data_KNC # _chem_comp.id KNC _chem_comp.name "KANAMYCIN C" _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C18 H36 N4 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-20 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.499 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KNC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1V0C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KNC C2 C2 C 0 1 N N R 14.028 8.551 10.757 3.419 1.956 -0.972 C2 KNC 1 KNC C3 C3 C 0 1 N N R 12.483 8.612 10.572 4.722 1.209 -1.271 C3 KNC 2 KNC C4 C4 C 0 1 N N S 11.784 7.952 11.765 5.374 0.791 0.051 C4 KNC 3 KNC C5 C5 C 0 1 N N R 12.305 8.617 13.032 4.386 -0.062 0.850 C5 KNC 4 KNC C6 C6 C 0 1 N N N 11.883 7.724 14.092 5.007 -0.433 2.198 C6 KNC 5 KNC C7 C7 C 0 1 N N R 15.892 14.230 13.420 -1.158 -2.706 -0.564 C7 KNC 6 KNC C8 C8 C 0 1 N N S 16.815 13.233 12.699 -1.338 -1.241 -0.160 C8 KNC 7 KNC C9 C9 C 0 1 N N S 16.005 12.125 11.990 -0.226 -0.398 -0.788 C9 KNC 8 KNC C10 C10 C 0 1 N N R 14.958 11.451 12.920 1.133 -0.899 -0.294 C10 KNC 9 KNC C11 C11 C 0 1 N N S 14.058 12.482 13.704 1.314 -2.364 -0.698 C11 KNC 10 KNC C12 C12 C 0 1 N N N 14.956 13.515 14.432 0.201 -3.207 -0.071 C12 KNC 11 KNC C13 C13 C 0 1 N N S 18.833 13.682 11.387 -3.677 -0.988 0.303 C13 KNC 12 KNC C14 C14 C 0 1 N N R 19.646 14.950 11.041 -5.015 -0.735 -0.396 C14 KNC 13 KNC C15 C15 C 0 1 N N S 19.148 15.579 9.728 -5.077 0.728 -0.847 C15 KNC 14 KNC C16 C16 C 0 1 N N S 19.161 14.556 8.575 -4.877 1.635 0.371 C16 KNC 15 KNC C17 C17 C 0 1 N N R 18.373 13.283 8.957 -3.544 1.290 1.041 C17 KNC 16 KNC C18 C18 C 0 1 N N N 18.353 12.263 7.765 -3.364 2.150 2.293 C18 KNC 17 KNC N2 N2 N 0 1 N N N 13.088 11.793 14.615 2.618 -2.845 -0.225 N2 KNC 18 KNC N3 N3 N 0 1 N N N 16.698 15.356 14.001 -2.226 -3.515 0.038 N3 KNC 19 KNC N4 N4 N 0 1 N N N 19.956 16.741 9.346 -6.388 1.000 -1.452 N4 KNC 20 KNC C1 C1 C 0 1 N N S 14.477 9.192 12.105 2.506 1.059 -0.132 C1 KNC 21 KNC O5 O5 O 0 1 N N N 13.756 8.615 13.176 3.184 0.681 1.067 O5 KNC 22 KNC O7 O7 O 0 1 N N N 12.021 8.049 9.322 5.610 2.066 -1.992 O7 KNC 23 KNC O8 O8 O 0 1 N N N 10.357 8.131 11.717 6.553 0.031 -0.218 O8 KNC 24 KNC O9 O9 O 0 1 N N N 14.182 10.602 12.099 2.172 -0.112 -0.880 O9 KNC 25 KNC O1 O1 O 0 1 N N N 12.123 8.427 15.309 4.134 -1.324 2.896 O1 KNC 26 KNC O10 O10 O 0 1 N N N 16.891 11.122 11.447 -0.395 0.970 -0.410 O10 KNC 27 KNC O11 O11 O 0 1 N N N 17.449 14.039 11.718 -2.608 -0.773 -0.621 O11 KNC 28 KNC O12 O12 O 0 1 N N N 18.882 12.729 10.255 -3.540 -0.092 1.407 O12 KNC 29 KNC O13 O13 O 0 1 N N N 19.556 15.893 12.106 -5.128 -1.591 -1.535 O13 KNC 30 KNC O14 O14 O 0 1 N N N 18.573 15.179 7.424 -4.861 3.001 -0.048 O14 KNC 31 KNC O15 O15 O 0 1 N N N 18.827 10.966 8.184 -2.079 1.898 2.864 O15 KNC 32 KNC N6 N6 N 0 1 N N N 14.690 9.282 9.685 2.747 2.296 -2.234 N6 KNC 33 KNC H13 H13 H 0 1 N N N 19.536 15.432 12.937 -5.096 -2.534 -1.323 H13 KNC 34 KNC H14 H14 H 0 1 N N N 20.699 14.662 10.905 -5.832 -0.938 0.296 H14 KNC 35 KNC H15 H15 H 0 1 N N N 18.114 15.907 9.910 -4.292 0.918 -1.578 H15 KNC 36 KNC HA HA H 0 1 N N N 19.277 13.197 12.269 -3.644 -2.017 0.663 HA KNC 37 KNC H4N1 1H4N H 0 0 N N N 20.140 17.300 10.155 -6.546 0.408 -2.254 H4N1 KNC 38 KNC H4N2 2H4N H 0 0 N N N 20.821 16.430 8.952 -7.128 0.895 -0.774 H4N2 KNC 39 KNC H16 H16 H 0 1 N N N 20.196 14.251 8.360 -5.692 1.480 1.078 H16 KNC 40 KNC HB HB H 0 1 N N N 18.443 16.104 7.596 -4.738 3.632 0.674 HB KNC 41 KNC H17 H17 H 0 1 N N N 17.316 13.530 9.136 -2.727 1.484 0.346 H17 KNC 42 KNC H181 1H18 H 0 0 N N N 17.321 12.164 7.397 -3.443 3.204 2.024 H181 KNC 43 KNC H182 2H18 H 0 0 N N N 19.015 12.639 6.971 -4.139 1.902 3.019 H182 KNC 44 KNC HC HC H 0 1 N N N 18.931 10.406 7.424 -1.896 2.411 3.663 HC KNC 45 KNC H8 H8 H 0 1 N N N 17.503 12.726 13.391 -1.291 -1.155 0.925 H8 KNC 46 KNC H9 H9 H 0 1 N N N 15.451 12.616 11.176 -0.273 -0.484 -1.873 H9 KNC 47 KNC H7 H7 H 0 1 N N N 15.208 14.689 12.691 -1.205 -2.792 -1.650 H7 KNC 48 KNC H10 H10 H 0 1 N N N 17.086 11.328 10.540 -1.247 1.347 -0.668 H10 KNC 49 KNC HD HD H 0 1 N N N 15.475 10.887 13.711 1.180 -0.813 0.791 HD KNC 50 KNC H3N1 1H3N H 0 0 N N N 16.877 15.174 14.968 -2.129 -4.487 -0.214 H3N1 KNC 51 KNC H3N2 2H3N H 0 0 N N N 17.566 15.433 13.510 -2.244 -3.401 1.040 H3N2 KNC 52 KNC H121 1H12 H 0 0 N N N 15.568 12.995 15.184 0.248 -3.121 1.014 H121 KNC 53 KNC H122 2H12 H 0 0 N N N 14.315 14.266 14.917 0.330 -4.250 -0.359 H122 KNC 54 KNC H11 H11 H 0 1 N N N 13.436 13.036 12.985 1.267 -2.450 -1.784 H11 KNC 55 KNC H2N1 1H2N H 0 0 N N N 13.517 11.640 15.505 2.724 -3.834 -0.397 H2N1 KNC 56 KNC H2N2 2H2N H 0 0 N N N 12.276 12.365 14.731 3.371 -2.322 -0.647 H2N2 KNC 57 KNC H1 H1 H 0 1 N N N 15.557 9.020 12.225 1.594 1.601 0.121 H1 KNC 58 KNC H2 H2 H 0 1 N N N 14.307 7.487 10.746 3.641 2.869 -0.420 H2 KNC 59 KNC H5 H5 H 0 1 N N N 11.948 9.657 13.034 4.156 -0.970 0.294 H5 KNC 60 KNC H6C1 1H6C H 0 0 N N N 10.816 7.475 13.990 5.968 -0.920 2.034 H6C1 KNC 61 KNC H6C2 2H6C H 0 0 N N N 12.433 6.772 14.061 5.154 0.470 2.791 H6C2 KNC 62 KNC H4 H4 H 0 1 N N N 11.994 6.873 11.743 5.636 1.680 0.624 H4 KNC 63 KNC HE HE H 0 1 N N N 12.176 7.808 16.028 4.465 -1.601 3.761 HE KNC 64 KNC HF HF H 0 1 N N N 10.012 8.170 12.601 7.018 -0.267 0.576 HF KNC 65 KNC H3 H3 H 0 1 N N N 12.214 9.678 10.531 4.506 0.323 -1.869 H3 KNC 66 KNC HG HG H 0 1 N N N 11.920 8.742 8.680 6.457 1.657 -2.215 HG KNC 67 KNC H6N1 1H6N H 0 0 N N N 14.842 10.228 9.970 1.883 2.788 -2.062 H6N1 KNC 68 KNC H6N2 2H6N H 0 0 N N N 15.569 8.851 9.481 3.356 2.832 -2.834 H6N2 KNC 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KNC O13 C14 SING N N 1 KNC C14 C15 SING N N 2 KNC C14 C13 SING N N 3 KNC C15 N4 SING N N 4 KNC C15 C16 SING N N 5 KNC C16 O14 SING N N 6 KNC C16 C17 SING N N 7 KNC C17 C18 SING N N 8 KNC C17 O12 SING N N 9 KNC C18 O15 SING N N 10 KNC O12 C13 SING N N 11 KNC C13 O11 SING N N 12 KNC O11 C8 SING N N 13 KNC C8 C9 SING N N 14 KNC C8 C7 SING N N 15 KNC C9 O10 SING N N 16 KNC C9 C10 SING N N 17 KNC C7 N3 SING N N 18 KNC C7 C12 SING N N 19 KNC C12 C11 SING N N 20 KNC C11 N2 SING N N 21 KNC C11 C10 SING N N 22 KNC C10 O9 SING N N 23 KNC O9 C1 SING N N 24 KNC C1 O5 SING N N 25 KNC C1 C2 SING N N 26 KNC O5 C5 SING N N 27 KNC C5 C6 SING N N 28 KNC C5 C4 SING N N 29 KNC C6 O1 SING N N 30 KNC C4 O8 SING N N 31 KNC C4 C3 SING N N 32 KNC C3 O7 SING N N 33 KNC C3 C2 SING N N 34 KNC C2 N6 SING N N 35 KNC O13 H13 SING N N 36 KNC C14 H14 SING N N 37 KNC C15 H15 SING N N 38 KNC C13 HA SING N N 39 KNC N4 H4N1 SING N N 40 KNC N4 H4N2 SING N N 41 KNC C16 H16 SING N N 42 KNC O14 HB SING N N 43 KNC C17 H17 SING N N 44 KNC C18 H181 SING N N 45 KNC C18 H182 SING N N 46 KNC O15 HC SING N N 47 KNC C8 H8 SING N N 48 KNC C9 H9 SING N N 49 KNC C7 H7 SING N N 50 KNC O10 H10 SING N N 51 KNC C10 HD SING N N 52 KNC N3 H3N1 SING N N 53 KNC N3 H3N2 SING N N 54 KNC C12 H121 SING N N 55 KNC C12 H122 SING N N 56 KNC C11 H11 SING N N 57 KNC N2 H2N1 SING N N 58 KNC N2 H2N2 SING N N 59 KNC C1 H1 SING N N 60 KNC C2 H2 SING N N 61 KNC C5 H5 SING N N 62 KNC C6 H6C1 SING N N 63 KNC C6 H6C2 SING N N 64 KNC C4 H4 SING N N 65 KNC O1 HE SING N N 66 KNC O8 HF SING N N 67 KNC C3 H3 SING N N 68 KNC O7 HG SING N N 69 KNC N6 H6N1 SING N N 70 KNC N6 H6N2 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KNC SMILES ACDLabs 10.04 "O(C2C(O)C(OC1OC(CO)C(O)C(O)C1N)C(N)CC2N)C3OC(C(O)C(N)C3O)CO" KNC SMILES_CANONICAL CACTVS 3.341 "N[C@H]1C[C@@H](N)[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](N)[C@H]2O)[C@@H](O)[C@@H]1O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3N" KNC SMILES CACTVS 3.341 "N[CH]1C[CH](N)[CH](O[CH]2O[CH](CO)[CH](O)[CH](N)[CH]2O)[CH](O)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3N" KNC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1N)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)N)O)O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)N)N" KNC SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CO)O)N)O)O)OC3C(C(C(C(O3)CO)O)O)N)N" KNC InChI InChI 1.03 "InChI=1S/C18H36N4O11/c19-4-1-5(20)16(33-18-13(28)8(21)10(25)6(2-23)31-18)14(29)15(4)32-17-9(22)12(27)11(26)7(3-24)30-17/h4-18,23-29H,1-3,19-22H2/t4-,5+,6+,7+,8-,9+,10+,11+,12+,13+,14-,15+,16-,17+,18+/m0/s1" KNC InChIKey InChI 1.03 WZDRWYJKESFZMB-FQSMHNGLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KNC "SYSTEMATIC NAME" ACDLabs 10.04 "(1R,2S,3S,4R,6S)-4,6-diamino-3-[(3-amino-3-deoxy-alpha-D-glucopyranosyl)oxy]-2-hydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside" KNC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4R,5R,6S)-5-amino-6-[(1R,2S,3S,4R,6S)-4,6-diamino-3-[(2S,3R,4S,5S,6R)-4-amino-3,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-hydroxy-cyclohexyl]oxy-2-(hydroxymethyl)oxane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KNC "Create component" 2008-03-20 EBI KNC "Modify descriptor" 2011-06-04 RCSB #