data_KNX # _chem_comp.id KNX _chem_comp.name "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H36 Cl2 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-08 _chem_comp.pdbx_modified_date 2023-02-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 623.531 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KNX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KNX N1 N1 N 0 1 Y N N 30.818 -45.077 -35.369 -7.682 -1.488 1.806 N1 KNX 1 KNX N3 N2 N 0 1 Y N N 32.634 -42.573 -37.153 -6.814 1.645 0.595 N3 KNX 2 KNX C4 C1 C 0 1 Y N N 31.422 -44.605 -38.112 -8.771 0.984 2.085 C4 KNX 3 KNX C5 C2 C 0 1 Y N N 32.744 -42.191 -35.905 -5.848 0.960 0.055 C5 KNX 4 KNX C6 C3 C 0 1 N N R 32.035 -42.892 -33.614 -5.071 -1.440 -0.021 C6 KNX 5 KNX C7 C4 C 0 1 N N R 31.092 -41.685 -31.938 -3.117 -1.915 -1.127 C7 KNX 6 KNX C8 C5 C 0 1 N N S 32.604 -41.514 -31.756 -4.222 -2.359 -2.110 C8 KNX 7 KNX C10 C6 C 0 1 N N N 30.246 -40.467 -31.630 -1.943 -1.296 -1.889 C10 KNX 8 KNX C13 C7 C 0 1 N N S 28.873 -41.676 -27.231 -1.670 2.594 -0.106 C13 KNX 9 KNX C15 C8 C 0 1 N N N 29.760 -38.777 -29.943 0.417 -0.800 -1.670 C15 KNX 10 KNX C17 C9 C 0 1 N N N 28.993 -36.494 -30.630 2.892 -0.581 -1.413 C17 KNX 11 KNX C20 C10 C 0 1 Y N N 26.968 -34.917 -27.702 6.527 -0.579 -0.217 C20 KNX 12 KNX C21 C11 C 0 1 Y N N 25.935 -33.986 -27.586 7.579 0.308 -0.151 C21 KNX 13 KNX C22 C12 C 0 1 N N N 25.682 -32.990 -28.688 7.624 1.553 -0.998 C22 KNX 14 KNX C24 C13 C 0 1 Y N N 27.197 -35.802 -26.648 6.523 -1.707 0.590 C24 KNX 15 KNX C26 C14 C 0 1 Y N N 25.400 -34.838 -25.396 8.628 -1.062 1.522 C26 KNX 16 KNX C1 C15 C 0 1 Y N N 31.885 -43.739 -37.104 -7.610 0.815 1.310 C1 KNX 17 KNX C11 C16 C 0 1 N N N 30.313 -41.006 -29.265 -1.169 0.146 -0.104 C11 KNX 18 KNX C12 C17 C 0 1 N N N 29.003 -40.849 -28.516 -1.468 1.360 -0.987 C12 KNX 19 KNX C14 C18 C 0 1 N N N 28.069 -40.849 -26.235 -1.957 3.791 -0.975 C14 KNX 20 KNX C16 C19 C 0 1 N N N 29.315 -37.906 -31.102 1.584 -0.899 -0.686 C16 KNX 21 KNX C18 C20 C 0 1 N N N 28.034 -36.397 -29.470 4.059 -0.680 -0.429 C18 KNX 22 KNX C19 C21 C 0 1 N N R 27.826 -34.959 -28.955 5.368 -0.362 -1.156 C19 KNX 23 KNX C2 C22 C 0 1 Y N N 31.545 -44.033 -35.799 -7.076 -0.478 1.189 C2 KNX 24 KNX C23 C23 C 0 1 N N N 27.278 -34.071 -30.064 5.345 1.091 -1.630 C23 KNX 25 KNX C25 C24 C 0 1 Y N N 26.419 -35.767 -25.500 7.569 -1.949 1.457 C25 KNX 26 KNX C27 C25 C 0 1 Y N N 25.165 -33.954 -26.423 8.633 0.064 0.720 C27 KNX 27 KNX C3 C26 C 0 1 Y N N 30.445 -45.832 -36.401 -8.767 -1.283 2.522 C3 KNX 28 KNX C9 C27 C 0 1 N N R 33.185 -42.055 -33.068 -5.538 -2.039 -1.366 C9 KNX 29 KNX N2 N3 N 0 1 Y N N 30.685 -45.671 -37.713 -9.306 -0.085 2.665 N2 KNX 30 KNX N4 N4 N 0 1 Y N N 32.100 -43.038 -35.041 -5.966 -0.356 0.392 N4 KNX 31 KNX N5 N5 N 0 1 N N N 30.543 -39.969 -30.286 -0.848 -1.009 -0.953 N5 KNX 32 KNX N6 N6 N 0 1 N N N 26.854 -32.775 -29.525 6.687 1.444 -2.120 N6 KNX 33 KNX N7 N7 N 0 1 N N N 31.677 -44.431 -39.412 -9.343 2.234 2.241 N7 KNX 34 KNX N8 N8 N 0 1 N N N 28.117 -42.932 -27.487 -2.801 2.366 0.803 N8 KNX 35 KNX O1 O1 O 0 1 N N N 30.902 -42.125 -33.300 -3.747 -0.926 -0.285 O1 KNX 36 KNX O2 O2 O 0 1 N N N 33.028 -42.292 -30.643 -4.124 -3.760 -2.374 O2 KNX 37 KNX O3 O3 O 0 1 N N N 34.383 -42.782 -32.921 -6.292 -3.233 -1.147 O3 KNX 38 KNX O4 O4 O 0 1 N N N 28.664 -39.915 -25.648 -0.950 4.433 -1.587 O4 KNX 39 KNX O5 O5 O 0 1 N N N 26.870 -41.156 -26.102 -3.094 4.171 -1.123 O5 KNX 40 KNX CL1 CL1 CL 0 0 N N N 23.884 -32.803 -26.273 9.962 1.177 0.801 CL1 KNX 41 KNX CL2 CL2 CL 0 0 N N N 24.400 -34.775 -23.974 9.948 -1.361 2.609 CL2 KNX 42 KNX H1 H1 H 0 1 N N N 33.282 -41.308 -35.592 -5.069 1.372 -0.568 H1 KNX 43 KNX H2 H2 H 0 1 N N N 32.014 -43.872 -33.114 -5.032 -2.213 0.746 H2 KNX 44 KNX H3 H3 H 0 1 N N N 30.770 -42.492 -31.263 -2.776 -2.762 -0.531 H3 KNX 45 KNX H4 H4 H 0 1 N N N 32.857 -40.450 -31.636 -4.158 -1.791 -3.038 H4 KNX 46 KNX H5 H5 H 0 1 N N N 30.464 -39.679 -32.365 -1.597 -1.993 -2.651 H5 KNX 47 KNX H6 H6 H 0 1 N N N 29.182 -40.740 -31.689 -2.267 -0.370 -2.364 H6 KNX 48 KNX H7 H7 H 0 1 N N N 29.870 -41.898 -26.823 -0.767 2.777 0.477 H7 KNX 49 KNX H8 H8 H 0 1 N N N 30.373 -38.156 -29.273 0.413 0.187 -2.132 H8 KNX 50 KNX H9 H9 H 0 1 N N N 28.858 -39.111 -29.410 0.527 -1.562 -2.442 H9 KNX 51 KNX H10 H10 H 0 1 N N N 29.936 -36.014 -30.330 3.039 -1.294 -2.224 H10 KNX 52 KNX H11 H11 H 0 1 N N N 28.556 -35.946 -31.477 2.845 0.428 -1.821 H11 KNX 53 KNX H12 H12 H 0 1 N N N 25.390 -32.030 -28.236 7.356 2.415 -0.387 H12 KNX 54 KNX H13 H13 H 0 1 N N N 24.862 -33.363 -29.319 8.633 1.688 -1.387 H13 KNX 55 KNX H14 H14 H 0 1 N N N 27.994 -36.527 -26.727 5.695 -2.400 0.539 H14 KNX 56 KNX H15 H15 H 0 1 N N N 30.313 -41.987 -29.762 -0.322 0.368 0.544 H15 KNX 57 KNX H16 H16 H 0 1 N N N 31.136 -40.964 -28.536 -2.043 -0.083 0.506 H16 KNX 58 KNX H17 H17 H 0 1 N N N 28.891 -39.788 -28.249 -2.372 1.174 -1.566 H17 KNX 59 KNX H18 H18 H 0 1 N N N 28.188 -41.145 -29.193 -0.631 1.530 -1.665 H18 KNX 60 KNX H19 H19 H 0 1 N N N 28.417 -38.346 -31.559 1.436 -0.185 0.125 H19 KNX 61 KNX H20 H20 H 0 1 N N N 30.122 -37.861 -31.849 1.631 -1.908 -0.278 H20 KNX 62 KNX H21 H21 H 0 1 N N N 27.060 -36.795 -29.791 3.912 0.034 0.382 H21 KNX 63 KNX H22 H22 H 0 1 N N N 28.426 -37.008 -28.644 4.106 -1.689 -0.020 H22 KNX 64 KNX H23 H23 H 0 1 N N N 28.818 -34.568 -28.685 5.472 -1.021 -2.017 H23 KNX 65 KNX H24 H24 H 0 1 N N N 26.415 -34.568 -30.532 4.620 1.201 -2.437 H24 KNX 66 KNX H25 H25 H 0 1 N N N 28.062 -33.910 -30.819 5.075 1.743 -0.800 H25 KNX 67 KNX H26 H26 H 0 1 N N N 26.608 -36.460 -24.694 7.560 -2.829 2.083 H26 KNX 68 KNX H27 H27 H 0 1 N N N 29.862 -46.704 -36.145 -9.234 -2.125 3.011 H27 KNX 69 KNX H28 H28 H 0 1 N N N 33.346 -41.205 -33.748 -6.128 -1.312 -1.924 H28 KNX 70 KNX H30 H30 H 0 1 N N N 27.592 -32.378 -28.979 7.012 0.772 -2.799 H30 KNX 71 KNX H32 H32 H 0 1 N N N 31.254 -45.169 -39.937 -10.144 2.338 2.778 H32 KNX 72 KNX H33 H33 H 0 1 N N N 31.303 -43.553 -39.710 -8.943 3.007 1.812 H33 KNX 73 KNX H34 H34 H 0 1 N N N 28.043 -43.456 -26.639 -2.960 3.171 1.392 H34 KNX 74 KNX H35 H35 H 0 1 N N N 27.201 -42.708 -27.821 -3.635 2.124 0.290 H35 KNX 75 KNX H37 H37 H 0 1 N N N 32.654 -41.935 -29.846 -4.795 -4.093 -2.986 H37 KNX 76 KNX H38 H38 H 0 1 N N N 35.061 -42.211 -32.579 -6.610 -3.651 -1.959 H38 KNX 77 KNX H39 H39 H 0 1 N N N 28.057 -39.464 -25.074 -1.183 5.196 -2.134 H39 KNX 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KNX N7 C4 SING N N 1 KNX C4 N2 DOUB Y N 2 KNX C4 C1 SING Y N 3 KNX N2 C3 SING Y N 4 KNX N3 C1 SING Y N 5 KNX N3 C5 DOUB Y N 6 KNX C1 C2 DOUB Y N 7 KNX C3 N1 DOUB Y N 8 KNX C5 N4 SING Y N 9 KNX C2 N1 SING Y N 10 KNX C2 N4 SING Y N 11 KNX N4 C6 SING N N 12 KNX C6 O1 SING N N 13 KNX C6 C9 SING N N 14 KNX O1 C7 SING N N 15 KNX C9 O3 SING N N 16 KNX C9 C8 SING N N 17 KNX C7 C8 SING N N 18 KNX C7 C10 SING N N 19 KNX C8 O2 SING N N 20 KNX C10 N5 SING N N 21 KNX C16 C17 SING N N 22 KNX C16 C15 SING N N 23 KNX C17 C18 SING N N 24 KNX N5 C15 SING N N 25 KNX N5 C11 SING N N 26 KNX C23 N6 SING N N 27 KNX C23 C19 SING N N 28 KNX N6 C22 SING N N 29 KNX C18 C19 SING N N 30 KNX C11 C12 SING N N 31 KNX C19 C20 SING N N 32 KNX C22 C21 SING N N 33 KNX C12 C13 SING N N 34 KNX C20 C21 DOUB Y N 35 KNX C20 C24 SING Y N 36 KNX C21 C27 SING Y N 37 KNX N8 C13 SING N N 38 KNX C13 C14 SING N N 39 KNX C24 C25 DOUB Y N 40 KNX C27 CL1 SING N N 41 KNX C27 C26 DOUB Y N 42 KNX C14 O5 DOUB N N 43 KNX C14 O4 SING N N 44 KNX C25 C26 SING Y N 45 KNX C26 CL2 SING N N 46 KNX C5 H1 SING N N 47 KNX C6 H2 SING N N 48 KNX C7 H3 SING N N 49 KNX C8 H4 SING N N 50 KNX C10 H5 SING N N 51 KNX C10 H6 SING N N 52 KNX C13 H7 SING N N 53 KNX C15 H8 SING N N 54 KNX C15 H9 SING N N 55 KNX C17 H10 SING N N 56 KNX C17 H11 SING N N 57 KNX C22 H12 SING N N 58 KNX C22 H13 SING N N 59 KNX C24 H14 SING N N 60 KNX C11 H15 SING N N 61 KNX C11 H16 SING N N 62 KNX C12 H17 SING N N 63 KNX C12 H18 SING N N 64 KNX C16 H19 SING N N 65 KNX C16 H20 SING N N 66 KNX C18 H21 SING N N 67 KNX C18 H22 SING N N 68 KNX C19 H23 SING N N 69 KNX C23 H24 SING N N 70 KNX C23 H25 SING N N 71 KNX C25 H26 SING N N 72 KNX C3 H27 SING N N 73 KNX C9 H28 SING N N 74 KNX N6 H30 SING N N 75 KNX N7 H32 SING N N 76 KNX N7 H33 SING N N 77 KNX N8 H34 SING N N 78 KNX N8 H35 SING N N 79 KNX O2 H37 SING N N 80 KNX O3 H38 SING N N 81 KNX O4 H39 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KNX SMILES ACDLabs 12.01 "O=C(O)C(N)CCN(CCCCC1CNCc2c1ccc(Cl)c2Cl)CC1OC(n2cnc3c(N)ncnc32)C(O)C1O" KNX InChI InChI 1.03 "InChI=1S/C27H36Cl2N8O5/c28-17-5-4-15-14(9-32-10-16(15)20(17)29)3-1-2-7-36(8-6-18(30)27(40)41)11-19-22(38)23(39)26(42-19)37-13-35-21-24(31)33-12-34-25(21)37/h4-5,12-14,18-19,22-23,26,32,38-39H,1-3,6-11,30H2,(H,40,41)(H2,31,33,34)/t14-,18-,19+,22+,23+,26+/m0/s1" KNX InChIKey InChI 1.03 VHXBLPZYVDYOPX-STPVDRQBSA-N KNX SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCN(CCCC[C@H]1CNCc2c(Cl)c(Cl)ccc12)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O" KNX SMILES CACTVS 3.385 "N[CH](CCN(CCCC[CH]1CNCc2c(Cl)c(Cl)ccc12)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O" KNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1[C@H](CNC2)CCCCN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)Cl)Cl" KNX SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c2c1C(CNC2)CCCCN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)Cl)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KNX "SYSTEMATIC NAME" ACDLabs 12.01 "5'-([(3S)-3-amino-3-carboxypropyl]{4-[(4R)-7,8-dichloro-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl}amino)-5'-deoxyadenosine" KNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[4-[(4~{R})-7,8-bis(chloranyl)-1,2,3,4-tetrahydroisoquinolin-4-yl]butyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KNX "Create component" 2022-02-08 RCSB KNX "Initial release" 2023-02-15 RCSB #