data_KKX
#
_chem_comp.id KKX
_chem_comp.name "(2~{S},5~{S},6~{S})-2-acetamido-6-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-5,7-bis(oxidanyl)heptanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H28 N3 O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PLP-(5S,6S)-N2-acetyl-DADH"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-27
_chem_comp.pdbx_modified_date 2023-02-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 465.392
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KKX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8GYJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KKX N1 N1 N 0 1 Y N N -70.235 48.766 1.643 -3.209 0.355 2.656 N1 KKX 1
KKX N3 N2 N 0 1 N N N -61.604 46.398 -6.481 3.265 0.485 1.609 N3 KKX 2
KKX C4 C1 C 0 1 Y N N -68.529 49.726 -0.320 -2.549 1.293 0.171 C4 KKX 3
KKX C5 C2 C 0 1 Y N N -69.076 50.600 0.632 -2.474 -0.060 0.463 C5 KKX 4
KKX C6 C3 C 0 1 N N N -68.753 52.062 0.631 -2.026 -1.042 -0.587 C6 KKX 5
KKX C7 C4 C 0 1 N N N -70.110 46.469 0.858 -3.748 2.579 3.514 C7 KKX 6
KKX C8 C5 C 0 1 N N N -67.577 50.242 -1.375 -2.186 1.809 -1.197 C8 KKX 7
KKX C10 C6 C 0 1 N N N -65.537 50.942 -3.257 -0.406 2.341 -3.641 C10 KKX 8
KKX C13 C7 C 0 1 N N N -63.147 47.378 -4.785 3.270 0.477 -0.837 C13 KKX 9
KKX C15 C8 C 0 1 N N N -60.944 48.465 -5.322 5.080 -0.630 0.446 C15 KKX 10
KKX C17 C9 C 0 1 N N N -60.187 45.124 -7.961 2.194 0.748 3.823 C17 KKX 11
KKX C1 C10 C 0 1 Y N N -69.921 50.067 1.585 -2.816 -0.497 1.729 C1 KKX 12
KKX C2 C11 C 0 1 Y N N -69.728 47.913 0.755 -3.293 1.649 2.420 C2 KKX 13
KKX C3 C12 C 0 1 Y N N -68.861 48.366 -0.252 -2.968 2.163 1.173 C3 KKX 14
KKX O1 O1 O 0 1 N N N -69.232 52.689 -0.595 -1.987 -2.356 -0.025 O1 KKX 15
KKX O2 O2 O 0 1 N N N -68.349 47.477 -1.152 -3.057 3.498 0.933 O2 KKX 16
KKX N2 N3 N 0 1 N N N -67.016 49.186 -2.207 -0.761 2.164 -1.225 N2 KKX 17
KKX C9 C13 C 0 1 N N S -66.067 49.506 -3.296 -0.086 1.546 -2.374 C9 KKX 18
KKX O3 O3 O 0 1 N N N -66.532 51.866 -3.650 0.152 3.652 -3.536 O3 KKX 19
KKX C11 C14 C 0 1 N N S -64.919 48.487 -3.271 1.425 1.548 -2.139 C11 KKX 20
KKX P1 P1 P 0 1 N N N -68.514 53.999 -1.195 -1.771 -3.683 -0.911 P1 KKX 21
KKX O4 O4 O 0 1 N N N -68.317 54.951 -0.027 -1.719 -4.970 0.054 O4 KKX 22
KKX O5 O5 O 0 1 N N N -69.502 54.510 -2.226 -2.894 -3.826 -1.865 O5 KKX 23
KKX O6 O6 O 0 1 N N N -67.203 53.544 -1.795 -0.387 -3.566 -1.725 O6 KKX 24
KKX C12 C15 C 0 1 N N N -63.946 48.625 -4.431 1.755 0.669 -0.930 C12 KKX 25
KKX O7 O7 O 0 1 N N N -65.499 47.184 -3.267 1.867 2.884 -1.890 O7 KKX 26
KKX C14 C16 C 0 1 N N S -62.106 47.624 -5.881 3.607 -0.313 0.429 C14 KKX 27
KKX O8 O8 O 0 1 N N N -60.959 49.692 -5.559 5.773 -0.230 1.351 O8 KKX 28
KKX O9 O9 O 0 1 N N N -60.068 47.860 -4.670 5.622 -1.357 -0.544 O9 KKX 29
KKX C16 C17 C 0 1 N N N -60.864 46.406 -7.594 2.652 -0.094 2.660 C16 KKX 30
KKX O10 O10 O 0 1 N N N -60.731 47.424 -8.272 2.468 -1.293 2.670 O10 KKX 31
KKX H1 H1 H 0 1 N N N -61.819 45.523 -6.048 3.481 1.431 1.634 H1 KKX 32
KKX H2 H2 H 0 1 N N N -67.663 52.192 0.702 -2.726 -1.026 -1.423 H2 KKX 33
KKX H3 H3 H 0 1 N N N -69.237 52.540 1.495 -1.032 -0.768 -0.941 H3 KKX 34
KKX H4 H4 H 0 1 N N N -70.795 46.330 1.707 -2.883 2.923 4.082 H4 KKX 35
KKX H5 H5 H 0 1 N N N -70.609 46.155 -0.071 -4.258 3.436 3.075 H5 KKX 36
KKX H6 H6 H 0 1 N N N -69.206 45.861 1.013 -4.432 2.051 4.179 H6 KKX 37
KKX H7 H7 H 0 1 N N N -66.751 50.768 -0.874 -2.382 1.036 -1.941 H7 KKX 38
KKX H8 H8 H 0 1 N N N -68.121 50.946 -2.022 -2.785 2.691 -1.424 H8 KKX 39
KKX H9 H9 H 0 1 N N N -64.679 51.026 -3.940 0.021 1.832 -4.506 H9 KKX 40
KKX H10 H10 H 0 1 N N N -65.214 51.177 -2.232 -1.487 2.415 -3.761 H10 KKX 41
KKX H11 H11 H 0 1 N N N -63.845 46.602 -5.132 3.622 -0.070 -1.711 H11 KKX 42
KKX H12 H12 H 0 1 N N N -62.628 47.026 -3.881 3.757 1.451 -0.797 H12 KKX 43
KKX H13 H13 H 0 1 N N N -59.599 45.269 -8.880 1.172 1.084 3.648 H13 KKX 44
KKX H14 H14 H 0 1 N N N -59.519 44.815 -7.143 2.231 0.156 4.737 H14 KKX 45
KKX H15 H15 H 0 1 N N N -60.945 44.345 -8.130 2.849 1.614 3.924 H15 KKX 46
KKX H16 H16 H 0 1 N N N -70.350 50.732 2.320 -2.759 -1.550 1.962 H16 KKX 47
KKX H17 H17 H 0 1 N N N -68.677 46.606 -0.959 -3.921 3.781 0.603 H17 KKX 48
KKX H18 H18 H 0 1 N N N -67.790 48.715 -2.631 -0.308 1.910 -0.360 H18 KKX 49
KKX H20 H20 H 0 1 N N N -66.595 49.379 -4.253 -0.435 0.520 -2.490 H20 KKX 50
KKX H21 H21 H 0 1 N N N -66.178 52.747 -3.617 -0.012 4.213 -4.306 H21 KKX 51
KKX H22 H22 H 0 1 N N N -64.357 48.636 -2.337 1.931 1.156 -3.021 H22 KKX 52
KKX H23 H23 H 0 1 N N N -68.861 55.720 -0.149 -1.592 -5.807 -0.413 H23 KKX 53
KKX H24 H24 H 0 1 N N N -67.228 53.661 -2.737 0.384 -3.393 -1.167 H24 KKX 54
KKX H25 H25 H 0 1 N N N -63.231 49.422 -4.178 1.272 -0.302 -1.045 H25 KKX 55
KKX H26 H26 H 0 1 N N N -64.523 48.919 -5.321 1.393 1.150 -0.022 H26 KKX 56
KKX H27 H27 H 0 1 N N N -66.105 47.109 -2.539 1.458 3.296 -1.117 H27 KKX 57
KKX H28 H28 H 0 1 N N N -62.592 48.220 -6.667 3.035 -1.242 0.441 H28 KKX 58
KKX H29 H29 H 0 1 N N N -59.408 48.477 -4.378 6.571 -1.535 -0.489 H29 KKX 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KKX O10 C16 DOUB N N 1
KKX C17 C16 SING N N 2
KKX C16 N3 SING N N 3
KKX N3 C14 SING N N 4
KKX C14 C15 SING N N 5
KKX C14 C13 SING N N 6
KKX O8 C15 DOUB N N 7
KKX C15 O9 SING N N 8
KKX C13 C12 SING N N 9
KKX C12 C11 SING N N 10
KKX O3 C10 SING N N 11
KKX C9 C11 SING N N 12
KKX C9 C10 SING N N 13
KKX C9 N2 SING N N 14
KKX C11 O7 SING N N 15
KKX O5 P1 DOUB N N 16
KKX N2 C8 SING N N 17
KKX O6 P1 SING N N 18
KKX C8 C4 SING N N 19
KKX P1 O1 SING N N 20
KKX P1 O4 SING N N 21
KKX O2 C3 SING N N 22
KKX O1 C6 SING N N 23
KKX C4 C3 DOUB Y N 24
KKX C4 C5 SING Y N 25
KKX C3 C2 SING Y N 26
KKX C6 C5 SING N N 27
KKX C5 C1 DOUB Y N 28
KKX C2 C7 SING N N 29
KKX C2 N1 DOUB Y N 30
KKX C1 N1 SING Y N 31
KKX N3 H1 SING N N 32
KKX C6 H2 SING N N 33
KKX C6 H3 SING N N 34
KKX C7 H4 SING N N 35
KKX C7 H5 SING N N 36
KKX C7 H6 SING N N 37
KKX C8 H7 SING N N 38
KKX C8 H8 SING N N 39
KKX C10 H9 SING N N 40
KKX C10 H10 SING N N 41
KKX C13 H11 SING N N 42
KKX C13 H12 SING N N 43
KKX C17 H13 SING N N 44
KKX C17 H14 SING N N 45
KKX C17 H15 SING N N 46
KKX C1 H16 SING N N 47
KKX O2 H17 SING N N 48
KKX N2 H18 SING N N 49
KKX C9 H20 SING N N 50
KKX O3 H21 SING N N 51
KKX C11 H22 SING N N 52
KKX O4 H23 SING N N 53
KKX O6 H24 SING N N 54
KKX C12 H25 SING N N 55
KKX C12 H26 SING N N 56
KKX O7 H27 SING N N 57
KKX C14 H28 SING N N 58
KKX O9 H29 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KKX InChI InChI 1.06 "InChI=1S/C17H28N3O10P/c1-9-16(24)12(11(5-18-9)8-30-31(27,28)29)6-19-14(7-21)15(23)4-3-13(17(25)26)20-10(2)22/h5,13-15,19,21,23-24H,3-4,6-8H2,1-2H3,(H,20,22)(H,25,26)(H2,27,28,29)/t13-,14-,15-/m0/s1"
KKX InChIKey InChI 1.06 FNGADGGFBAIBRP-KKUMJFAQSA-N
KKX SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CC[C@H](O)[C@H](CO)NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"
KKX SMILES CACTVS 3.385 "CC(=O)N[CH](CC[CH](O)[CH](CO)NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"
KKX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CO)[C@H](CC[C@@H](C(=O)O)NC(=O)C)O)O"
KKX SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CO)C(CCC(C(=O)O)NC(=O)C)O)O"
#
_pdbx_chem_comp_identifier.comp_id KKX
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S},5~{S},6~{S})-2-acetamido-6-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-5,7-bis(oxidanyl)heptanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KKX "Create component" 2022-09-27 PDBJ
KKX "Initial release" 2023-02-22 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id KKX
_pdbx_chem_comp_synonyms.name "PLP-(5S,6S)-N2-acetyl-DADH"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#