data_KOX # _chem_comp.id KOX _chem_comp.name "4-[(2-chlorophenyl)methylsulfanyl]-5~{H}-pyrimidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H9 Cl N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-01 _chem_comp.pdbx_modified_date 2023-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 252.720 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KOX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A0S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KOX C10 C1 C 0 1 Y N N -13.190 -10.388 10.448 4.711 -0.761 -0.160 C10 KOX 1 KOX C15 C2 C 0 1 N N N -15.471 -18.524 10.740 -4.487 -0.302 1.053 C15 KOX 2 KOX O01 O1 O 0 1 N N N -12.927 -17.946 12.984 -3.778 0.610 -2.130 O01 KOX 3 KOX C02 C3 C 0 1 N N N -13.815 -17.682 12.186 -3.560 0.240 -0.990 C02 KOX 4 KOX N03 N1 N 0 1 N N N -14.157 -16.433 11.915 -2.289 0.016 -0.645 N03 KOX 5 KOX C04 C4 C 0 1 N N N -15.162 -16.277 11.065 -1.960 -0.397 0.561 C04 KOX 6 KOX S05 S1 S 0 1 N N N -15.676 -14.651 10.639 -0.328 -0.680 0.993 S05 KOX 7 KOX C06 C5 C 0 1 N N N -15.209 -13.692 12.088 0.488 -0.256 -0.566 C06 KOX 8 KOX C07 C6 C 0 1 Y N N -14.476 -12.511 11.525 1.977 -0.435 -0.419 C07 KOX 9 KOX C08 C7 C 0 1 Y N N -15.088 -11.279 11.587 2.559 -1.654 -0.714 C08 KOX 10 KOX C09 C8 C 0 1 Y N N -14.427 -10.194 11.031 3.924 -1.819 -0.579 C09 KOX 11 KOX C11 C9 C 0 1 Y N N -12.578 -11.640 10.387 4.131 0.459 0.130 C11 KOX 12 KOX C12 C10 C 0 1 Y N N -13.240 -12.704 10.931 2.763 0.623 0.000 C12 KOX 13 KOX CL13 CL1 CL 0 0 N N N -12.484 -14.304 10.873 2.033 2.156 0.363 CL13 KOX 14 KOX C14 C11 C 0 1 N N N -15.839 -17.275 10.462 -3.087 -0.593 1.559 C14 KOX 15 KOX N16 N2 N 0 1 N N N -14.477 -18.671 11.595 -4.612 0.087 -0.177 N16 KOX 16 KOX H1 H1 H 0 1 N N N -12.677 -9.538 10.023 5.778 -0.891 -0.055 H1 KOX 17 KOX H2 H2 H 0 1 N N N -15.961 -19.374 10.288 -5.349 -0.419 1.693 H2 KOX 18 KOX H3 H3 H 0 1 N N N -16.100 -13.369 12.646 0.119 -0.908 -1.358 H3 KOX 19 KOX H4 H4 H 0 1 N N N -14.555 -14.278 12.750 0.270 0.782 -0.820 H4 KOX 20 KOX H5 H5 H 0 1 N N N -16.054 -11.161 12.055 1.946 -2.478 -1.049 H5 KOX 21 KOX H6 H6 H 0 1 N N N -14.873 -9.211 11.054 4.378 -2.773 -0.802 H6 KOX 22 KOX H7 H7 H 0 1 N N N -11.610 -11.764 9.924 4.745 1.285 0.458 H7 KOX 23 KOX H8 H8 H 0 1 N N N -15.734 -17.135 9.376 -2.895 0.050 2.417 H8 KOX 24 KOX H9 H9 H 0 1 N N N -16.897 -17.173 10.745 -3.059 -1.627 1.903 H9 KOX 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KOX C11 C10 DOUB Y N 1 KOX C11 C12 SING Y N 2 KOX C10 C09 SING Y N 3 KOX C14 C15 SING N N 4 KOX C14 C04 SING N N 5 KOX S05 C04 SING N N 6 KOX S05 C06 SING N N 7 KOX C15 N16 DOUB N N 8 KOX CL13 C12 SING N N 9 KOX C12 C07 DOUB Y N 10 KOX C09 C08 DOUB Y N 11 KOX C04 N03 DOUB N N 12 KOX C07 C08 SING Y N 13 KOX C07 C06 SING N N 14 KOX N16 C02 SING N N 15 KOX N03 C02 SING N N 16 KOX C02 O01 DOUB N N 17 KOX C10 H1 SING N N 18 KOX C15 H2 SING N N 19 KOX C06 H3 SING N N 20 KOX C06 H4 SING N N 21 KOX C08 H5 SING N N 22 KOX C09 H6 SING N N 23 KOX C11 H7 SING N N 24 KOX C14 H8 SING N N 25 KOX C14 H9 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KOX InChI InChI 1.06 "InChI=1S/C11H9ClN2OS/c12-9-4-2-1-3-8(9)7-16-10-5-6-13-11(15)14-10/h1-4,6H,5,7H2" KOX InChIKey InChI 1.06 QZJFKUCKQQRGHU-UHFFFAOYSA-N KOX SMILES_CANONICAL CACTVS 3.385 "Clc1ccccc1CSC2=NC(=O)N=CC2" KOX SMILES CACTVS 3.385 "Clc1ccccc1CSC2=NC(=O)N=CC2" KOX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CSC2=NC(=O)N=CC2)Cl" KOX SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CSC2=NC(=O)N=CC2)Cl" # _pdbx_chem_comp_identifier.comp_id KOX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(2-chlorophenyl)methylsulfanyl]-5~{H}-pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KOX "Create component" 2022-06-01 PDBE KOX "Modify descriptor" 2022-08-22 RCSB KOX "Initial release" 2023-09-20 RCSB #