data_KMF # _chem_comp.id KMF _chem_comp.name "N-[2-(4-acetylpiperazin-1-yl)ethyl]naphthalene-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KMF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GB1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KMF N1 N1 N 0 1 N N N N N N 7.347 -3.752 24.105 2.962 0.502 0.502 N1 KMF 1 KMF C4 C1 C 0 1 N N N N N N 6.990 -3.625 25.524 1.655 1.105 0.210 C4 KMF 2 KMF C5 C2 C 0 1 N N N N N N 8.040 -4.231 26.451 0.553 0.067 0.437 C5 KMF 3 KMF C6 C3 C 0 1 N N N N N N 9.963 -2.711 26.384 -1.875 -0.064 0.277 C6 KMF 4 KMF C7 C4 C 0 1 Y N N N N N 11.393 -2.543 25.954 -3.187 0.541 -0.016 C7 KMF 5 KMF C8 C5 C 0 1 Y N N N N N 12.385 -3.020 26.781 -3.294 1.894 -0.312 C8 KMF 6 KMF C10 C6 C 0 1 Y N N N N N 14.088 -2.359 25.243 -5.676 1.725 -0.580 C10 KMF 7 KMF C13 C7 C 0 1 Y N N N N N 12.514 -0.887 22.218 -6.742 -1.754 -0.005 C13 KMF 8 KMF C15 C8 C 0 1 Y N N N N N 10.785 -1.467 23.760 -4.364 -1.641 0.279 C15 KMF 9 KMF C17 C9 C 0 1 N N N N N N 7.269 -2.467 23.391 4.018 1.522 0.526 C17 KMF 10 KMF N N2 N 0 1 N N N N N N 7.140 -3.713 21.275 5.614 -0.286 0.170 N KMF 11 KMF N2 N3 N 0 1 N N N N N N 9.394 -3.873 26.048 -0.751 0.669 0.146 N2 KMF 12 KMF C1 C10 C 0 1 N N N N N N 6.628 -3.640 20.021 6.819 -0.439 -0.415 C1 KMF 13 KMF C18 C11 C 0 1 N N N N N N 7.824 -2.617 21.979 5.327 0.887 1.009 C18 KMF 14 KMF C11 C12 C 0 1 Y N N N N N 13.119 -1.850 24.350 -5.642 0.350 -0.294 C11 KMF 15 KMF O1 O1 O 0 1 N N N N N N 5.814 -4.462 19.633 7.682 0.396 -0.253 O1 KMF 16 KMF C2 C13 C 0 1 N N N N N N 7.060 -4.981 22.018 4.553 -1.287 -0.014 C2 KMF 17 KMF C16 C14 C 0 1 Y N N N N N 11.739 -1.937 24.702 -4.402 -0.271 -0.007 C16 KMF 18 KMF C9 C15 C 0 1 Y N N N N N 13.718 -2.932 26.420 -4.531 2.461 -0.588 C9 KMF 19 KMF C12 C16 C 0 1 Y N N N N N 13.474 -1.306 23.093 -6.815 -0.424 -0.287 C12 KMF 20 KMF C14 C17 C 0 1 Y N N N N N 11.174 -0.968 22.550 -5.521 -2.362 0.278 C14 KMF 21 KMF C C18 C 0 1 N N N N N N 7.131 -2.566 19.107 7.092 -1.649 -1.271 C KMF 22 KMF O O2 O 0 1 N N N N N N 9.371 -1.841 27.019 -1.807 -1.223 0.638 O KMF 23 KMF C3 C19 C 0 1 N N N N N N 6.515 -4.740 23.413 3.275 -0.567 -0.456 C3 KMF 24 KMF H2 H2 H 0 1 N N N N N N 6.881 -2.557 25.766 1.492 1.957 0.869 H2 KMF 25 KMF H3 H3 H 0 1 N N N N N N 6.032 -4.139 25.693 1.632 1.438 -0.828 H3 KMF 26 KMF H4 H4 H 0 1 N N N N N N 7.865 -3.865 27.473 0.715 -0.785 -0.222 H4 KMF 27 KMF H5 H5 H 0 1 N N N N N N 7.941 -5.326 26.432 0.576 -0.266 1.474 H5 KMF 28 KMF H6 H6 H 0 1 N N N N N N 12.119 -3.470 27.726 -2.407 2.510 -0.327 H6 KMF 29 KMF H7 H7 H 0 1 N N N N N N 15.135 -2.292 24.988 -6.620 2.203 -0.801 H7 KMF 30 KMF H8 H8 H 0 1 N N N N N N 12.804 -0.488 21.257 -7.645 -2.347 0.000 H8 KMF 31 KMF H9 H9 H 0 1 N N N N N N 9.734 -1.505 24.005 -3.423 -2.124 0.500 H9 KMF 32 KMF H10 H10 H 0 1 N N N N N N 7.857 -1.713 23.935 4.159 1.925 -0.477 H10 KMF 33 KMF H11 H11 H 0 1 N N N N N N 6.219 -2.144 23.337 3.732 2.326 1.204 H11 KMF 34 KMF H12 H12 H 0 1 N N N N N N 9.919 -4.523 25.498 -0.805 1.593 -0.142 H12 KMF 35 KMF H13 H13 H 0 1 N N N N N N 8.900 -2.837 22.034 6.139 1.609 0.921 H13 KMF 36 KMF H14 H14 H 0 1 N N N N N N 7.669 -1.678 21.427 5.221 0.577 2.049 H14 KMF 37 KMF H15 H15 H 0 1 N N N N N N 6.394 -5.674 21.483 4.853 -2.003 -0.778 H15 KMF 38 KMF H16 H16 H 0 1 N N N N N N 8.065 -5.422 22.092 4.372 -1.807 0.928 H16 KMF 39 KMF H17 H17 H 0 1 N N N N N N 14.476 -3.324 27.082 -4.587 3.516 -0.812 H17 KMF 40 KMF H18 H18 H 0 1 N N N N N N 14.516 -1.221 22.823 -7.769 0.033 -0.505 H18 KMF 41 KMF H19 H19 H 0 1 N N N N N N 10.428 -0.633 21.845 -5.490 -3.418 0.498 H19 KMF 42 KMF H20 H20 H 0 1 N N N N N N 6.657 -2.672 18.120 6.389 -1.671 -2.104 H20 KMF 43 KMF H21 H21 H 0 1 N N N N N N 6.884 -1.580 19.529 8.111 -1.600 -1.656 H21 KMF 44 KMF H22 H22 H 0 1 N N N N N N 8.222 -2.656 19.001 6.973 -2.552 -0.672 H22 KMF 45 KMF H23 H23 H 0 1 N N N N N N 5.484 -4.364 23.343 2.450 -1.278 -0.491 H23 KMF 46 KMF H24 H24 H 0 1 N N N N N N 6.524 -5.684 23.977 3.425 -0.135 -1.446 H24 KMF 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KMF C C1 SING N N 1 KMF O1 C1 DOUB N N 2 KMF C1 N SING N N 3 KMF N C18 SING N N 4 KMF N C2 SING N N 5 KMF C18 C17 SING N N 6 KMF C2 C3 SING N N 7 KMF C13 C14 DOUB Y N 8 KMF C13 C12 SING Y N 9 KMF C14 C15 SING Y N 10 KMF C12 C11 DOUB Y N 11 KMF C17 N1 SING N N 12 KMF C3 N1 SING N N 13 KMF C15 C16 DOUB Y N 14 KMF N1 C4 SING N N 15 KMF C11 C16 SING Y N 16 KMF C11 C10 SING Y N 17 KMF C16 C7 SING Y N 18 KMF C10 C9 DOUB Y N 19 KMF C4 C5 SING N N 20 KMF C7 C6 SING N N 21 KMF C7 C8 DOUB Y N 22 KMF N2 C6 SING N N 23 KMF N2 C5 SING N N 24 KMF C6 O DOUB N N 25 KMF C9 C8 SING Y N 26 KMF C4 H2 SING N N 27 KMF C4 H3 SING N N 28 KMF C5 H4 SING N N 29 KMF C5 H5 SING N N 30 KMF C8 H6 SING N N 31 KMF C10 H7 SING N N 32 KMF C13 H8 SING N N 33 KMF C15 H9 SING N N 34 KMF C17 H10 SING N N 35 KMF C17 H11 SING N N 36 KMF N2 H12 SING N N 37 KMF C18 H13 SING N N 38 KMF C18 H14 SING N N 39 KMF C2 H15 SING N N 40 KMF C2 H16 SING N N 41 KMF C9 H17 SING N N 42 KMF C12 H18 SING N N 43 KMF C14 H19 SING N N 44 KMF C H20 SING N N 45 KMF C H21 SING N N 46 KMF C H22 SING N N 47 KMF C3 H23 SING N N 48 KMF C3 H24 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KMF SMILES ACDLabs 12.01 "CC(=O)N1CCN(CCNC(=O)c2cccc3ccccc32)CC1" KMF InChI InChI 1.06 "InChI=1S/C19H23N3O2/c1-15(23)22-13-11-21(12-14-22)10-9-20-19(24)18-8-4-6-16-5-2-3-7-17(16)18/h2-8H,9-14H2,1H3,(H,20,24)" KMF InChIKey InChI 1.06 FZEKPYMSMRNNKF-UHFFFAOYSA-N KMF SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCN(CCNC(=O)c2cccc3ccccc23)CC1" KMF SMILES CACTVS 3.385 "CC(=O)N1CCN(CCNC(=O)c2cccc3ccccc23)CC1" KMF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)CCNC(=O)c2cccc3c2cccc3" KMF SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)CCNC(=O)c2cccc3c2cccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KMF "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(4-acetylpiperazin-1-yl)ethyl]naphthalene-1-carboxamide" KMF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(4-ethanoylpiperazin-1-yl)ethyl]naphthalene-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KMF "Create component" 2023-08-14 RCSB KMF "Initial release" 2023-11-08 RCSB KMF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KMF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #