data_KLO # _chem_comp.id KLO _chem_comp.name "5-(phenylmethyl)pyrimidine-2,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H10 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-30 _chem_comp.pdbx_modified_date 2023-09-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 202.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KLO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A0T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KLO C10 C1 C 0 1 Y N N -0.010 -7.320 -17.942 1.758 -0.085 -0.630 C10 KLO 1 KLO C13 C2 C 0 1 Y N N -1.953 -5.424 -17.385 3.878 -0.258 1.136 C13 KLO 2 KLO C15 C3 C 0 1 Y N N -1.306 -7.504 -18.398 2.268 1.061 -0.048 C15 KLO 3 KLO O01 O1 O 0 1 N N N -0.439 -10.336 -16.784 -0.676 2.228 -0.338 O01 KLO 4 KLO C02 C4 C 0 1 Y N N 0.848 -10.019 -16.362 -1.272 1.015 -0.246 C02 KLO 5 KLO N03 N1 N 0 1 Y N N 1.350 -10.654 -15.314 -2.418 0.875 0.409 N03 KLO 6 KLO C04 C5 C 0 1 Y N N 2.580 -10.384 -14.903 -3.003 -0.308 0.501 C04 KLO 7 KLO O05 O2 O 0 1 N N N 3.062 -11.066 -13.795 -4.172 -0.416 1.177 O05 KLO 8 KLO N06 N2 N 0 1 Y N N 3.338 -9.477 -15.488 -2.476 -1.388 -0.051 N06 KLO 9 KLO C07 C6 C 0 1 Y N N 2.886 -8.813 -16.559 -1.334 -1.323 -0.720 C07 KLO 10 KLO C08 C7 C 0 1 Y N N 1.602 -9.058 -17.029 -0.693 -0.104 -0.844 C08 KLO 11 KLO C09 C8 C 0 1 N N N 1.064 -8.336 -18.259 0.607 0.010 -1.598 C09 KLO 12 KLO C11 C9 C 0 1 Y N N 0.324 -6.194 -17.209 2.308 -1.317 -0.329 C11 KLO 13 KLO C12 C10 C 0 1 Y N N -0.652 -5.246 -16.936 3.368 -1.403 0.554 C12 KLO 14 KLO C14 C11 C 0 1 Y N N -2.286 -6.561 -18.115 3.328 0.974 0.835 C14 KLO 15 KLO H1 H1 H 0 1 N N N -2.706 -4.681 -17.168 4.706 -0.325 1.826 H1 KLO 16 KLO H2 H2 H 0 1 N N N -1.554 -8.383 -18.975 1.839 2.023 -0.284 H2 KLO 17 KLO H4 H4 H 0 1 N N N 3.517 -8.090 -17.055 -0.911 -2.210 -1.168 H4 KLO 18 KLO H6 H6 H 0 1 N N N 0.643 -9.085 -18.946 0.644 0.969 -2.114 H6 KLO 19 KLO H7 H7 H 0 1 N N N 1.900 -7.817 -18.751 0.676 -0.798 -2.326 H7 KLO 20 KLO H8 H8 H 0 1 N N N 1.334 -6.055 -16.853 1.909 -2.212 -0.783 H8 KLO 21 KLO H9 H9 H 0 1 N N N -0.397 -4.363 -16.370 3.797 -2.366 0.790 H9 KLO 22 KLO H10 H10 H 0 1 N N N -3.299 -6.709 -18.459 3.727 1.869 1.289 H10 KLO 23 KLO H11 H11 H 0 1 N N N -0.800 -11.010 -16.221 -0.057 2.417 0.381 H11 KLO 24 KLO H3 H3 H 0 1 N N N 3.940 -10.763 -13.593 -4.957 -0.284 0.629 H3 KLO 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KLO C15 C14 DOUB Y N 1 KLO C15 C10 SING Y N 2 KLO C09 C10 SING N N 3 KLO C09 C08 SING N N 4 KLO C14 C13 SING Y N 5 KLO C10 C11 DOUB Y N 6 KLO C13 C12 DOUB Y N 7 KLO C11 C12 SING Y N 8 KLO C08 C07 DOUB Y N 9 KLO C08 C02 SING Y N 10 KLO O01 C02 SING N N 11 KLO C07 N06 SING Y N 12 KLO C02 N03 DOUB Y N 13 KLO N06 C04 DOUB Y N 14 KLO N03 C04 SING Y N 15 KLO C04 O05 SING N N 16 KLO C13 H1 SING N N 17 KLO C15 H2 SING N N 18 KLO C07 H4 SING N N 19 KLO C09 H6 SING N N 20 KLO C09 H7 SING N N 21 KLO C11 H8 SING N N 22 KLO C12 H9 SING N N 23 KLO C14 H10 SING N N 24 KLO O01 H11 SING N N 25 KLO O05 H3 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KLO InChI InChI 1.06 "InChI=1S/C11H10N2O2/c14-10-9(7-12-11(15)13-10)6-8-4-2-1-3-5-8/h1-5,7H,6H2,(H2,12,13,14,15)" KLO InChIKey InChI 1.06 RPZOVLGFKOOIRP-UHFFFAOYSA-N KLO SMILES_CANONICAL CACTVS 3.385 "Oc1ncc(Cc2ccccc2)c(O)n1" KLO SMILES CACTVS 3.385 "Oc1ncc(Cc2ccccc2)c(O)n1" KLO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cc2cnc(nc2O)O" KLO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cc2cnc(nc2O)O" # _pdbx_chem_comp_identifier.comp_id KLO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(phenylmethyl)pyrimidine-2,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KLO "Create component" 2022-05-30 PDBE KLO "Modify descriptor" 2022-08-22 RCSB KLO "Initial release" 2023-09-13 RCSB #