data_KM3 # _chem_comp.id KM3 _chem_comp.name "{N-(4-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}butyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}iron(3+)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H36 Fe N6 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 3 _chem_comp.pdbx_initial_date 2020-01-31 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 552.513 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KM3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6VOB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KM3 O3 O1 O 0 1 N N N 14.268 29.442 -8.207 10.668 -1.176 2.515 O3 KM3 1 KM3 C9 C1 C 0 1 N N N 15.490 29.387 -8.448 10.587 -0.520 1.495 C9 KM3 2 KM3 N1 N1 N 0 1 N N N 16.450 29.553 -7.523 11.409 -0.688 0.450 N1 KM3 3 KM3 N2 N2 N 0 1 N N N 16.005 29.210 -9.691 9.663 0.433 1.310 N2 KM3 4 KM3 C10 C2 C 0 1 N N S 17.465 29.229 -9.641 9.845 1.027 -0.024 C10 KM3 5 KM3 C8 C3 C 0 1 N N R 17.802 29.494 -8.095 11.037 0.261 -0.611 C8 KM3 6 KM3 C7 C4 C 0 1 N N N 18.564 28.236 -7.614 10.661 -0.523 -1.884 C7 KM3 7 KM3 S1 S1 S 0 1 N N N 17.969 26.822 -8.583 8.852 -0.783 -1.680 S1 KM3 8 KM3 C6 C5 C 0 1 N N S 18.103 27.906 -10.045 8.559 0.826 -0.848 C6 KM3 9 KM3 C5 C6 C 0 1 N N N 17.522 27.236 -11.291 7.335 0.746 0.067 C5 KM3 10 KM3 C4 C7 C 0 1 N N N 18.420 26.130 -11.922 6.066 0.672 -0.784 C4 KM3 11 KM3 C3 C8 C 0 1 N N N 17.721 25.480 -13.143 4.842 0.592 0.132 C3 KM3 12 KM3 C2 C9 C 0 1 N N N 18.609 24.347 -13.731 3.573 0.518 -0.719 C2 KM3 13 KM3 C01 C10 C 0 1 N N N 19.862 24.890 -14.401 2.368 0.439 0.182 C01 KM3 14 KM3 C25 C11 C 0 1 N N N 23.190 25.309 -14.441 -1.309 0.215 -0.324 C25 KM3 15 KM3 N6 N3 N 0 1 N N N 21.008 24.135 -14.229 1.132 0.366 -0.350 N6 KM3 16 KM3 C26 C12 C 0 1 N N N 24.482 25.303 -15.284 -2.533 0.134 0.591 C26 KM3 17 KM3 O1 O2 O 0 1 N N N 19.904 26.012 -15.037 2.510 0.440 1.387 O1 KM3 18 KM3 C23 C13 C 0 1 N N N 24.504 26.500 -16.232 -3.802 0.061 -0.260 C23 KM3 19 KM3 C24 C14 C 0 1 N N N 22.186 24.366 -15.103 -0.040 0.288 0.527 C24 KM3 20 KM3 N3 N4 N 1 1 N N N 25.782 26.795 -16.995 -4.977 -0.017 0.619 N3 KM3 21 KM3 C11 C15 C 0 1 N N N 26.348 25.521 -17.547 -5.203 -1.339 1.212 C11 KM3 22 KM3 C17 C16 C 0 1 N N N 25.277 27.572 -18.150 -5.363 1.261 1.227 C17 KM3 23 KM3 FE1 FE1 FE 0 0 N N N 27.192 27.847 -15.856 -6.759 -0.122 -0.195 FE1 KM3 24 KM3 N4 N5 N 1 1 Y N N 27.818 25.983 -15.723 -7.102 -1.903 -0.344 N4 KM3 25 KM3 C16 C17 C 0 1 Y N N 28.683 25.519 -14.843 -7.912 -2.711 -0.963 C16 KM3 26 KM3 C15 C18 C 0 1 Y N N 29.073 24.262 -14.837 -7.849 -4.082 -0.813 C15 KM3 27 KM3 C14 C19 C 0 1 Y N N 28.626 23.422 -15.646 -6.876 -4.589 0.035 C14 KM3 28 KM3 C13 C20 C 0 1 Y N N 27.792 23.725 -16.497 -6.033 -3.717 0.683 C13 KM3 29 KM3 C12 C21 C 0 1 Y N N 27.380 24.967 -16.577 -6.111 -2.337 0.498 C12 KM3 30 KM3 N5 N6 N 1 1 Y N N 25.921 29.253 -16.567 -7.312 1.607 -0.339 N5 KM3 31 KM3 C18 C22 C 0 1 Y N N 25.039 29.003 -17.685 -6.384 2.149 0.520 C18 KM3 32 KM3 C22 C23 C 0 1 Y N N 25.842 30.529 -16.031 -8.212 2.314 -0.956 C22 KM3 33 KM3 C21 C24 C 0 1 Y N N 24.958 31.539 -16.508 -8.309 3.684 -0.807 C21 KM3 34 KM3 C20 C25 C 0 1 Y N N 24.103 31.268 -17.586 -7.398 4.301 0.037 C20 KM3 35 KM3 C19 C26 C 0 1 Y N N 24.135 29.988 -18.163 -6.457 3.534 0.682 C19 KM3 36 KM3 H1 H1 H 0 1 N N N 16.265 29.701 -6.551 12.133 -1.332 0.401 H1 KM3 37 KM3 H2 H2 H 0 1 N N N 15.463 29.085 -10.522 8.985 0.692 1.954 H2 KM3 38 KM3 H3 H3 H 0 1 N N N 17.874 30.051 -10.247 10.082 2.087 0.064 H3 KM3 39 KM3 H4 H4 H 0 1 N N N 18.383 30.418 -7.958 11.860 0.945 -0.819 H4 KM3 40 KM3 H5 H5 H 0 1 N N N 18.368 28.066 -6.545 10.868 0.067 -2.777 H5 KM3 41 KM3 H6 H6 H 0 1 N N N 19.644 28.370 -7.772 11.190 -1.475 -1.922 H6 KM3 42 KM3 H7 H7 H 0 1 N N N 19.181 28.064 -10.199 8.442 1.624 -1.582 H7 KM3 43 KM3 H8 H8 H 0 1 N N N 17.354 28.014 -12.050 7.406 -0.145 0.691 H8 KM3 44 KM3 H9 H9 H 0 1 N N N 16.560 26.779 -11.016 7.297 1.631 0.701 H9 KM3 45 KM3 H10 H10 H 0 1 N N N 18.621 25.355 -11.167 5.995 1.563 -1.408 H10 KM3 46 KM3 H11 H11 H 0 1 N N N 19.370 26.580 -12.248 6.104 -0.213 -1.418 H11 KM3 47 KM3 H12 H12 H 0 1 N N N 17.551 26.246 -13.914 4.913 -0.299 0.756 H12 KM3 48 KM3 H13 H13 H 0 1 N N N 16.756 25.058 -12.827 4.804 1.477 0.766 H13 KM3 49 KM3 H14 H14 H 0 1 N N N 18.023 23.788 -14.475 3.502 1.409 -1.343 H14 KM3 50 KM3 H15 H15 H 0 1 N N N 18.907 23.671 -12.916 3.611 -0.367 -1.353 H15 KM3 51 KM3 H16 H16 H 0 1 N N N 23.409 24.963 -13.420 -1.271 -0.671 -0.959 H16 KM3 52 KM3 H17 H17 H 0 1 N N N 22.775 26.327 -14.402 -1.380 1.106 -0.948 H17 KM3 53 KM3 H18 H18 H 0 1 N N N 21.043 23.434 -13.517 1.018 0.364 -1.313 H18 KM3 54 KM3 H19 H19 H 0 1 N N N 24.527 24.374 -15.872 -2.461 -0.757 1.215 H19 KM3 55 KM3 H20 H20 H 0 1 N N N 25.353 25.355 -14.614 -2.571 1.020 1.225 H20 KM3 56 KM3 H21 H21 H 0 1 N N N 24.269 27.393 -15.634 -3.873 0.952 -0.884 H21 KM3 57 KM3 H22 H22 H 0 1 N N N 23.711 26.339 -16.977 -3.764 -0.825 -0.894 H22 KM3 58 KM3 H23 H23 H 0 1 N N N 21.848 24.810 -16.051 -0.078 1.174 1.161 H23 KM3 59 KM3 H24 H24 H 0 1 N N N 22.678 23.403 -15.304 0.032 -0.603 1.151 H24 KM3 60 KM3 H25 H25 H 0 1 N N N 25.539 24.788 -17.681 -4.229 -1.812 1.335 H25 KM3 61 KM3 H26 H26 H 0 1 N N N 26.826 25.721 -18.517 -5.610 -1.183 2.211 H26 KM3 62 KM3 H27 H27 H 0 1 N N N 24.334 27.135 -18.511 -5.751 1.045 2.222 H27 KM3 63 KM3 H28 H28 H 0 1 N N N 26.020 27.561 -18.961 -4.455 1.848 1.359 H28 KM3 64 KM3 H29 H29 H 0 1 N N N 29.085 26.193 -14.102 -8.662 -2.293 -1.618 H29 KM3 65 KM3 H30 H30 H 0 1 N N N 29.804 23.946 -14.108 -8.531 -4.735 -1.336 H30 KM3 66 KM3 H31 H31 H 0 1 N N N 28.981 22.403 -15.597 -6.782 -5.655 0.185 H31 KM3 67 KM3 H32 H32 H 0 1 N N N 27.403 22.976 -17.171 -5.278 -4.117 1.343 H32 KM3 68 KM3 H33 H33 H 0 1 N N N 26.490 30.772 -15.202 -8.911 1.811 -1.609 H33 KM3 69 KM3 H34 H34 H 0 1 N N N 24.946 32.512 -16.040 -9.065 4.252 -1.328 H34 KM3 70 KM3 H35 H35 H 0 1 N N N 23.434 32.027 -17.964 -7.427 5.371 0.185 H35 KM3 71 KM3 H36 H36 H 0 1 N N N 23.466 29.751 -18.977 -5.749 4.019 1.338 H36 KM3 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KM3 C19 C18 DOUB Y N 1 KM3 C19 C20 SING Y N 2 KM3 C17 C18 SING N N 3 KM3 C17 N3 SING N N 4 KM3 C18 N5 SING Y N 5 KM3 C20 C21 DOUB Y N 6 KM3 C11 N3 SING N N 7 KM3 C11 C12 SING N N 8 KM3 N3 C23 SING N N 9 KM3 N3 FE1 SING N N 10 KM3 C12 C13 DOUB Y N 11 KM3 C12 N4 SING Y N 12 KM3 N5 C22 DOUB Y N 13 KM3 N5 FE1 SING N N 14 KM3 C21 C22 SING Y N 15 KM3 C13 C14 SING Y N 16 KM3 C23 C26 SING N N 17 KM3 FE1 N4 SING N N 18 KM3 N4 C16 DOUB Y N 19 KM3 C14 C15 DOUB Y N 20 KM3 C26 C25 SING N N 21 KM3 C24 C25 SING N N 22 KM3 C24 N6 SING N N 23 KM3 O1 C01 DOUB N N 24 KM3 C16 C15 SING Y N 25 KM3 C01 N6 SING N N 26 KM3 C01 C2 SING N N 27 KM3 C2 C3 SING N N 28 KM3 C3 C4 SING N N 29 KM3 C4 C5 SING N N 30 KM3 C5 C6 SING N N 31 KM3 C6 C10 SING N N 32 KM3 C6 S1 SING N N 33 KM3 N2 C10 SING N N 34 KM3 N2 C9 SING N N 35 KM3 C10 C8 SING N N 36 KM3 S1 C7 SING N N 37 KM3 C9 O3 DOUB N N 38 KM3 C9 N1 SING N N 39 KM3 C8 C7 SING N N 40 KM3 C8 N1 SING N N 41 KM3 N1 H1 SING N N 42 KM3 N2 H2 SING N N 43 KM3 C10 H3 SING N N 44 KM3 C8 H4 SING N N 45 KM3 C7 H5 SING N N 46 KM3 C7 H6 SING N N 47 KM3 C6 H7 SING N N 48 KM3 C5 H8 SING N N 49 KM3 C5 H9 SING N N 50 KM3 C4 H10 SING N N 51 KM3 C4 H11 SING N N 52 KM3 C3 H12 SING N N 53 KM3 C3 H13 SING N N 54 KM3 C2 H14 SING N N 55 KM3 C2 H15 SING N N 56 KM3 C25 H16 SING N N 57 KM3 C25 H17 SING N N 58 KM3 N6 H18 SING N N 59 KM3 C26 H19 SING N N 60 KM3 C26 H20 SING N N 61 KM3 C23 H21 SING N N 62 KM3 C23 H22 SING N N 63 KM3 C24 H23 SING N N 64 KM3 C24 H24 SING N N 65 KM3 C11 H25 SING N N 66 KM3 C11 H26 SING N N 67 KM3 C17 H27 SING N N 68 KM3 C17 H28 SING N N 69 KM3 C16 H29 SING N N 70 KM3 C15 H30 SING N N 71 KM3 C14 H31 SING N N 72 KM3 C13 H32 SING N N 73 KM3 C22 H33 SING N N 74 KM3 C21 H34 SING N N 75 KM3 C20 H35 SING N N 76 KM3 C19 H36 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KM3 SMILES ACDLabs 12.01 "O=C1NC2C(N1)C(SC2)CCCCC(NCCCC[N+]35[Fe]([n+]4ccccc4C3)[n+]6ccccc6C5)=O" KM3 InChI InChI 1.03 "InChI=1S/C26H36N6O2S.Fe/c33-24(12-2-1-11-23-25-22(19-35-23)30-26(34)31-25)29-15-7-8-16-32(17-20-9-3-5-13-27-20)18-21-10-4-6-14-28-21;/h3-6,9-10,13-14,22-23,25H,1-2,7-8,11-12,15-19H2,(H,29,33)(H2,30,31,34);/q;+3/t22-,23-,25-;/m0./s1" KM3 InChIKey InChI 1.03 BLSJCACNFKSTBA-LTWAPREQSA-N KM3 SMILES_CANONICAL CACTVS 3.385 "O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCCCN3Cc4cccc[n+]4[Fe][n+]5ccccc5C3" KM3 SMILES CACTVS 3.385 "O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCCCN3Cc4cccc[n+]4[Fe][n+]5ccccc5C3" KM3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc[n+]2c(c1)C[N+]3([Fe]2[n+]4ccccc4C3)CCCCNC(=O)CCCC[C@H]5[C@@H]6[C@H](CS5)NC(=O)N6" KM3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc[n+]2c(c1)C[N+]3([Fe]2[n+]4ccccc4C3)CCCCNC(=O)CCCCC5C6C(CS5)NC(=O)N6" # _pdbx_chem_comp_identifier.comp_id KM3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "{N-(4-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}butyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}iron(3+)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KM3 "Create component" 2020-01-31 RCSB KM3 "Initial release" 2021-02-03 RCSB ##