data_KNR # _chem_comp.id KNR _chem_comp.name "1-[(8~{R},15~{S},18~{S})-18-(4-azanylbutyl)-15-butyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(26),22,24-trien-8-yl]guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H49 N9 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-31 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 615.767 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KNR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZYS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KNR N1 N1 N 0 1 N N N 8.867 -11.304 4.849 6.463 -4.702 1.161 N1 KNR 1 KNR C7 C1 C 0 1 N N N 2.305 -15.052 4.205 -2.748 -2.688 0.537 C7 KNR 2 KNR C8 C2 C 0 1 N N S 1.679 -14.003 3.281 -4.021 -1.890 0.645 C8 KNR 3 KNR N2 N2 N 0 1 N N N 9.866 -11.162 6.983 5.172 -2.971 2.009 N2 KNR 4 KNR C9 C3 C 0 1 N N N 1.229 -14.650 1.968 -5.135 -2.599 -0.128 C9 KNR 5 KNR O1 O1 O 0 1 N N N 10.178 -16.589 2.588 4.927 1.395 1.012 O1 KNR 6 KNR C1 C4 C 0 1 N N R 7.109 -13.334 5.866 3.260 -3.372 0.009 C1 KNR 7 KNR C5 C5 C 0 1 N N N 3.852 -15.072 7.147 -0.282 -3.672 -0.465 C5 KNR 8 KNR C6 C6 C 0 1 N N N 2.658 -15.765 6.524 -1.488 -4.590 -0.264 C6 KNR 9 KNR N3 N3 N 0 1 N N N 2.028 -14.934 5.504 -2.724 -3.783 -0.272 N3 KNR 10 KNR C4 C7 C 0 1 N N N 4.919 -14.656 6.148 0.945 -4.291 0.207 C4 KNR 11 KNR O4 O2 O 0 1 N N N 3.051 -15.921 3.753 -1.760 -2.357 1.157 O4 KNR 12 KNR C3 C8 C 0 1 N N N 6.064 -13.925 6.814 2.158 -4.152 -0.713 C3 KNR 13 KNR O3 O3 O 0 1 N N N 1.678 -11.334 4.273 -3.852 0.286 2.152 O3 KNR 14 KNR C2 C9 C 0 1 N N N 8.984 -11.646 6.182 5.387 -3.969 1.089 C2 KNR 15 KNR N4 N4 N 0 1 N N N 2.648 -12.949 3.014 -3.808 -0.545 0.076 N4 KNR 16 KNR N N5 N 0 1 N N N 8.066 -12.580 6.661 4.469 -4.195 0.091 N KNR 17 KNR C C10 C 0 1 N N N 7.751 -14.455 5.038 3.561 -2.110 -0.757 C KNR 18 KNR O O4 O 0 1 N N N 7.265 -14.805 3.959 3.382 -2.059 -1.956 O KNR 19 KNR C10 C11 C 0 1 N N N 0.399 -13.721 1.090 -6.456 -1.856 0.084 C10 KNR 20 KNR C11 C12 C 0 1 N N N 0.057 -14.364 -0.267 -7.569 -2.566 -0.688 C11 KNR 21 KNR C12 C13 C 0 1 N N N -0.741 -13.458 -1.177 -8.890 -1.823 -0.477 C12 KNR 22 KNR C13 C14 C 0 1 N N N 2.536 -11.693 3.467 -3.764 0.490 0.960 C13 KNR 23 KNR C14 C15 C 0 1 N N S 3.544 -10.680 2.924 -3.604 1.893 0.435 C14 KNR 24 KNR C15 C16 C 0 1 N N N 2.817 -9.517 2.251 -2.935 1.853 -0.940 C15 KNR 25 KNR C16 C17 C 0 1 N N N 3.775 -8.383 1.893 -1.492 1.366 -0.791 C16 KNR 26 KNR C17 C18 C 0 1 N N N 3.102 -7.086 1.471 -0.784 1.447 -2.145 C17 KNR 27 KNR C18 C19 C 0 1 N N N 2.287 -7.228 0.203 0.659 0.961 -1.995 C18 KNR 28 KNR C19 C20 C 0 1 N N N 5.793 -11.430 2.280 -1.984 3.630 0.804 C19 KNR 29 KNR C20 C21 C 0 1 N N N 6.633 -11.882 1.099 -1.085 4.460 1.684 C20 KNR 30 KNR C21 C22 C 0 1 Y N N 8.123 -11.727 1.292 0.144 4.858 0.907 C21 KNR 31 KNR C22 C23 C 0 1 Y N N 8.899 -12.826 1.642 1.306 4.120 1.030 C22 KNR 32 KNR C23 C24 C 0 1 Y N N 10.281 -12.725 1.818 2.434 4.482 0.318 C23 KNR 33 KNR C24 C25 C 0 1 N N N 11.080 -13.938 2.199 3.699 3.676 0.455 C24 KNR 34 KNR C25 C26 C 0 1 N N N 10.079 -15.768 3.501 4.309 1.392 -0.032 C25 KNR 35 KNR C26 C27 C 0 1 N N N 9.442 -16.149 4.827 4.303 0.170 -0.912 C26 KNR 36 KNR C27 C28 C 0 1 Y N N 10.870 -11.480 1.645 2.400 5.583 -0.517 C27 KNR 37 KNR C28 C29 C 0 1 Y N N 10.116 -10.371 1.304 1.237 6.321 -0.641 C28 KNR 38 KNR C29 C30 C 0 1 Y N N 8.747 -10.501 1.125 0.110 5.959 0.072 C29 KNR 39 KNR N5 N6 N 0 1 N N N 1.803 -5.910 -0.273 1.339 1.039 -3.295 N5 KNR 40 KNR N6 N7 N 0 1 N N N 4.499 -11.262 1.998 -2.762 2.664 1.377 N6 KNR 41 KNR N7 N8 N 0 1 N N N 10.544 -14.524 3.419 3.612 2.493 -0.424 N7 KNR 42 KNR N8 N9 N 0 1 N N N 8.838 -15.039 5.537 4.041 -1.025 -0.080 N8 KNR 43 KNR O2 O5 O 0 1 N N N 6.265 -11.253 3.404 -2.017 3.817 -0.394 O2 KNR 44 KNR H1 H1 H 0 1 N N N 9.553 -10.630 4.574 7.111 -4.543 1.865 H1 KNR 45 KNR H2 H2 H 0 1 N N N 0.798 -13.576 3.782 -4.306 -1.799 1.693 H2 KNR 46 KNR H3 H3 H 0 1 N N N 9.889 -11.456 7.939 5.820 -2.812 2.713 H3 KNR 47 KNR H4 H4 H 0 1 N N N 10.529 -10.492 6.650 4.371 -2.426 1.955 H4 KNR 48 KNR H5 H5 H 0 1 N N N 0.625 -15.538 2.206 -4.891 -2.610 -1.190 H5 KNR 49 KNR H6 H6 H 0 1 N N N 2.123 -14.955 1.405 -5.232 -3.623 0.234 H6 KNR 50 KNR H7 H7 H 0 1 N N N 6.596 -12.649 5.175 2.925 -3.116 1.014 H7 KNR 51 KNR H8 H8 H 0 1 N N N 4.309 -15.759 7.875 -0.091 -3.552 -1.532 H8 KNR 52 KNR H9 H9 H 0 1 N N N 3.496 -14.171 7.667 -0.489 -2.698 -0.021 H9 KNR 53 KNR H10 H10 H 0 1 N N N 1.921 -15.984 7.311 -1.527 -5.323 -1.070 H10 KNR 54 KNR H11 H11 H 0 1 N N N 2.992 -16.706 6.062 -1.397 -5.106 0.692 H11 KNR 55 KNR H12 H12 H 0 1 N N N 1.360 -14.247 5.791 -3.483 -4.022 -0.827 H12 KNR 56 KNR H13 H13 H 0 1 N N N 4.464 -13.994 5.397 1.142 -3.776 1.147 H13 KNR 57 KNR H14 H14 H 0 1 N N N 5.312 -15.556 5.653 0.758 -5.346 0.403 H14 KNR 58 KNR H15 H15 H 0 1 N N N 6.575 -14.633 7.482 1.869 -3.618 -1.618 H15 KNR 59 KNR H16 H16 H 0 1 N N N 5.641 -13.101 7.407 2.529 -5.142 -0.978 H16 KNR 60 KNR H17 H17 H 0 1 N N N 3.447 -13.177 2.458 -3.704 -0.406 -0.878 H17 KNR 61 KNR H18 H18 H 0 1 N N N 8.065 -12.748 7.647 4.621 -4.899 -0.558 H18 KNR 62 KNR H19 H19 H 0 1 N N N 0.969 -12.797 0.912 -6.700 -1.845 1.146 H19 KNR 63 KNR H20 H20 H 0 1 N N N -0.537 -13.479 1.614 -6.358 -0.832 -0.277 H20 KNR 64 KNR H21 H21 H 0 1 N N N -0.529 -15.277 -0.083 -7.325 -2.577 -1.750 H21 KNR 65 KNR H22 H22 H 0 1 N N N 0.997 -14.628 -0.774 -7.667 -3.590 -0.327 H22 KNR 66 KNR H23 H23 H 0 1 N N N -0.949 -13.979 -2.123 -9.684 -2.328 -1.027 H23 KNR 67 KNR H24 H24 H 0 1 N N N -1.690 -13.192 -0.689 -9.135 -1.812 0.586 H24 KNR 68 KNR H25 H25 H 0 1 N N N -0.165 -12.543 -1.381 -8.793 -0.799 -0.838 H25 KNR 69 KNR H26 H26 H 0 1 N N N 4.097 -10.272 3.783 -4.583 2.365 0.351 H26 KNR 70 KNR H27 H27 H 0 1 N N N 2.049 -9.131 2.938 -3.483 1.172 -1.591 H27 KNR 71 KNR H28 H28 H 0 1 N N N 2.337 -9.881 1.331 -2.938 2.852 -1.375 H28 KNR 72 KNR H29 H29 H 0 1 N N N 4.412 -8.723 1.063 -0.970 1.994 -0.069 H29 KNR 73 KNR H30 H30 H 0 1 N N N 4.400 -8.173 2.773 -1.491 0.333 -0.442 H30 KNR 74 KNR H31 H31 H 0 1 N N N 3.879 -6.326 1.305 -1.306 0.820 -2.866 H31 KNR 75 KNR H32 H32 H 0 1 N N N 2.435 -6.757 2.282 -0.785 2.480 -2.494 H32 KNR 76 KNR H33 H33 H 0 1 N N N 1.422 -7.877 0.403 1.181 1.589 -1.274 H33 KNR 77 KNR H34 H34 H 0 1 N N N 2.914 -7.683 -0.578 0.660 -0.072 -1.646 H34 KNR 78 KNR H35 H35 H 0 1 N N N 6.337 -11.290 0.221 -1.617 5.355 2.007 H35 KNR 79 KNR H36 H36 H 0 1 N N N 6.420 -12.945 0.913 -0.790 3.877 2.556 H36 KNR 80 KNR H37 H37 H 0 1 N N N 8.420 -13.784 1.782 1.332 3.260 1.683 H37 KNR 81 KNR H38 H38 H 0 1 N N N 11.029 -14.678 1.387 4.554 4.286 0.162 H38 KNR 82 KNR H39 H39 H 0 1 N N N 12.128 -13.647 2.364 3.816 3.354 1.490 H39 KNR 83 KNR H40 H40 H 0 1 N N N 8.662 -16.899 4.632 3.522 0.267 -1.666 H40 KNR 84 KNR H41 H41 H 0 1 N N N 10.220 -16.587 5.470 5.272 0.068 -1.401 H41 KNR 85 KNR H42 H42 H 0 1 N N N 11.936 -11.375 1.779 3.281 5.867 -1.074 H42 KNR 86 KNR H43 H43 H 0 1 N N N 10.591 -9.409 1.178 1.210 7.181 -1.294 H43 KNR 87 KNR H44 H44 H 0 1 N N N 8.160 -9.636 0.852 -0.798 6.536 -0.023 H44 KNR 88 KNR H45 H45 H 0 1 N N N 1.269 -6.033 -1.110 2.294 0.722 -3.223 H45 KNR 89 KNR H46 H46 H 0 1 N N N 1.228 -5.492 0.431 0.837 0.517 -3.998 H46 KNR 90 KNR H48 H48 H 0 1 N N N 4.169 -11.553 1.100 -2.763 2.496 2.332 H48 KNR 91 KNR H49 H49 H 0 1 N N N 10.524 -13.959 4.244 3.085 2.500 -1.238 H49 KNR 92 KNR H50 H50 H 0 1 N N N 9.235 -14.714 6.395 4.197 -1.037 0.878 H50 KNR 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KNR C12 C11 SING N N 1 KNR N5 C18 SING N N 2 KNR C11 C10 SING N N 3 KNR C18 C17 SING N N 4 KNR C10 C9 SING N N 5 KNR C20 C21 SING N N 6 KNR C20 C19 SING N N 7 KNR C29 C21 DOUB Y N 8 KNR C29 C28 SING Y N 9 KNR C21 C22 SING Y N 10 KNR C28 C27 DOUB Y N 11 KNR C17 C16 SING N N 12 KNR C22 C23 DOUB Y N 13 KNR C27 C23 SING Y N 14 KNR C23 C24 SING N N 15 KNR C16 C15 SING N N 16 KNR C9 C8 SING N N 17 KNR N6 C19 SING N N 18 KNR N6 C14 SING N N 19 KNR C24 N7 SING N N 20 KNR C15 C14 SING N N 21 KNR C19 O2 DOUB N N 22 KNR O1 C25 DOUB N N 23 KNR C14 C13 SING N N 24 KNR N4 C8 SING N N 25 KNR N4 C13 SING N N 26 KNR C8 C7 SING N N 27 KNR N7 C25 SING N N 28 KNR C13 O3 DOUB N N 29 KNR C25 C26 SING N N 30 KNR O4 C7 DOUB N N 31 KNR O C DOUB N N 32 KNR C7 N3 SING N N 33 KNR C26 N8 SING N N 34 KNR N1 C2 DOUB N N 35 KNR C N8 SING N N 36 KNR C C1 SING N N 37 KNR N3 C6 SING N N 38 KNR C1 N SING N N 39 KNR C1 C3 SING N N 40 KNR C4 C3 SING N N 41 KNR C4 C5 SING N N 42 KNR C2 N SING N N 43 KNR C2 N2 SING N N 44 KNR C6 C5 SING N N 45 KNR N1 H1 SING N N 46 KNR C8 H2 SING N N 47 KNR N2 H3 SING N N 48 KNR N2 H4 SING N N 49 KNR C9 H5 SING N N 50 KNR C9 H6 SING N N 51 KNR C1 H7 SING N N 52 KNR C5 H8 SING N N 53 KNR C5 H9 SING N N 54 KNR C6 H10 SING N N 55 KNR C6 H11 SING N N 56 KNR N3 H12 SING N N 57 KNR C4 H13 SING N N 58 KNR C4 H14 SING N N 59 KNR C3 H15 SING N N 60 KNR C3 H16 SING N N 61 KNR N4 H17 SING N N 62 KNR N H18 SING N N 63 KNR C10 H19 SING N N 64 KNR C10 H20 SING N N 65 KNR C11 H21 SING N N 66 KNR C11 H22 SING N N 67 KNR C12 H23 SING N N 68 KNR C12 H24 SING N N 69 KNR C12 H25 SING N N 70 KNR C14 H26 SING N N 71 KNR C15 H27 SING N N 72 KNR C15 H28 SING N N 73 KNR C16 H29 SING N N 74 KNR C16 H30 SING N N 75 KNR C17 H31 SING N N 76 KNR C17 H32 SING N N 77 KNR C18 H33 SING N N 78 KNR C18 H34 SING N N 79 KNR C20 H35 SING N N 80 KNR C20 H36 SING N N 81 KNR C22 H37 SING N N 82 KNR C24 H38 SING N N 83 KNR C24 H39 SING N N 84 KNR C26 H40 SING N N 85 KNR C26 H41 SING N N 86 KNR C27 H42 SING N N 87 KNR C28 H43 SING N N 88 KNR C29 H44 SING N N 89 KNR N5 H45 SING N N 90 KNR N5 H46 SING N N 91 KNR N6 H48 SING N N 92 KNR N7 H49 SING N N 93 KNR N8 H50 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KNR InChI InChI 1.06 "InChI=1S/C30H49N9O5/c1-2-3-11-22-27(42)34-15-7-5-13-23(39-30(32)33)28(43)36-19-26(41)35-18-21-10-8-9-20(16-21)17-25(40)37-24(29(44)38-22)12-4-6-14-31/h8-10,16,22-24H,2-7,11-15,17-19,31H2,1H3,(H,34,42)(H,35,41)(H,36,43)(H,37,40)(H,38,44)(H4,32,33,39)/t22-,23+,24-/m0/s1" KNR InChIKey InChI 1.06 FYKKPXKNPQGZNM-VXNXHJTFSA-N KNR SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H]1NC(=O)[C@H](CCCCN)NC(=O)Cc2cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC1=O)NC(N)=N)c2" KNR SMILES CACTVS 3.385 "CCCC[CH]1NC(=O)[CH](CCCCN)NC(=O)Cc2cccc(CNC(=O)CNC(=O)[CH](CCCCNC1=O)NC(N)=N)c2" KNR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)CCCCN)CCCC" KNR SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC1C(=O)NCCCCC(C(=O)NCC(=O)NCc2cccc(c2)CC(=O)NC(C(=O)N1)CCCCN)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id KNR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(8~{R},15~{S},18~{S})-18-(4-azanylbutyl)-15-butyl-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(26),22,24-trien-8-yl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KNR "Create component" 2022-05-31 PDBE KNR "Initial release" 2022-07-13 RCSB KNR "Modify descriptor" 2022-08-22 RCSB #