data_KL8 # _chem_comp.id KL8 _chem_comp.name "(3~{S})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 B O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2019-06-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KL8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RPN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KL8 B02 B1 B -1 1 N N N N N N -35.233 -10.908 68.239 -0.800 -1.114 0.495 B02 KL8 1 KL8 C04 C1 C 0 1 N N S N N N -33.973 -11.201 67.359 0.171 -0.022 -0.161 C04 KL8 2 KL8 C06 C2 C 0 1 N N N N N N -31.805 -13.121 66.484 2.877 0.511 -0.837 C06 KL8 3 KL8 C07 C3 C 0 1 Y N N N N N -31.832 -13.493 65.000 4.335 0.292 -0.526 C07 KL8 4 KL8 C08 C4 C 0 1 Y N N N N N -32.961 -13.250 64.235 4.982 -0.832 -1.002 C08 KL8 5 KL8 C09 C5 C 0 1 Y N N N N N -32.970 -13.587 62.891 6.319 -1.034 -0.716 C09 KL8 6 KL8 C10 C6 C 0 1 Y N N N N N -31.850 -14.164 62.309 7.010 -0.110 0.047 C10 KL8 7 KL8 C11 C7 C 0 1 Y N N N N N -30.718 -14.403 63.072 6.363 1.015 0.523 C11 KL8 8 KL8 C12 C8 C 0 1 Y N N N N N -30.711 -14.068 64.416 5.027 1.219 0.232 C12 KL8 9 KL8 C13 C9 C 0 1 N N N N N N -32.752 -10.420 67.886 -0.348 1.363 0.243 C13 KL8 10 KL8 C14 C10 C 0 1 Y N N N N N -33.224 -8.951 67.814 -1.847 1.397 0.069 C14 KL8 11 KL8 C15 C11 C 0 1 Y N N N N N -34.477 -8.712 68.381 -2.587 0.239 -0.071 C15 KL8 12 KL8 C16 C12 C 0 1 Y N N N N N -35.014 -7.435 68.345 -3.984 0.329 -0.223 C16 KL8 13 KL8 C17 C13 C 0 1 N N N N N N -36.374 -7.162 68.956 -4.790 -0.896 -0.369 C17 KL8 14 KL8 C20 C14 C 0 1 Y N N N N N -34.308 -6.407 67.727 -4.606 1.578 -0.235 C20 KL8 15 KL8 C21 C15 C 0 1 Y N N N N N -33.052 -6.659 67.146 -3.850 2.721 -0.097 C21 KL8 16 KL8 C22 C16 C 0 1 Y N N N N N -32.511 -7.943 67.186 -2.478 2.630 0.054 C22 KL8 17 KL8 O01 O1 O 0 1 N N N N N N -36.522 -10.724 67.220 -0.307 -2.368 0.266 O01 KL8 18 KL8 O03 O2 O 0 1 N N N N N N -35.843 -12.182 69.093 -0.894 -0.896 1.841 O03 KL8 19 KL8 O18 O3 O 0 1 N N N N N N -36.811 -7.880 69.897 -6.127 -0.810 -0.515 O18 KL8 20 KL8 O19 O4 O 0 1 N N N N N N -37.064 -6.226 68.469 -4.249 -1.984 -0.359 O19 KL8 21 KL8 O23 O5 O 0 1 N N N N N N -35.165 -9.825 69.012 -2.032 -0.995 -0.075 O23 KL8 22 KL8 S05 S1 S 0 1 N N N N N N -33.480 -12.979 67.182 1.861 -0.250 0.458 S05 KL8 23 KL8 H1 H1 H 0 1 N N N N N N -34.186 -10.859 66.335 0.158 -0.119 -1.246 H1 KL8 24 KL8 H2 H2 H 0 1 N N N N N N -31.255 -13.898 67.035 2.671 1.581 -0.879 H2 KL8 25 KL8 H3 H3 H 0 1 N N N N N N -31.289 -12.156 66.599 2.639 0.058 -1.799 H3 KL8 26 KL8 H4 H4 H 0 1 N N N N N N -33.833 -12.799 64.685 4.443 -1.554 -1.597 H4 KL8 27 KL8 H5 H5 H 0 1 N N N N N N -33.851 -13.400 62.295 6.825 -1.913 -1.087 H5 KL8 28 KL8 H6 H6 H 0 1 N N N N N N -31.861 -14.427 61.262 8.054 -0.267 0.271 H6 KL8 29 KL8 H7 H7 H 0 1 N N N N N N -29.844 -14.849 62.620 6.902 1.737 1.118 H7 KL8 30 KL8 H8 H8 H 0 1 N N N N N N -29.830 -14.255 65.012 4.521 2.098 0.603 H8 KL8 31 KL8 H9 H9 H 0 1 N N N N N N -32.514 -10.709 68.920 -0.097 1.556 1.286 H9 KL8 32 KL8 H10 H10 H 0 1 N N N N N N -31.871 -10.584 67.247 0.111 2.123 -0.390 H10 KL8 33 KL8 H11 H11 H 0 1 N N N N N N -34.726 -5.412 67.693 -5.678 1.648 -0.352 H11 KL8 34 KL8 H12 H12 H 0 1 N N N N N N -32.507 -5.858 66.669 -4.328 3.689 -0.109 H12 KL8 35 KL8 H13 H13 H 0 1 N N N N N N -31.552 -8.149 66.735 -1.892 3.531 0.162 H13 KL8 36 KL8 H14 H14 H 0 1 N N N N N N -37.305 -10.544 67.728 -0.856 -3.078 0.626 H14 KL8 37 KL8 H15 H15 H 0 1 N N N N N N -35.218 -12.446 69.758 -1.479 -1.514 2.300 H15 KL8 38 KL8 H16 H16 H 0 1 N N N N N N -37.684 -7.593 70.136 -6.613 -1.641 -0.607 H16 KL8 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KL8 C10 C09 DOUB Y N 1 KL8 C10 C11 SING Y N 2 KL8 C09 C08 SING Y N 3 KL8 C11 C12 DOUB Y N 4 KL8 C08 C07 DOUB Y N 5 KL8 C12 C07 SING Y N 6 KL8 C07 C06 SING N N 7 KL8 C06 S05 SING N N 8 KL8 C21 C22 DOUB Y N 9 KL8 C21 C20 SING Y N 10 KL8 S05 C04 SING N N 11 KL8 C22 C14 SING Y N 12 KL8 O01 B02 SING N N 13 KL8 C04 C13 SING N N 14 KL8 C04 B02 SING N N 15 KL8 C20 C16 DOUB Y N 16 KL8 C14 C13 SING N N 17 KL8 C14 C15 DOUB Y N 18 KL8 B02 O23 SING N N 19 KL8 B02 O03 SING N N 20 KL8 C16 C15 SING Y N 21 KL8 C16 C17 SING N N 22 KL8 C15 O23 SING N N 23 KL8 O19 C17 DOUB N N 24 KL8 C17 O18 SING N N 25 KL8 C04 H1 SING N N 26 KL8 C06 H2 SING N N 27 KL8 C06 H3 SING N N 28 KL8 C08 H4 SING N N 29 KL8 C09 H5 SING N N 30 KL8 C10 H6 SING N N 31 KL8 C11 H7 SING N N 32 KL8 C12 H8 SING N N 33 KL8 C13 H9 SING N N 34 KL8 C13 H10 SING N N 35 KL8 C20 H11 SING N N 36 KL8 C21 H12 SING N N 37 KL8 C22 H13 SING N N 38 KL8 O01 H14 SING N N 39 KL8 O03 H15 SING N N 40 KL8 O18 H16 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KL8 InChI InChI 1.03 "InChI=1S/C16H16BO5S/c18-16(19)13-8-4-7-12-9-14(17(20,21)22-15(12)13)23-10-11-5-2-1-3-6-11/h1-8,14,20-21H,9-10H2,(H,18,19)/q-1/t14-/m1/s1" KL8 InChIKey InChI 1.03 NCOFNSDHLWCKKT-CQSZACIVSA-N KL8 SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1cccc2C[C@@H](SCc3ccccc3)[B-](O)(O)Oc12" KL8 SMILES CACTVS 3.385 "OC(=O)c1cccc2C[CH](SCc3ccccc3)[B-](O)(O)Oc12" KL8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1([C@@H](Cc2cccc(c2O1)C(=O)O)SCc3ccccc3)(O)O" KL8 SMILES "OpenEye OEToolkits" 2.0.7 "[B-]1(C(Cc2cccc(c2O1)C(=O)O)SCc3ccccc3)(O)O" # _pdbx_chem_comp_identifier.comp_id KL8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S})-3,3-bis(oxidanyl)-4-(phenylmethylsulfanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(6),7,9-triene-10-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KL8 "Create component" 2019-06-04 EBI KL8 "Initial release" 2020-03-25 RCSB KL8 "Modify formal charge" 2020-04-09 PDBE KL8 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KL8 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #