data_KNA # _chem_comp.id KNA _chem_comp.name "nonanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-09-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 158.238 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KNA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SZ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KNA C1 C1 C 0 1 N N N N N N 17.452 5.837 13.996 3.924 -0.101 0.001 C1 KNA 1 KNA O1 O1 O 0 1 N N N N N N 18.440 5.649 14.713 5.122 0.504 0.000 O1 KNA 2 KNA C2 C2 C 0 1 N N N N N N 16.063 5.655 14.580 2.663 0.724 -0.000 C2 KNA 3 KNA O2 O2 O 0 1 N N N N N N 17.589 6.216 12.691 3.856 -1.307 -0.002 O2 KNA 4 KNA C3 C3 C 0 1 N N N N N N 15.028 5.076 13.595 1.446 -0.204 0.001 C3 KNA 5 KNA C4 C4 C 0 1 N N N N N N 13.710 4.846 14.357 0.166 0.634 -0.001 C4 KNA 6 KNA C5 C5 C 0 1 N N N N N N 12.844 3.759 13.701 -1.051 -0.294 0.001 C5 KNA 7 KNA C6 C6 C 0 1 N N N N N N 12.410 2.717 14.746 -2.331 0.544 -0.001 C6 KNA 8 KNA C7 C7 C 0 1 N N N N N N 10.878 2.631 14.751 -3.547 -0.384 0.001 C7 KNA 9 KNA C8 C8 C 0 1 N N N N N N 10.289 2.322 16.150 -4.828 0.453 -0.001 C8 KNA 10 KNA C9 C9 C 0 1 N N N N N N 8.856 2.847 16.220 -6.044 -0.475 0.001 C9 KNA 11 KNA HO1 HO1 H 0 1 N N N N N N 19.231 5.809 14.211 5.902 -0.067 0.002 HO1 KNA 12 KNA H2 H2 H 0 1 N N N N N N 16.143 4.962 15.431 2.640 1.355 0.888 H2 KNA 13 KNA H2A H2A H 0 1 N N N N N N 15.703 6.642 14.907 2.640 1.352 -0.891 H2A KNA 14 KNA H3 H3 H 0 1 N N N N N N 14.863 5.783 12.768 1.469 -0.834 -0.888 H3 KNA 15 KNA H3A H3A H 0 1 N N N N N N 15.394 4.123 13.186 1.469 -0.831 0.892 H3A KNA 16 KNA H4 H4 H 0 1 N N N N N N 13.949 4.532 15.384 0.143 1.264 0.888 H4 KNA 17 KNA H4A H4A H 0 1 N N N N N N 13.142 5.788 14.368 0.143 1.261 -0.892 H4A KNA 18 KNA H5 H5 H 0 1 N N N N N N 11.949 4.225 13.263 -1.028 -0.924 -0.888 H5 KNA 19 KNA H5A H5A H 0 1 N N N N N N 13.427 3.259 12.913 -1.028 -0.921 0.892 H5A KNA 20 KNA H6 H6 H 0 1 N N N N N N 12.836 1.736 14.490 -2.354 1.174 0.888 H6 KNA 21 KNA H6A H6A H 0 1 N N N N N N 12.768 3.019 15.741 -2.353 1.171 -0.892 H6A KNA 22 KNA H7 H7 H 0 1 N N N N N N 10.478 3.599 14.415 -3.525 -1.015 -0.888 H7 KNA 23 KNA H7A H7A H 0 1 N N N N N N 10.576 1.826 14.065 -3.525 -1.012 0.892 H7A KNA 24 KNA H8 H8 H 0 1 N N N N N N 10.291 1.235 16.318 -4.851 1.084 0.888 H8 KNA 25 KNA H8A H8A H 0 1 N N N N N N 10.899 2.813 16.923 -4.850 1.081 -0.892 H8A KNA 26 KNA H9 H9 H 0 1 N N N N N N 8.433 2.630 17.212 -6.021 -1.105 -0.888 H9 KNA 27 KNA H9A H9A H 0 1 N N N N N N 8.855 3.934 16.051 -6.022 -1.102 0.891 H9A KNA 28 KNA H9B H9B H 0 1 N N N N N N 8.247 2.355 15.447 -6.956 0.122 -0.001 H9B KNA 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KNA O2 C1 DOUB N N 1 KNA C1 C2 SING N N 2 KNA C1 O1 SING N N 3 KNA O1 HO1 SING N N 4 KNA C3 C2 SING N N 5 KNA C2 H2 SING N N 6 KNA C2 H2A SING N N 7 KNA C3 C4 SING N N 8 KNA C3 H3 SING N N 9 KNA C3 H3A SING N N 10 KNA C5 C4 SING N N 11 KNA C4 H4 SING N N 12 KNA C4 H4A SING N N 13 KNA C5 C6 SING N N 14 KNA C5 H5 SING N N 15 KNA C5 H5A SING N N 16 KNA C6 C7 SING N N 17 KNA C6 H6 SING N N 18 KNA C6 H6A SING N N 19 KNA C7 C8 SING N N 20 KNA C7 H7 SING N N 21 KNA C7 H7A SING N N 22 KNA C8 C9 SING N N 23 KNA C8 H8 SING N N 24 KNA C8 H8A SING N N 25 KNA C9 H9 SING N N 26 KNA C9 H9A SING N N 27 KNA C9 H9B SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KNA SMILES ACDLabs 12.01 "O=C(O)CCCCCCCC" KNA InChI InChI 1.03 "InChI=1S/C9H18O2/c1-2-3-4-5-6-7-8-9(10)11/h2-8H2,1H3,(H,10,11)" KNA InChIKey InChI 1.03 FBUKVWPVBMHYJY-UHFFFAOYSA-N KNA SMILES_CANONICAL CACTVS 3.370 "CCCCCCCCC(O)=O" KNA SMILES CACTVS 3.370 "CCCCCCCCC(O)=O" KNA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CCCCCCCCC(=O)O" KNA SMILES "OpenEye OEToolkits" 1.7.2 "CCCCCCCCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KNA "SYSTEMATIC NAME" ACDLabs 12.01 "nonanoic acid" KNA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "nonanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KNA "Create component" 2011-09-30 RCSB KNA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KNA _pdbx_chem_comp_pcm.modified_residue_id GGL _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom N _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #