data_KKO # _chem_comp.id KKO _chem_comp.name "(2~{S})-1-(3,4-dichlorophenyl)-4-(4-methoxypyridin-3-yl)carbonyl-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 Cl2 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-15 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KKO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KKO N3 N1 N 0 1 N N N N N N -12.704 13.435 10.012 -0.300 1.721 0.425 N3 KKO 1 KKO C4 C1 C 0 1 N N N N N N -13.154 14.712 9.502 0.076 3.094 0.769 C4 KKO 2 KKO C5 C2 C 0 1 Y N N N N N -12.689 15.796 10.423 -1.051 4.029 0.413 C5 KKO 3 KKO C6 C3 C 0 1 Y N N N N N -13.113 16.077 11.714 -2.051 4.372 1.226 C6 KKO 4 KKO C7 C4 C 0 1 Y N N N N N -12.404 17.177 12.279 -2.974 5.247 0.678 C7 KKO 5 KKO C8 C5 C 0 1 Y N N N N N -11.492 17.685 11.431 -2.723 5.614 -0.579 C8 KKO 6 KKO C10 C6 C 0 1 N N S N N N -11.120 11.682 10.548 0.167 -0.706 0.314 C10 KKO 7 KKO N12 N2 N 0 1 N N N N N N -11.110 9.266 10.268 -1.365 -2.523 0.858 N12 KKO 8 KKO C13 C7 C 0 1 N N N N N N -12.019 9.080 11.397 -0.271 -3.485 1.057 C13 KKO 9 KKO C17 C8 C 0 1 Y N N N N N -10.670 13.396 12.807 3.582 -0.990 0.901 C17 KKO 10 KKO C20 C9 C 0 1 Y N N N N N -11.789 14.758 14.445 4.856 -0.363 -1.030 C20 KKO 11 KKO C21 C10 C 0 1 Y N N N N N -12.902 13.945 14.363 3.748 -0.571 -1.833 C21 KKO 12 KKO C22 C11 C 0 1 Y N N N N N -12.909 12.861 13.505 2.553 -0.978 -1.272 C22 KKO 13 KKO C24 C12 C 0 1 N N N N N N -10.112 8.395 10.011 -2.586 -2.935 0.465 C24 KKO 14 KKO C26 C13 C 0 1 Y N N N N N -8.001 8.894 8.756 -4.030 -1.184 1.500 C26 KKO 15 KKO C28 C14 C 0 1 Y N N N N N -7.737 8.529 6.519 -5.757 -0.176 0.348 C28 KKO 16 KKO C11 C15 C 0 1 N N N N N N -11.438 10.520 9.602 -1.090 -1.098 1.097 C11 KKO 17 KKO C14 C16 C 0 1 N N N N N N -11.783 10.163 12.423 0.954 -2.999 0.275 C14 KKO 18 KKO C16 C17 C 0 1 Y N N N N N -11.798 12.575 12.717 2.468 -1.194 0.098 C16 KKO 19 KKO C18 C18 C 0 1 Y N N N N N -10.674 14.480 13.665 4.773 -0.572 0.336 C18 KKO 20 KKO C2 C19 C 0 1 N N N N N N -11.430 13.042 9.927 0.557 0.708 0.662 C2 KKO 21 KKO C25 C20 C 0 1 Y N N N N N -9.345 8.525 8.724 -3.703 -1.973 0.397 C25 KKO 22 KKO C29 C21 C 0 1 Y N N N N N -9.055 8.148 6.363 -5.500 -0.911 -0.790 C29 KKO 23 KKO C30 C22 C 0 1 Y N N N N N -9.867 8.153 7.485 -4.458 -1.834 -0.782 C30 KKO 24 KKO C32 C23 C 0 1 N N N N N N -11.745 7.358 6.245 -4.997 -2.368 -3.032 C32 KKO 25 KKO N15 N3 N 0 1 N N N N N N -11.842 11.501 11.820 1.264 -1.617 0.666 N15 KKO 26 KKO N27 N4 N 0 1 Y N N N N N -7.200 8.899 7.685 -5.030 -0.330 1.441 N27 KKO 27 KKO O1 O1 O 0 1 N N N N N N -10.549 13.709 9.391 1.642 0.934 1.154 O1 KKO 28 KKO O31 O2 O 0 1 N N N N N N -11.196 7.848 7.465 -4.178 -2.578 -1.880 O31 KKO 29 KKO O33 O3 O 0 1 N N N N N N -9.807 7.516 10.795 -2.768 -4.100 0.168 O33 KKO 30 KKO S9 S1 S 0 1 Y N N N N N -11.457 16.864 9.937 -1.246 4.838 -1.137 S9 KKO 31 KKO CL19 CL1 CL 0 0 N N N N N N -9.275 15.505 13.722 6.164 -0.310 1.340 CL19 KKO 32 KKO CL23 CL2 CL 0 0 N N N N N N -11.841 16.160 15.462 6.352 0.162 -1.737 CL23 KKO 33 KKO H3 H1 H 0 1 N N N N N N -13.370 12.826 10.443 -1.168 1.540 0.031 H3 KKO 34 KKO H4B H2 H 0 1 N N N N N N -12.735 14.876 8.498 0.278 3.159 1.838 H4B KKO 35 KKO H4A H3 H 0 1 N N N N N N -14.253 14.721 9.447 0.971 3.376 0.213 H4A KKO 36 KKO H6 H4 H 0 1 N N N N N N -13.887 15.528 12.229 -2.135 3.997 2.235 H6 KKO 37 KKO H7 H5 H 0 1 N N N N N N -12.579 17.559 13.274 -3.832 5.606 1.228 H7 KKO 38 KKO H8 H6 H 0 1 N N N N N N -10.852 18.521 11.670 -3.332 6.286 -1.165 H8 KKO 39 KKO H10 H7 H 0 1 N N N N N N -10.041 11.652 10.758 -0.035 -0.775 -0.755 H10 KKO 40 KKO H13A H8 H 0 0 N N N N N N -13.059 9.133 11.042 -0.027 -3.547 2.118 H13A KKO 41 KKO H13B H9 H 0 0 N N N N N N -11.837 8.096 11.855 -0.574 -4.466 0.690 H13B KKO 42 KKO H17 H10 H 0 1 N N N N N N -9.797 13.184 12.207 3.518 -1.154 1.967 H17 KKO 43 KKO H21 H11 H 0 1 N N N N N N -13.769 14.156 14.971 3.816 -0.407 -2.898 H21 KKO 44 KKO H22 H12 H 0 1 N N N N N N -13.784 12.231 13.446 1.689 -1.140 -1.899 H22 KKO 45 KKO H26 H13 H 0 1 N N N N N N -7.581 9.194 9.704 -3.461 -1.279 2.413 H26 KKO 46 KKO H28 H14 H 0 1 N N N N N N -7.102 8.528 5.646 -6.567 0.538 0.347 H28 KKO 47 KKO H11B H15 H 0 0 N N N N N N -10.841 10.618 8.683 -0.925 -0.930 2.162 H11B KKO 48 KKO H11A H16 H 0 0 N N N N N N -12.508 10.534 9.347 -1.935 -0.500 0.757 H11A KKO 49 KKO H14B H17 H 0 0 N N N N N N -12.554 10.089 13.204 1.807 -3.640 0.500 H14B KKO 50 KKO H14A H18 H 0 0 N N N N N N -10.790 10.018 12.873 0.742 -3.037 -0.793 H14A KKO 51 KKO H29 H19 H 0 1 N N N N N N -9.440 7.856 5.397 -6.102 -0.775 -1.676 H29 KKO 52 KKO H32C H20 H 0 0 N N N N N N -12.818 7.157 6.380 -6.035 -2.591 -2.784 H32C KKO 53 KKO H32A H21 H 0 0 N N N N N N -11.609 8.110 5.454 -4.914 -1.330 -3.352 H32A KKO 54 KKO H32B H22 H 0 0 N N N N N N -11.231 6.428 5.959 -4.667 -3.025 -3.837 H32B KKO 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KKO C32 O31 SING N N 1 KKO C29 C28 DOUB Y N 2 KKO C29 C30 SING Y N 3 KKO C28 N27 SING Y N 4 KKO O31 C30 SING N N 5 KKO C30 C25 DOUB Y N 6 KKO N27 C26 DOUB Y N 7 KKO C25 C26 SING Y N 8 KKO C25 C24 SING N N 9 KKO O1 C2 DOUB N N 10 KKO C4 N3 SING N N 11 KKO C4 C5 SING N N 12 KKO C11 N12 SING N N 13 KKO C11 C10 SING N N 14 KKO C2 N3 SING N N 15 KKO C2 C10 SING N N 16 KKO S9 C5 SING Y N 17 KKO S9 C8 SING Y N 18 KKO C24 N12 SING N N 19 KKO C24 O33 DOUB N N 20 KKO N12 C13 SING N N 21 KKO C5 C6 DOUB Y N 22 KKO C10 N15 SING N N 23 KKO C13 C14 SING N N 24 KKO C8 C7 DOUB Y N 25 KKO C6 C7 SING Y N 26 KKO N15 C14 SING N N 27 KKO N15 C16 SING N N 28 KKO C16 C17 DOUB Y N 29 KKO C16 C22 SING Y N 30 KKO C17 C18 SING Y N 31 KKO C22 C21 DOUB Y N 32 KKO C18 CL19 SING N N 33 KKO C18 C20 DOUB Y N 34 KKO C21 C20 SING Y N 35 KKO C20 CL23 SING N N 36 KKO N3 H3 SING N N 37 KKO C4 H4B SING N N 38 KKO C4 H4A SING N N 39 KKO C6 H6 SING N N 40 KKO C7 H7 SING N N 41 KKO C8 H8 SING N N 42 KKO C10 H10 SING N N 43 KKO C13 H13A SING N N 44 KKO C13 H13B SING N N 45 KKO C17 H17 SING N N 46 KKO C21 H21 SING N N 47 KKO C22 H22 SING N N 48 KKO C26 H26 SING N N 49 KKO C28 H28 SING N N 50 KKO C11 H11B SING N N 51 KKO C11 H11A SING N N 52 KKO C14 H14B SING N N 53 KKO C14 H14A SING N N 54 KKO C29 H29 SING N N 55 KKO C32 H32C SING N N 56 KKO C32 H32A SING N N 57 KKO C32 H32B SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KKO InChI InChI 1.06 "InChI=1S/C23H22Cl2N4O3S/c1-32-21-6-7-26-13-17(21)23(31)28-8-9-29(15-4-5-18(24)19(25)11-15)20(14-28)22(30)27-12-16-3-2-10-33-16/h2-7,10-11,13,20H,8-9,12,14H2,1H3,(H,27,30)/t20-/m0/s1" KKO InChIKey InChI 1.06 XAKMNISRDIXWHA-FQEVSTJZSA-N KKO SMILES_CANONICAL CACTVS 3.385 "COc1ccncc1C(=O)N2CCN([C@@H](C2)C(=O)NCc3sccc3)c4ccc(Cl)c(Cl)c4" KKO SMILES CACTVS 3.385 "COc1ccncc1C(=O)N2CCN([CH](C2)C(=O)NCc3sccc3)c4ccc(Cl)c(Cl)c4" KKO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccncc1C(=O)N2CCN([C@@H](C2)C(=O)NCc3cccs3)c4ccc(c(c4)Cl)Cl" KKO SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccncc1C(=O)N2CCN(C(C2)C(=O)NCc3cccs3)c4ccc(c(c4)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id KKO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-(3,4-dichlorophenyl)-4-(4-methoxypyridin-3-yl)carbonyl-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KKO "Create component" 2023-08-15 PDBE KKO "Initial release" 2023-12-06 RCSB #