data_KJ0 # _chem_comp.id KJ0 _chem_comp.name "N-[(2S)-3-cyclohexyl-1-[[(2S,3S)-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-benzofuran-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H40 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-22 _chem_comp.pdbx_modified_date 2023-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 552.662 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KJ0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KJ0 C10 C1 C 0 1 N N N -11.410 -17.947 16.277 -2.630 -3.826 -2.372 C10 KJ0 1 KJ0 C15 C2 C 0 1 Y N N -15.865 -18.639 22.238 -5.892 2.074 1.059 C15 KJ0 2 KJ0 C17 C3 C 0 1 Y N N -16.023 -18.218 24.632 -7.651 3.686 0.925 C17 KJ0 3 KJ0 C20 C4 C 0 1 Y N N -17.110 -19.245 22.243 -5.346 2.558 -0.145 C20 KJ0 4 KJ0 C24 C5 C 0 1 N N S -15.769 -23.326 15.229 2.826 -0.131 -0.484 C24 KJ0 5 KJ0 C14 C6 C 0 1 Y N N -15.442 -18.710 20.862 -5.009 0.989 1.486 C14 KJ0 6 KJ0 C18 C7 C 0 1 Y N N -17.286 -18.833 24.644 -7.116 4.167 -0.263 C18 KJ0 7 KJ0 C19 C8 C 0 1 Y N N -17.834 -19.348 23.464 -5.974 3.612 -0.798 C19 KJ0 8 KJ0 C25 C9 C 0 1 N N N -17.259 -23.515 14.871 3.873 -0.739 0.451 C25 KJ0 9 KJ0 C2 C10 C 0 1 N N N -15.039 -21.359 16.582 0.398 -0.274 -0.642 C2 KJ0 10 KJ0 C3 C11 C 0 1 N N S -14.786 -19.856 16.696 -0.899 -1.005 -0.409 C3 KJ0 11 KJ0 C4 C12 C 0 1 N N N -13.321 -19.582 16.332 -1.103 -2.045 -1.512 C4 KJ0 12 KJ0 C5 C13 C 0 1 N N N -12.861 -18.144 16.761 -2.355 -2.871 -1.209 C5 KJ0 13 KJ0 C6 C14 C 0 1 N N N -13.813 -17.110 16.138 -2.135 -3.678 0.072 C6 KJ0 14 KJ0 C7 C15 C 0 1 N N N -13.325 -15.677 16.417 -3.387 -4.504 0.375 C7 KJ0 15 KJ0 C8 C16 C 0 1 N N N -11.879 -15.469 15.930 -3.662 -5.459 -0.788 C8 KJ0 16 KJ0 C9 C17 C 0 1 N N N -10.917 -16.511 16.520 -3.882 -4.652 -2.069 C9 KJ0 17 KJ0 C12 C18 C 0 1 N N N -16.353 -19.629 18.632 -2.921 -0.055 0.564 C12 KJ0 18 KJ0 C13 C19 C 0 1 Y N N -16.458 -19.339 20.139 -4.034 0.904 0.545 C13 KJ0 19 KJ0 C16 C20 C 0 1 Y N N -15.305 -18.115 23.435 -7.051 2.651 1.584 C16 KJ0 20 KJ0 C26 C21 C 0 1 N N S -18.245 -22.841 15.935 3.405 -0.600 1.901 C26 KJ0 21 KJ0 C27 C22 C 0 1 N N N -18.126 -23.519 17.191 3.349 0.882 2.277 C27 KJ0 22 KJ0 C28 C23 C 0 1 N N N -18.987 -24.689 17.310 3.150 0.990 3.794 C28 KJ0 23 KJ0 C29 C24 C 0 1 N N N -20.423 -24.313 17.307 4.410 0.478 4.491 C29 KJ0 24 KJ0 C31 C25 C 0 1 N N N -19.717 -22.783 15.333 4.363 -1.322 2.805 C31 KJ0 25 KJ0 C33 C26 C 0 1 N N S -14.874 -23.889 14.130 3.326 -0.206 -1.928 C33 KJ0 26 KJ0 C35 C27 C 0 1 N N N -15.208 -25.388 13.963 4.536 0.679 -2.087 C35 KJ0 27 KJ0 C37 C28 C 0 1 N N N -16.374 -27.162 12.536 5.562 2.881 -2.270 C37 KJ0 28 KJ0 C38 C29 C 0 1 N N N -17.691 -27.608 13.169 5.289 4.325 -2.695 C38 KJ0 29 KJ0 C39 C30 C 0 1 N N N -17.622 -27.325 11.664 5.814 4.027 -1.289 C39 KJ0 30 KJ0 N11 N1 N 0 1 N N N -14.998 -19.567 18.083 -2.008 -0.049 -0.428 N11 KJ0 31 KJ0 N23 N2 N 0 1 N N N -15.532 -21.904 15.306 1.571 -0.877 -0.363 N23 KJ0 32 KJ0 N30 N3 N 0 1 N N N -20.843 -23.550 16.052 4.785 -0.831 3.971 N30 KJ0 33 KJ0 N36 N4 N 0 1 N N N -15.995 -25.767 12.785 4.405 2.018 -2.020 N36 KJ0 34 KJ0 O1 O1 O 0 1 N N N -14.862 -22.083 17.509 0.387 0.857 -1.080 O1 KJ0 35 KJ0 O21 O2 O 0 1 Y N N -17.444 -19.665 20.971 -4.245 1.830 -0.415 O21 KJ0 36 KJ0 O22 O3 O 0 1 N N N -17.290 -19.903 17.956 -2.823 -0.856 1.474 O22 KJ0 37 KJ0 O32 O4 O 0 1 N N N -19.941 -22.158 14.353 4.774 -2.408 2.457 O32 KJ0 38 KJ0 O34 O5 O 0 1 N N N -15.054 -23.168 12.932 3.677 -1.555 -2.241 O34 KJ0 39 KJ0 O40 O6 O 0 1 N N N -14.886 -26.204 14.774 5.627 0.185 -2.275 O40 KJ0 40 KJ0 H1 H1 H 0 1 N N N -11.362 -18.162 15.199 -2.786 -3.251 -3.285 H1 KJ0 41 KJ0 H2 H2 H 0 1 N N N -10.756 -18.645 16.820 -1.778 -4.493 -2.504 H2 KJ0 42 KJ0 H3 H3 H 0 1 N N N -15.606 -17.824 25.547 -8.547 4.133 1.330 H3 KJ0 43 KJ0 H4 H4 H 0 1 N N N -15.549 -23.820 16.187 2.657 0.911 -0.211 H4 KJ0 44 KJ0 H5 H5 H 0 1 N N N -14.508 -18.343 20.462 -5.111 0.380 2.372 H5 KJ0 45 KJ0 H6 H6 H 0 1 N N N -17.837 -18.909 25.570 -7.602 4.986 -0.773 H6 KJ0 46 KJ0 H7 H7 H 0 1 N N N -18.804 -19.823 23.480 -5.568 3.996 -1.722 H7 KJ0 47 KJ0 H8 H8 H 0 1 N N N -17.443 -23.062 13.886 4.005 -1.794 0.211 H8 KJ0 48 KJ0 H9 H9 H 0 1 N N N -17.475 -24.593 14.826 4.821 -0.216 0.323 H9 KJ0 49 KJ0 H10 H10 H 0 1 N N N -15.465 -19.291 16.040 -0.866 -1.504 0.559 H10 KJ0 50 KJ0 H11 H11 H 0 1 N N N -12.686 -20.323 16.839 -1.225 -1.540 -2.470 H11 KJ0 51 KJ0 H12 H12 H 0 1 N N N -13.202 -19.681 15.243 -0.235 -2.703 -1.556 H12 KJ0 52 KJ0 H13 H13 H 0 1 N N N -12.897 -18.065 17.858 -3.207 -2.204 -1.077 H13 KJ0 53 KJ0 H14 H14 H 0 1 N N N -14.817 -17.239 16.569 -1.283 -4.345 -0.060 H14 KJ0 54 KJ0 H15 H15 H 0 1 N N N -13.857 -17.270 15.051 -1.939 -2.998 0.901 H15 KJ0 55 KJ0 H16 H16 H 0 1 N N N -13.368 -15.489 17.500 -3.231 -5.079 1.288 H16 KJ0 56 KJ0 H17 H17 H 0 1 N N N -13.984 -14.967 15.895 -4.239 -3.837 0.507 H17 KJ0 57 KJ0 H18 H18 H 0 1 N N N -11.859 -15.548 14.833 -2.810 -6.126 -0.920 H18 KJ0 58 KJ0 H19 H19 H 0 1 N N N -11.544 -14.466 16.231 -4.554 -6.047 -0.572 H19 KJ0 59 KJ0 H20 H20 H 0 1 N N N -9.930 -16.390 16.051 -4.734 -3.985 -1.937 H20 KJ0 60 KJ0 H21 H21 H 0 1 N N N -10.831 -16.343 17.604 -4.078 -5.332 -2.898 H21 KJ0 61 KJ0 H22 H22 H 0 1 N N N -14.334 -17.642 23.421 -7.471 2.280 2.507 H22 KJ0 62 KJ0 H23 H23 H 0 1 N N N -17.911 -21.800 16.061 2.412 -1.038 2.004 H23 KJ0 63 KJ0 H24 H24 H 0 1 N N N -17.082 -23.843 17.313 4.283 1.368 1.995 H24 KJ0 64 KJ0 H25 H25 H 0 1 N N N -18.387 -22.813 17.993 2.516 1.360 1.763 H25 KJ0 65 KJ0 H26 H26 H 0 1 N N N -18.793 -25.363 16.463 2.978 2.031 4.067 H26 KJ0 66 KJ0 H27 H27 H 0 1 N N N -18.756 -25.208 18.252 2.293 0.387 4.094 H27 KJ0 67 KJ0 H28 H28 H 0 1 N N N -20.620 -23.679 18.184 5.227 1.180 4.321 H28 KJ0 68 KJ0 H29 H29 H 0 1 N N N -21.025 -25.231 17.376 4.222 0.396 5.562 H29 KJ0 69 KJ0 H30 H30 H 0 1 N N N -13.828 -23.808 14.461 2.539 0.131 -2.603 H30 KJ0 70 KJ0 H31 H31 H 0 1 N N N -15.580 -27.916 12.431 6.433 2.386 -2.701 H31 KJ0 71 KJ0 H32 H32 H 0 1 N N N -18.241 -26.925 13.832 5.980 4.781 -3.404 H32 KJ0 72 KJ0 H33 H33 H 0 1 N N N -17.806 -28.641 13.530 4.247 4.634 -2.788 H33 KJ0 73 KJ0 H34 H34 H 0 1 N N N -18.122 -26.438 11.247 5.118 4.140 -0.457 H34 KJ0 74 KJ0 H35 H35 H 0 1 N N N -17.686 -28.154 10.944 6.851 4.287 -1.073 H35 KJ0 75 KJ0 H36 H36 H 0 1 N N N -14.226 -19.325 18.671 -2.086 0.590 -1.154 H36 KJ0 76 KJ0 H37 H37 H 0 1 N N N -15.697 -21.309 14.519 1.584 -1.806 -0.081 H37 KJ0 77 KJ0 H38 H38 H 0 1 N N N -21.786 -23.549 15.719 5.379 -1.380 4.507 H38 KJ0 78 KJ0 H39 H39 H 0 1 N N N -16.279 -25.060 12.138 3.544 2.412 -1.807 H39 KJ0 79 KJ0 H40 H40 H 0 1 N N N -14.839 -22.254 13.077 4.374 -1.920 -1.679 H40 KJ0 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KJ0 C39 C37 SING N N 1 KJ0 C39 C38 SING N N 2 KJ0 C37 N36 SING N N 3 KJ0 C37 C38 SING N N 4 KJ0 N36 C35 SING N N 5 KJ0 O34 C33 SING N N 6 KJ0 C35 C33 SING N N 7 KJ0 C35 O40 DOUB N N 8 KJ0 C33 C24 SING N N 9 KJ0 O32 C31 DOUB N N 10 KJ0 C25 C24 SING N N 11 KJ0 C25 C26 SING N N 12 KJ0 C24 N23 SING N N 13 KJ0 N23 C2 SING N N 14 KJ0 C31 C26 SING N N 15 KJ0 C31 N30 SING N N 16 KJ0 C8 C7 SING N N 17 KJ0 C8 C9 SING N N 18 KJ0 C26 C27 SING N N 19 KJ0 N30 C29 SING N N 20 KJ0 C6 C7 SING N N 21 KJ0 C6 C5 SING N N 22 KJ0 C10 C9 SING N N 23 KJ0 C10 C5 SING N N 24 KJ0 C4 C3 SING N N 25 KJ0 C4 C5 SING N N 26 KJ0 C2 C3 SING N N 27 KJ0 C2 O1 DOUB N N 28 KJ0 C3 N11 SING N N 29 KJ0 C27 C28 SING N N 30 KJ0 C29 C28 SING N N 31 KJ0 O22 C12 DOUB N N 32 KJ0 N11 C12 SING N N 33 KJ0 C12 C13 SING N N 34 KJ0 C13 C14 DOUB Y N 35 KJ0 C13 O21 SING Y N 36 KJ0 C14 C15 SING Y N 37 KJ0 O21 C20 SING Y N 38 KJ0 C15 C20 DOUB Y N 39 KJ0 C15 C16 SING Y N 40 KJ0 C20 C19 SING Y N 41 KJ0 C16 C17 DOUB Y N 42 KJ0 C19 C18 DOUB Y N 43 KJ0 C17 C18 SING Y N 44 KJ0 C10 H1 SING N N 45 KJ0 C10 H2 SING N N 46 KJ0 C17 H3 SING N N 47 KJ0 C24 H4 SING N N 48 KJ0 C14 H5 SING N N 49 KJ0 C18 H6 SING N N 50 KJ0 C19 H7 SING N N 51 KJ0 C25 H8 SING N N 52 KJ0 C25 H9 SING N N 53 KJ0 C3 H10 SING N N 54 KJ0 C4 H11 SING N N 55 KJ0 C4 H12 SING N N 56 KJ0 C5 H13 SING N N 57 KJ0 C6 H14 SING N N 58 KJ0 C6 H15 SING N N 59 KJ0 C7 H16 SING N N 60 KJ0 C7 H17 SING N N 61 KJ0 C8 H18 SING N N 62 KJ0 C8 H19 SING N N 63 KJ0 C9 H20 SING N N 64 KJ0 C9 H21 SING N N 65 KJ0 C16 H22 SING N N 66 KJ0 C26 H23 SING N N 67 KJ0 C27 H24 SING N N 68 KJ0 C27 H25 SING N N 69 KJ0 C28 H26 SING N N 70 KJ0 C28 H27 SING N N 71 KJ0 C29 H28 SING N N 72 KJ0 C29 H29 SING N N 73 KJ0 C33 H30 SING N N 74 KJ0 C37 H31 SING N N 75 KJ0 C38 H32 SING N N 76 KJ0 C38 H33 SING N N 77 KJ0 C39 H34 SING N N 78 KJ0 C39 H35 SING N N 79 KJ0 N11 H36 SING N N 80 KJ0 N23 H37 SING N N 81 KJ0 N30 H38 SING N N 82 KJ0 N36 H39 SING N N 83 KJ0 O34 H40 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KJ0 InChI InChI 1.06 "InChI=1S/C30H40N4O6/c35-26(30(39)32-21-12-13-21)22(16-20-10-6-14-31-27(20)36)33-28(37)23(15-18-7-2-1-3-8-18)34-29(38)25-17-19-9-4-5-11-24(19)40-25/h4-5,9,11,17-18,20-23,26,35H,1-3,6-8,10,12-16H2,(H,31,36)(H,32,39)(H,33,37)(H,34,38)/t20-,22-,23-,26-/m0/s1" KJ0 InChIKey InChI 1.06 FLHCDUBGBDAQOK-SZBRSHHCSA-N KJ0 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]([C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NC5CC5" KJ0 SMILES CACTVS 3.385 "O[CH]([CH](C[CH]1CCCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NC5CC5" KJ0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C(=O)N[C@@H](CC3CCCCC3)C(=O)N[C@@H](C[C@@H]4CCCNC4=O)[C@@H](C(=O)NC5CC5)O" KJ0 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C(=O)NC(CC3CCCCC3)C(=O)NC(CC4CCCNC4=O)C(C(=O)NC5CC5)O" # _pdbx_chem_comp_identifier.comp_id KJ0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-3-cyclohexyl-1-[[(2~{S},3~{S})-4-(cyclopropylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-1-benzofuran-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KJ0 "Create component" 2022-09-22 PDBJ KJ0 "Initial release" 2023-09-20 RCSB #