 O3 KIC 15 KIC C2 C9 C 0 1 N N N 16.223 5.617 12.312 2.870 4.690 -0.276 C2 KIC 16 KIC N4 N4 N 0 1 N N N 21.186 14.214 11.114 6.601 -4.845 2.051 N4 KIC 17 KIC N N5 N 0 1 N N N 14.510 3.317 11.219 4.137 7.938 1.166 N KIC 18 KIC C C10 C 0 1 N N N 15.808 3.729 10.678 3.156 6.912 0.786 C KIC 19 KIC O O5 O 0 1 N N N 16.349 4.759 13.183 1.693 4.859 -0.039 O KIC 20 KIC C10 C11 C 0 1 Y N N 21.367 13.098 11.830 6.515 -4.162 0.851 C10 KIC 21 KIC C11 C12 C 0 1 Y N N 22.821 11.577 12.789 7.258 -3.803 -1.305 C11 KIC 22 KIC C12 C13 C 0 1 Y N N 20.672 11.166 13.040 5.519 -2.489 -0.575 C12 KIC 23 KIC C13 C14 C 0 1 N N N 17.120 10.979 12.923 2.886 -0.873 1.271 C13 KIC 24 KIC C14 C15 C 0 1 N N N 15.938 10.814 12.920 1.999 -0.223 1.681 C14 KIC 25 KIC C15 C16 C 0 1 N N N 14.505 10.484 12.970 0.888 0.593 2.196 C15 KIC 26 KIC C16 C17 C 0 1 N N N 14.012 9.847 10.624 -1.374 1.320 1.727 C16 KIC 27 KIC C17 C18 C 0 1 N N R 15.359 9.780 9.923 -2.401 1.392 0.596 C17 KIC 28 KIC C18 C19 C 0 1 N N R 16.862 8.358 8.933 -4.334 0.458 -0.219 C18 KIC 29 KIC C19 C20 C 0 1 N N R 16.613 9.477 7.912 -4.791 1.809 0.375 C19 KIC 30 KIC C20 C21 C 0 1 N N S 15.357 10.179 8.454 -3.490 2.437 0.923 C20 KIC 31 KIC C21 C22 C 0 1 Y N N 15.887 6.367 7.683 -5.395 -1.422 1.087 C21 KIC 32 KIC C22 C23 C 0 1 Y N N 17.552 5.050 7.650 -7.095 -1.925 -0.162 C22 KIC 33 KIC C23 C24 C 0 1 Y N N 17.965 6.176 8.339 -6.415 -0.867 -0.788 C23 KIC 34 KIC C24 C25 C 0 1 Y N N 20.003 5.383 8.599 -7.969 -0.891 -2.480 C24 KIC 35 KIC C25 C26 C 0 1 Y N N 18.514 4.041 7.448 -8.248 -2.432 -0.784 C25 KIC 36 KIC C26 C27 C 0 1 N N N 12.950 8.676 12.537 -0.761 -1.002 1.423 C26 KIC 37 KIC C27 C28 C 0 1 N N N 11.610 9.359 12.691 -1.250 -1.301 2.817 C27 KIC 38 KIC N10 N6 N 0 1 Y N N 19.177 6.399 8.853 -6.883 -0.386 -1.934 N10 KIC 39 KIC N11 N7 N 0 1 Y N N 19.754 4.247 7.945 -8.641 -1.887 -1.931 N11 KIC 40 KIC N12 N8 N 0 1 N N N 18.281 2.917 6.765 -8.959 -3.474 -0.216 N12 KIC 41 KIC N5 N9 N 0 1 Y N N 22.630 12.697 12.086 7.333 -4.450 -0.156 N5 KIC 42 KIC N6 N10 N 0 1 Y N N 21.911 10.748 13.307 6.380 -2.847 -1.522 N6 KIC 43 KIC N7 N11 N 0 1 N N N 14.098 9.436 12.035 -0.299 0.390 1.355 N7 KIC 44 KIC N8 N12 N 0 1 Y N N 16.887 7.025 8.351 -5.345 -0.575 0.020 N8 KIC 45 KIC N9 N13 N 0 1 Y N N 16.230 5.178 7.249 -6.423 -2.213 0.978 N9 KIC 46 KIC O2 O6 O 0 1 N N N 19.288 10.022 16.511 2.901 -1.775 -3.336 O2 KIC 47 KIC O6 O7 O 0 1 N N N 15.479 11.583 8.291 -3.213 3.673 0.261 O6 KIC 48 KIC O7 O8 O 0 1 N N N 11.600 10.665 12.552 -1.157 -0.464 3.683 O7 KIC 49 KIC O8 O9 O 0 1 N N N 10.611 8.714 12.937 -1.789 -2.499 3.097 O8 KIC 50 KIC H1 H1 H 0 1 N N N 16.211 7.559 11.794 4.221 3.424 -1.075 H1 KIC 51 KIC H2 H2 H 0 1 N N N 17.451 7.781 16.370 1.092 0.359 -1.797 H2 KIC 52 KIC H3 H3 H 0 1 N N N 16.799 5.597 10.256 4.600 5.314 0.806 H3 KIC 53 KIC H4 H4 H 0 1 N N N 15.032 5.736 10.544 4.393 6.098 -0.778 H4 KIC 54 KIC H5 H5 H 0 1 N N N 18.502 9.839 7.539 -5.606 3.521 -0.338 H5 KIC 55 KIC H6 H6 H 0 1 N N N 20.383 9.015 14.460 4.846 -0.586 -2.326 H6 KIC 56 KIC H7 H7 H 0 1 N N N 17.595 9.942 15.269 2.170 -1.643 -1.394 H7 KIC 57 KIC H8 H8 H 0 1 N N N 18.391 6.391 14.212 3.607 1.713 -2.786 H8 KIC 58 KIC H9 H9 H 0 1 N N N 16.236 8.522 13.894 1.780 2.186 -0.377 H9 KIC 59 KIC H10 H10 H 0 1 N N N 15.979 6.898 14.616 1.580 2.965 -1.964 H10 KIC 60 KIC H11 H11 H 0 1 N N N 19.679 7.670 17.080 1.103 -0.232 -4.122 H11 KIC 61 KIC H12 H12 H 0 1 N N N 22.075 14.599 10.866 7.265 -5.543 2.165 H12 KIC 62 KIC H13 H13 H 0 1 N N N 20.673 13.997 10.283 5.998 -4.626 2.778 H13 KIC 63 KIC H14 H14 H 0 1 N N N 14.397 2.331 11.100 3.685 8.722 1.613 H14 KIC 64 KIC H15 H15 H 0 1 N N N 14.468 3.542 12.192 4.856 7.549 1.757 H15 KIC 65 KIC H17 H17 H 0 1 N N N 15.857 3.486 9.606 2.432 7.340 0.093 H17 KIC 66 KIC H18 H18 H 0 1 N N N 16.615 3.205 11.211 2.639 6.556 1.677 H18 KIC 67 KIC H19 H19 H 0 1 N N N 23.852 11.305 12.962 7.944 -4.069 -2.096 H19 KIC 68 KIC H20 H20 H 0 1 N N N 13.933 11.394 12.738 0.662 0.296 3.220 H20 KIC 69 KIC H21 H21 H 0 1 N N N 14.264 10.149 13.990 1.170 1.646 2.178 H21 KIC 70 KIC H22 H22 H 0 1 N N N 13.640 10.881 10.578 -0.953 2.311 1.899 H22 KIC 71 KIC H23 H23 H 0 1 N N N 13.308 9.181 10.103 -1.859 0.969 2.637 H23 KIC 72 KIC H24 H24 H 0 1 N N N 16.074 10.417 10.464 -1.911 1.635 -0.347 H24 KIC 73 KIC H25 H25 H 0 1 N N N 17.830 8.553 9.418 -4.141 0.559 -1.288 H25 KIC 74 KIC H26 H26 H 0 1 N N N 16.403 9.043 6.923 -5.508 1.652 1.180 H26 KIC 75 KIC H27 H27 H 0 1 N N N 14.460 9.786 7.954 -3.563 2.588 2.000 H27 KIC 76 KIC H28 H28 H 0 1 N N N 14.905 6.790 7.528 -4.685 -1.437 1.901 H28 KIC 77 KIC H29 H29 H 0 1 N N N 21.010 5.495 8.973 -8.324 -0.477 -3.412 H29 KIC 78 KIC H30 H30 H 0 1 N N N 12.800 7.831 11.848 0.063 -1.671 1.176 H30 KIC 79 KIC H31 H31 H 0 1 N N N 13.230 8.294 13.530 -1.575 -1.151 0.714 H31 KIC 80 KIC H32 H32 H 0 1 N N N 19.117 2.370 6.727 -8.663 -3.864 0.622 H32 KIC 81 KIC H33 H33 H 0 1 N N N 17.561 2.394 7.220 -9.755 -3.815 -0.654 H33 KIC 82 KIC H35 H35 H 0 1 N N N 18.749 10.065 17.292 2.073 -2.062 -3.745 H35 KIC 83 KIC H36 H36 H 0 1 N N N 14.700 12.010 8.628 -3.896 4.347 0.384 H36 KIC 84 KIC H37 H37 H 0 1 N N N 9.865 9.298 13.006 -2.088 -2.644 4.005 H37 KIC 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KIC N12 C25 SING N N 1 KIC N9 C22 SING Y N 2 KIC N9 C21 DOUB Y N 3 KIC C25 C22 DOUB Y N 4 KIC C25 N11 SING Y N 5 KIC C22 C23 SING Y N 6 KIC C21 N8 SING Y N 7 KIC O5 C19 SING N N 8 KIC C19 C20 SING N N 9 KIC C19 C18 SING N N 10 KIC N11 C24 DOUB Y N 11 KIC O6 C20 SING N N 12 KIC C23 N8 SING Y N 13 KIC C23 N10 DOUB Y N 14 KIC N8 C18 SING N N 15 KIC C20 C17 SING N N 16 KIC C24 N10 SING Y N 17 KIC C18 O4 SING N N 18 KIC O4 C17 SING N N 19 KIC C17 C16 SING N N 20 KIC C16 N7 SING N N 21 KIC C C1 SING N N 22 KIC C N SING N N 23 KIC C1 C2 SING N N 24 KIC N4 C10 SING N N 25 KIC C10 N5 DOUB Y N 26 KIC C10 C9 SING Y N 27 KIC N7 C26 SING N N 28 KIC N7 C15 SING N N 29 KIC N5 C11 SING Y N 30 KIC N3 C9 SING Y N 31 KIC N3 C8 DOUB Y N 32 KIC C2 N1 SING N N 33 KIC C2 O DOUB N N 34 KIC C9 C12 DOUB Y N 35 KIC C26 C27 SING N N 36 KIC O7 C27 DOUB N N 37 KIC N1 C3 SING N N 38 KIC C27 O8 SING N N 39 KIC C11 N6 DOUB Y N 40 KIC C8 C13 SING N N 41 KIC C8 N2 SING Y N 42 KIC C14 C13 TRIP N N 43 KIC C14 C15 SING N N 44 KIC C12 N6 SING Y N 45 KIC C12 N2 SING Y N 46 KIC N2 C5 SING N N 47 KIC O1 C5 SING N N 48 KIC O1 C4 SING N N 49 KIC C3 C4 SING N N 50 KIC C5 C6 SING N N 51 KIC C4 C7 SING N N 52 KIC C6 C7 SING N N 53 KIC C6 O2 SING N N 54 KIC C7 O3 SING N N 55 KIC N1 H1 SING N N 56 KIC C7 H2 SING N N 57 KIC C1 H3 SING N N 58 KIC C1 H4 SING N N 59 KIC O5 H5 SING N N 60 KIC C5 H6 SING N N 61 KIC C6 H7 SING N N 62 KIC C4 H8 SING N N 63 KIC C3 H9 SING N N 64 KIC C3 H10 SING N N 65 KIC O3 H11 SING N N 66 KIC N4 H12 SING N N 67 KIC N4 H13 SING N N 68 KIC N H14 SING N N 69 KIC N H15 SING N N 70 KIC C H17 SING N N 71 KIC C H18 SING N N 72 KIC C11 H19 SING N N 73 KIC C15 H20 SING N N 74 KIC C15 H21 SING N N 75 KIC C16 H22 SING N N 76 KIC C16 H23 SING N N 77 KIC C17 H24 SING N N 78 KIC C18 H25 SING N N 79 KIC C19 H26 SING N N 80 KIC C20 H27 SING N N 81 KIC C21 H28 SING N N 82 KIC C24 H29 SING N N 83 KIC C26 H30 SING N N 84 KIC C26 H31 SING N N 85 KIC N12 H32 SING N N 86 KIC N12 H33 SING N N 87 KIC O2 H35 SING N N 88 KIC O6 H36 SING N N 89 KIC O8 H37 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KIC InChI InChI 1.06 "InChI=1S/C28H35N13O9/c29-4-3-15(42)32-6-12-19(45)22(48)28(49-12)41-14(38-18-24(31)34-10-36-26(18)41)2-1-5-39(8-16(43)44)7-13-20(46)21(47)27(50-13)40-11-37-17-23(30)33-9-35-25(17)40/h9-13,19-22,27-28,45-48H,3-8,29H2,(H,32,42)(H,43,44)(H2,30,33,35)(H2,31,34,36)/t12-,13-,19-,20-,21-,22-,27-,28-/m1/s1" KIC InChIKey InChI 1.06 MESAVOLQOCRHDN-QJYUSYPVSA-N KIC SMILES_CANONICAL CACTVS 3.385 "NCCC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O" KIC SMILES CACTVS 3.385 "NCCC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O" KIC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CCN)O)O)N)CC(=O)O)O)O)N" KIC SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CCN)O)O)N)CC(=O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id KIC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KIC "Create component" 2022-05-25 PDBE KIC "Modify descriptor" 2022-08-22 RCSB KIC "Initial release" 2023-01-11 RCSB #