data_KOF # _chem_comp.id KOF _chem_comp.name "beta-D-ribosyl-(1->1)-D-ribitol-5-phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H21 O12 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R,3S,4S)-5-(((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)oxy)-2,3,4-trihydroxypentyl hydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-31 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.240 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KOF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A0M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KOF C7 C1 C 0 1 N N S -0.440 48.420 -11.305 -1.168 -0.026 0.309 C7 KOF 1 KOF C8 C2 C 0 1 N N R 1.057 48.739 -11.252 -2.447 -0.329 -0.474 C8 KOF 2 KOF C9 C3 C 0 1 N N N 1.722 48.224 -9.990 -3.657 0.183 0.310 C9 KOF 3 KOF C1 C4 C 0 1 N N R -4.693 50.987 -14.644 4.822 -1.353 -0.441 C1 KOF 4 KOF O5 O1 O 0 1 N N N -2.422 50.706 -15.201 4.066 0.802 0.188 O5 KOF 5 KOF C5 C5 C 0 1 N N N -2.660 48.914 -12.495 1.322 -0.235 0.307 C5 KOF 6 KOF C6 C6 C 0 1 N N S -1.198 49.272 -12.326 0.043 -0.538 -0.475 C6 KOF 7 KOF C4 C7 C 0 1 N N N -2.425 53.064 -15.082 6.095 2.117 -0.157 C4 KOF 8 KOF O4 O2 O 0 1 N N N -5.904 50.254 -14.777 5.104 -2.584 0.227 O4 KOF 9 KOF C3 C8 C 0 1 N N R -2.895 51.887 -15.885 5.493 0.829 0.408 C3 KOF 10 KOF O3 O3 O 0 1 N N N -4.666 50.859 -17.110 7.104 -1.009 0.366 O3 KOF 11 KOF C2 C9 C 0 1 N N R -3.471 50.088 -14.481 3.693 -0.590 0.285 C2 KOF 12 KOF C C10 C 0 1 N N S -4.399 51.690 -15.960 6.034 -0.398 -0.358 C KOF 13 KOF O10 O4 O 0 1 N N N 1.710 48.235 -12.418 -2.393 0.321 -1.745 O10 KOF 14 KOF O11 O5 O 0 1 N N N 2.153 49.306 -9.128 -4.858 -0.202 -0.363 O11 KOF 15 KOF O12 O6 O 0 1 N N N 2.725 50.586 -7.014 -6.425 1.633 0.376 O12 KOF 16 KOF O13 O7 O 0 1 N N N 1.018 48.672 -6.942 -7.432 -0.306 -0.886 O13 KOF 17 KOF O6 O8 O 0 1 N N N -2.930 54.306 -15.553 5.616 3.236 0.592 O6 KOF 18 KOF O7 O9 O 0 1 N N N -3.231 50.078 -13.100 2.441 -0.815 -0.366 O7 KOF 19 KOF O8 O10 O 0 1 N N N -0.534 49.242 -13.590 0.097 0.112 -1.746 O8 KOF 20 KOF O9 O11 O 0 1 N N N -1.013 48.595 -10.014 -1.222 -0.677 1.580 O9 KOF 21 KOF P1 P1 P 0 1 N N N 2.331 49.247 -7.504 -6.326 0.169 0.183 P1 KOF 22 KOF H5 H1 H 0 1 N N N -0.546 47.367 -11.605 -1.077 1.050 0.455 H5 KOF 23 KOF H6 H2 H 0 1 N N N 1.154 49.835 -11.248 -2.538 -1.406 -0.619 H6 KOF 24 KOF H25 H3 H 0 1 N N N 1.005 47.596 -9.441 -3.649 -0.246 1.312 H25 KOF 25 KOF H26 H4 H 0 1 N N N 2.599 47.621 -10.270 -3.612 1.270 0.379 H26 KOF 26 KOF H1 H5 H 0 1 N N N -4.743 51.717 -13.822 4.551 -1.537 -1.481 H1 KOF 27 KOF H20 H6 H 0 1 N N N -3.128 48.710 -11.521 1.459 0.844 0.377 H20 KOF 28 KOF H21 H7 H 0 1 N N N -2.775 48.037 -13.148 1.243 -0.657 1.310 H21 KOF 29 KOF H4 H8 H 0 1 N N N -1.167 50.307 -11.955 -0.048 -1.615 -0.621 H4 KOF 30 KOF H17 H9 H 0 1 N N N -2.751 52.928 -14.040 7.182 2.072 -0.087 H17 KOF 31 KOF H18 H10 H 0 1 N N N -1.326 53.097 -15.122 5.803 2.227 -1.201 H18 KOF 32 KOF H16 H11 H 0 1 N N N -6.098 49.810 -13.960 4.357 -3.197 0.256 H16 KOF 33 KOF H3 H12 H 0 1 N N N -2.479 51.939 -16.902 5.715 0.742 1.472 H3 KOF 34 KOF H7 H13 H 0 1 N N N -5.602 50.715 -17.187 7.481 -1.785 -0.071 H7 KOF 35 KOF H2 H14 H 0 1 N N N -3.690 49.081 -14.866 3.638 -0.896 1.330 H2 KOF 36 KOF H H15 H 0 1 N N N -4.921 52.656 -16.016 6.365 -0.110 -1.356 H KOF 37 KOF H24 H16 H 0 1 N N N 2.637 48.438 -12.375 -2.312 1.283 -1.692 H24 KOF 38 KOF H19 H19 H 0 1 N N N -2.599 55.010 -15.008 5.957 4.088 0.289 H19 KOF 39 KOF H22 H20 H 0 1 N N N 0.381 49.468 -13.473 0.177 1.074 -1.693 H22 KOF 40 KOF H23 H21 H 0 1 N N N -0.540 48.065 -9.383 -1.302 -1.639 1.527 H23 KOF 41 KOF O14 O14 O 0 1 N Y N 3.440 48.064 -7.113 -6.582 -0.576 1.587 O14 KOF 42 KOF H10 H23 H 0 1 N N N 4.160 48.452 -6.629 -6.532 -1.540 1.535 H10 KOF 43 KOF H27 H24 H 0 1 N N N 0.635 49.293 -6.333 -8.343 -0.114 -0.622 H27 KOF 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KOF O3 C SING N N 1 KOF C C3 SING N N 2 KOF C C1 SING N N 3 KOF C3 O5 SING N N 4 KOF C3 C4 SING N N 5 KOF O6 C4 SING N N 6 KOF O5 C2 SING N N 7 KOF O4 C1 SING N N 8 KOF C1 C2 SING N N 9 KOF C2 O7 SING N N 10 KOF O8 C6 SING N N 11 KOF O7 C5 SING N N 12 KOF C5 C6 SING N N 13 KOF O10 C8 SING N N 14 KOF C6 C7 SING N N 15 KOF C7 C8 SING N N 16 KOF C7 O9 SING N N 17 KOF C8 C9 SING N N 18 KOF C9 O11 SING N N 19 KOF O11 P1 SING N N 20 KOF P1 O12 DOUB N N 21 KOF P1 O13 SING N N 22 KOF C7 H5 SING N N 23 KOF C8 H6 SING N N 24 KOF C9 H25 SING N N 25 KOF C9 H26 SING N N 26 KOF C1 H1 SING N N 27 KOF C5 H20 SING N N 28 KOF C5 H21 SING N N 29 KOF C6 H4 SING N N 30 KOF C4 H17 SING N N 31 KOF C4 H18 SING N N 32 KOF O4 H16 SING N N 33 KOF C3 H3 SING N N 34 KOF O3 H7 SING N N 35 KOF C2 H2 SING N N 36 KOF C H SING N N 37 KOF O10 H24 SING N N 38 KOF O6 H19 SING N N 39 KOF O8 H22 SING N N 40 KOF O9 H23 SING N N 41 KOF P1 O14 SING N N 42 KOF O14 H10 SING N N 43 KOF O13 H27 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KOF InChI InChI 1.06 "InChI=1S/C10H21O12P/c11-1-6-8(15)9(16)10(22-6)20-2-4(12)7(14)5(13)3-21-23(17,18)19/h4-16H,1-3H2,(H2,17,18,19)/t4-,5+,6+,7-,8+,9+,10+/m0/s1" KOF InChIKey InChI 1.06 JWGOVVCXUKJSKW-DWMNMWHPSA-N KOF SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](OC[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)[C@H](O)[C@@H]1O" KOF SMILES CACTVS 3.385 "OC[CH]1O[CH](OC[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)[CH](O)[CH]1O" KOF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1[C@H]([C@H]([C@@H](O1)OC[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)O)O)O" KOF SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(O1)OCC(C(C(COP(=O)(O)O)O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id KOF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S})-5-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KOF _pdbx_chem_comp_synonyms.name "(2R,3S,4S)-5-(((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)oxy)-2,3,4-trihydroxypentyl hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KOF "Create component" 2022-05-31 PDBE KOF "Modify name" 2022-07-01 PDBE KOF "Modify descriptor" 2022-08-22 RCSB KOF "Initial release" 2023-04-26 RCSB #