data_KL9 # _chem_comp.id KL9 _chem_comp.name "7-amino-N-(2-{4-[(1R,3s,5S)-8-azabicyclo[3.2.1]octan-3-yl]phenyl}ethyl)-3-methylthieno[2,3-b]pyrazine-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-04 _chem_comp.pdbx_modified_date 2023-02-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.558 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KL9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TUO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KL9 C4 C1 C 0 1 Y N N 4.245 23.398 -15.403 6.252 0.780 0.020 C4 KL9 1 KL9 C14 C2 C 0 1 Y N N -1.927 25.496 -9.537 -2.819 -0.807 1.027 C14 KL9 2 KL9 C5 C3 C 0 1 Y N N 5.564 23.361 -17.270 8.558 0.755 0.081 C5 KL9 3 KL9 C6 C4 C 0 1 Y N N 4.459 22.948 -18.041 8.546 -0.634 0.124 C6 KL9 4 KL9 C11 C5 C 0 1 Y N N -2.297 24.568 -10.496 -2.112 -0.986 -0.147 C11 KL9 5 KL9 C7 C6 C 0 1 N N N 4.579 22.697 -19.513 9.845 -1.396 0.180 C7 KL9 6 KL9 C8 C7 C 0 1 Y N N 3.820 23.608 -14.028 4.907 1.333 -0.032 C8 KL9 7 KL9 C9 C8 C 0 1 N N N -0.414 23.364 -11.455 0.161 0.006 -0.117 C9 KL9 8 KL9 C10 C9 C 0 1 N N N -1.478 24.383 -11.749 -0.639 -1.299 -0.098 C10 KL9 9 KL9 C12 C10 C 0 1 Y N N -3.392 23.760 -10.238 -2.756 -0.879 -1.365 C12 KL9 10 KL9 C13 C11 C 0 1 Y N N -4.131 23.912 -9.074 -4.108 -0.592 -1.410 C13 KL9 11 KL9 N1 N1 N 0 1 Y N N 5.467 23.591 -15.952 7.432 1.427 0.031 N1 KL9 12 KL9 N2 N2 N 0 1 Y N N 3.266 22.768 -17.498 7.403 -1.286 0.106 N2 KL9 13 KL9 C3 C12 C 0 1 Y N N 3.153 22.996 -16.184 6.246 -0.619 0.056 C3 KL9 14 KL9 N3 N3 N 0 1 N N N 4.649 24.069 -13.077 4.652 2.697 -0.081 N3 KL9 15 KL9 C1 C13 C 0 1 N N N 1.720 23.552 -12.589 2.495 0.703 -0.077 C1 KL9 16 KL9 C15 C14 C 0 1 Y N N -2.662 25.646 -8.371 -4.171 -0.520 0.983 C15 KL9 17 KL9 C16 C15 C 0 1 Y N N -3.785 24.867 -8.131 -4.815 -0.413 -0.236 C16 KL9 18 KL9 C17 C16 C 0 1 N N S -4.600 25.013 -6.862 -6.288 -0.099 -0.284 C17 KL9 19 KL9 C18 C17 C 0 1 N N N -5.955 24.385 -6.823 -7.067 -1.194 0.451 C18 KL9 20 KL9 C19 C18 C 0 1 N N S -6.508 24.498 -5.412 -8.547 -0.789 0.523 C19 KL9 21 KL9 C2 C19 C 0 1 Y N N 2.471 23.371 -13.842 3.925 0.399 -0.030 C2 KL9 22 KL9 C20 C20 C 0 1 N N N -6.413 25.868 -4.750 -8.981 -0.329 -0.888 C20 KL9 23 KL9 C21 C21 C 0 1 N N N -5.033 25.867 -4.050 -8.659 1.179 -0.928 C21 KL9 24 KL9 C22 C22 C 0 1 N N R -4.448 24.510 -4.392 -8.060 1.493 0.462 C22 KL9 25 KL9 C23 C23 C 0 1 N N N -3.705 24.497 -5.710 -6.544 1.254 0.386 C23 KL9 26 KL9 N4 N4 N 0 1 N N N 0.454 23.153 -12.603 1.593 -0.299 -0.070 N4 KL9 27 KL9 N5 N5 N 0 1 N N N -5.657 23.670 -4.526 -8.627 0.444 1.350 N5 KL9 28 KL9 O1 O1 O 0 1 N N N 2.264 24.055 -11.605 2.120 1.860 -0.122 O1 KL9 29 KL9 S1 S1 S 0 1 Y N N 1.680 22.820 -15.296 4.593 -1.220 0.025 S1 KL9 30 KL9 H14 H1 H 0 1 N N N -1.054 26.111 -9.700 -2.317 -0.895 1.979 H14 KL9 31 KL9 H1 H2 H 0 1 N N N 6.519 23.497 -17.756 9.499 1.285 0.090 H1 KL9 32 KL9 H2 H3 H 0 1 N N N 3.602 22.389 -19.914 10.189 -1.604 -0.833 H2 KL9 33 KL9 H3 H4 H 0 1 N N N 4.908 23.618 -20.016 10.594 -0.799 0.702 H3 KL9 34 KL9 H4 H5 H 0 1 N N N 5.316 21.899 -19.690 9.693 -2.335 0.712 H4 KL9 35 KL9 H8 H6 H 0 1 N N N -0.895 22.411 -11.191 -0.064 0.556 -1.031 H8 KL9 36 KL9 H9 H7 H 0 1 N N N 0.193 23.715 -10.608 -0.111 0.611 0.748 H9 KL9 37 KL9 H10 H8 H 0 1 N N N -1.013 25.337 -12.037 -0.414 -1.850 0.815 H10 KL9 38 KL9 H11 H9 H 0 1 N N N -2.121 24.027 -12.567 -0.367 -1.904 -0.964 H11 KL9 39 KL9 H12 H10 H 0 1 N N N -3.674 23.001 -10.953 -2.204 -1.019 -2.282 H12 KL9 40 KL9 H13 H11 H 0 1 N N N -4.988 23.278 -8.900 -4.611 -0.508 -2.362 H13 KL9 41 KL9 H5 H12 H 0 1 N N N 4.156 24.138 -12.210 5.389 3.328 -0.081 H5 KL9 42 KL9 H6 H13 H 0 1 N N N 5.420 23.440 -12.973 3.738 3.019 -0.115 H6 KL9 43 KL9 H15 H14 H 0 1 N N N -2.356 26.379 -7.639 -4.725 -0.386 1.900 H15 KL9 44 KL9 H16 H15 H 0 1 N N N -4.737 26.091 -6.693 -6.616 -0.056 -1.323 H16 KL9 45 KL9 H18 H16 H 0 1 N N N -6.624 24.905 -7.525 -6.971 -2.136 -0.091 H18 KL9 46 KL9 H17 H17 H 0 1 N N N -5.879 23.325 -7.106 -6.670 -1.310 1.459 H17 KL9 47 KL9 H19 H18 H 0 1 N N N -7.549 24.143 -5.388 -9.175 -1.595 0.905 H19 KL9 48 KL9 H21 H19 H 0 1 N N N -6.466 26.668 -5.503 -8.412 -0.859 -1.651 H21 KL9 49 KL9 H20 H20 H 0 1 N N N -7.221 26.002 -4.016 -10.050 -0.493 -1.028 H20 KL9 50 KL9 H22 H21 H 0 1 N N N -4.397 26.676 -4.439 -7.932 1.391 -1.711 H22 KL9 51 KL9 H23 H22 H 0 1 N N N -5.147 25.981 -2.962 -9.569 1.757 -1.090 H23 KL9 52 KL9 H24 H23 H 0 1 N N N -3.802 24.150 -3.578 -8.309 2.499 0.801 H24 KL9 53 KL9 H25 H24 H 0 1 N N N -3.390 23.467 -5.934 -6.123 1.249 1.391 H25 KL9 54 KL9 H26 H25 H 0 1 N N N -2.818 25.142 -5.628 -6.078 2.046 -0.202 H26 KL9 55 KL9 H7 H26 H 0 1 N N N 0.091 22.700 -13.417 1.892 -1.221 -0.034 H7 KL9 56 KL9 H28 H27 H 0 1 N N N -6.094 23.518 -3.640 -9.583 0.655 1.594 H28 KL9 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KL9 C7 C6 SING N N 1 KL9 C6 N2 DOUB Y N 2 KL9 C6 C5 SING Y N 3 KL9 N2 C3 SING Y N 4 KL9 C5 N1 DOUB Y N 5 KL9 C3 C4 DOUB Y N 6 KL9 C3 S1 SING Y N 7 KL9 N1 C4 SING Y N 8 KL9 C4 C8 SING Y N 9 KL9 S1 C2 SING Y N 10 KL9 C8 C2 DOUB Y N 11 KL9 C8 N3 SING N N 12 KL9 C2 C1 SING N N 13 KL9 N4 C1 SING N N 14 KL9 N4 C9 SING N N 15 KL9 C1 O1 DOUB N N 16 KL9 C10 C9 SING N N 17 KL9 C10 C11 SING N N 18 KL9 C11 C12 DOUB Y N 19 KL9 C11 C14 SING Y N 20 KL9 C12 C13 SING Y N 21 KL9 C14 C15 DOUB Y N 22 KL9 C13 C16 DOUB Y N 23 KL9 C15 C16 SING Y N 24 KL9 C16 C17 SING N N 25 KL9 C17 C18 SING N N 26 KL9 C17 C23 SING N N 27 KL9 C18 C19 SING N N 28 KL9 C23 C22 SING N N 29 KL9 C19 C20 SING N N 30 KL9 C19 N5 SING N N 31 KL9 C20 C21 SING N N 32 KL9 N5 C22 SING N N 33 KL9 C22 C21 SING N N 34 KL9 C14 H14 SING N N 35 KL9 C5 H1 SING N N 36 KL9 C7 H2 SING N N 37 KL9 C7 H3 SING N N 38 KL9 C7 H4 SING N N 39 KL9 C9 H8 SING N N 40 KL9 C9 H9 SING N N 41 KL9 C10 H10 SING N N 42 KL9 C10 H11 SING N N 43 KL9 C12 H12 SING N N 44 KL9 C13 H13 SING N N 45 KL9 N3 H5 SING N N 46 KL9 N3 H6 SING N N 47 KL9 C15 H15 SING N N 48 KL9 C17 H16 SING N N 49 KL9 C18 H18 SING N N 50 KL9 C18 H17 SING N N 51 KL9 C19 H19 SING N N 52 KL9 C20 H21 SING N N 53 KL9 C20 H20 SING N N 54 KL9 C21 H22 SING N N 55 KL9 C21 H23 SING N N 56 KL9 C22 H24 SING N N 57 KL9 C23 H25 SING N N 58 KL9 C23 H26 SING N N 59 KL9 N4 H7 SING N N 60 KL9 N5 H28 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KL9 SMILES ACDLabs 12.01 "Cc1nc2sc(c(N)c2nc1)C(=O)NCCc1ccc(cc1)C1CC2CCC(N2)C1" KL9 InChI InChI 1.03 "InChI=1S/C23H27N5OS/c1-13-12-26-20-19(24)21(30-23(20)27-13)22(29)25-9-8-14-2-4-15(5-3-14)16-10-17-6-7-18(11-16)28-17/h2-5,12,16-18,28H,6-11,24H2,1H3,(H,25,29)/t16-,17-,18+" KL9 InChIKey InChI 1.03 HYCWFJHZOMDKSR-NNZMDNLPSA-N KL9 SMILES_CANONICAL CACTVS 3.385 "Cc1cnc2c(N)c(sc2n1)C(=O)NCCc3ccc(cc3)[C@H]4C[C@@H]5CC[C@H](C4)N5" KL9 SMILES CACTVS 3.385 "Cc1cnc2c(N)c(sc2n1)C(=O)NCCc3ccc(cc3)[CH]4C[CH]5CC[CH](C4)N5" KL9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cnc2c(c(sc2n1)C(=O)NCCc3ccc(cc3)C4C[C@H]5CC[C@@H](C4)N5)N" KL9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cnc2c(c(sc2n1)C(=O)NCCc3ccc(cc3)C4CC5CCC(C4)N5)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KL9 "SYSTEMATIC NAME" ACDLabs 12.01 "7-amino-N-(2-{4-[(1R,3s,5S)-8-azabicyclo[3.2.1]octan-3-yl]phenyl}ethyl)-3-methylthieno[2,3-b]pyrazine-6-carboxamide" KL9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-[4-[(1~{S},5~{R})-8-azabicyclo[3.2.1]octan-3-yl]phenyl]ethyl]-7-azanyl-3-methyl-thieno[2,3-b]pyrazine-6-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KL9 "Create component" 2022-02-04 RCSB KL9 "Initial release" 2023-02-15 RCSB #