data_KP9 # _chem_comp.id KP9 _chem_comp.name "Bilin 618 (single linked)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H36 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1R,4S,5R)-3-(BENZO[B]THIOPHEN-2-YL)METHOXY-1,4,5-TRIHYDROXY-2-(THIEN-2-YL)METHYLCYCLOHEX-2-EN-1-CARBOXYLATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.662 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T8S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KP9 CBB C1 C 0 1 N N N N N N 5.580 39.312 8.974 -4.266 3.348 -0.203 CBB KP9 1 KP9 CBA C2 C 0 1 N N N N N N -0.973 42.614 14.192 4.283 5.345 -0.414 CBA KP9 2 KP9 CBC C3 C 0 1 N N N N N N 0.515 35.513 5.149 -4.389 -3.612 -0.038 CBC KP9 3 KP9 NB N1 N 0 1 Y N N N N N 1.187 40.535 9.612 -0.269 1.421 0.131 NB KP9 4 KP9 ND N2 N 0 1 N N N N N N -2.855 40.860 4.784 2.106 -1.882 1.290 ND KP9 5 KP9 OD O1 O 0 1 N N N N N N -3.883 41.277 2.636 3.486 -2.169 3.072 OD KP9 6 KP9 C1A C4 C 0 1 N N N N N N 3.565 44.035 13.678 3.387 1.148 -1.673 C1A KP9 7 KP9 C1B C5 C 0 1 Y N N N N N 1.826 40.919 10.827 0.089 2.703 0.450 C1B KP9 8 KP9 C1C C6 C 0 1 N N N N N N 0.391 38.782 7.138 -1.739 -1.071 -0.225 C1C KP9 9 KP9 C1D C7 C 0 1 N N R N N N -3.278 41.000 6.204 2.255 -2.102 -0.154 C1D KP9 10 KP9 C2A C8 C 0 1 N N N N N N 2.288 44.520 14.163 4.368 2.043 -1.180 C2A KP9 11 KP9 C2B C9 C 0 1 Y N N N N N 3.077 40.194 10.935 -1.059 3.396 0.830 C2B KP9 12 KP9 C2C C10 C 0 1 N N N N N N -0.024 37.853 6.127 -2.383 -2.341 -0.600 C2C KP9 13 KP9 C2D C11 C 0 1 N N N N N N -4.739 41.592 6.098 3.656 -2.631 -0.353 C2D KP9 14 KP9 C3A C12 C 0 1 N N N N N N 1.251 43.795 13.509 3.754 2.924 -0.352 C3A KP9 15 KP9 C3B C13 C 0 1 Y N N N N N 3.173 39.373 9.779 -2.127 2.523 0.742 C3B KP9 16 KP9 C3C C14 C 0 1 N N N N N N -1.408 38.027 5.892 -1.327 -3.238 -0.793 C3C KP9 17 KP9 C3D C15 C 0 1 N N N N N N -5.108 41.687 4.766 4.225 -2.697 0.863 C3D KP9 18 KP9 C4A C16 C 0 1 N N N N N N 1.882 42.860 12.618 2.378 2.586 -0.319 C4A KP9 19 KP9 C4B C17 C 0 1 Y N N N N N 2.009 39.586 8.969 -1.630 1.293 0.300 C4B KP9 20 KP9 C4C C18 C 0 1 N N N N N N -1.851 39.073 6.774 -0.154 -2.539 -0.546 C4C KP9 21 KP9 C4D C19 C 0 1 N N N N N N -3.941 41.274 3.907 3.265 -2.227 1.878 C4D KP9 22 KP9 CAA C20 C 0 1 N N N N N N -0.316 43.978 13.711 4.413 4.054 0.396 CAA KP9 23 KP9 CAB C21 C 0 1 N N N N N N 4.356 38.400 9.417 -3.565 2.841 1.059 CAB KP9 24 KP9 CAC C22 C 0 1 N N N N N N 0.924 36.831 5.397 -3.814 -2.606 -0.741 CAC KP9 25 KP9 CAD C23 C 0 1 N N N N N N -6.567 42.101 4.303 5.600 -3.162 1.139 CAD KP9 26 KP9 CBD C24 C 0 1 N N N N N N -6.753 42.734 3.063 6.056 -3.184 2.384 CBD KP9 27 KP9 CGB C25 C 0 1 N N N N N N 5.141 40.318 7.822 -5.704 3.665 0.114 CGB KP9 28 KP9 CGC C26 C 0 1 N N N N N N 1.556 34.599 4.400 -5.790 -3.803 -0.093 CGC KP9 29 KP9 CHA C27 C 0 1 N N N N N N 1.163 41.961 11.806 1.398 3.233 0.401 CHA KP9 30 KP9 CHB C28 C 0 1 N N N N N N 1.713 38.888 7.601 -2.383 0.134 0.076 CHB KP9 31 KP9 CHC C29 C 0 1 N N N N N N -3.324 39.624 6.858 1.230 -3.128 -0.639 CHC KP9 32 KP9 CMA C30 C 0 1 N N N N N N 2.064 45.662 15.234 5.836 2.021 -1.518 CMA KP9 33 KP9 CMB C31 C 0 1 N N N N N N 4.156 40.232 12.096 -1.124 4.839 1.261 CMB KP9 34 KP9 CMC C32 C 0 1 N N N N N N -2.296 37.213 4.858 -1.442 -4.687 -1.191 CMC KP9 35 KP9 CMD C33 C 0 1 N N N N N N -5.715 41.815 7.325 4.294 -3.013 -1.664 CMD KP9 36 KP9 NA N3 N 0 1 N N N N N N 3.297 43.020 12.726 2.194 1.489 -1.151 NA KP9 37 KP9 NC N4 N 0 1 N N N N N N -0.738 39.551 7.535 -0.415 -1.293 -0.221 NC KP9 38 KP9 O1B O2 O 0 1 N N N N N N 4.930 41.596 8.073 -6.517 4.129 -0.849 O1B KP9 39 KP9 O1C O3 O 0 1 N N N N N N 1.149 33.509 3.763 -6.479 -3.064 -0.772 O1C KP9 40 KP9 O2B O4 O 0 1 N N N N N N 5.003 39.867 6.596 -6.126 3.503 1.234 O2B KP9 41 KP9 O2C O5 O 0 1 N N N N N N 2.825 34.973 4.414 -6.363 -4.805 0.607 O2C KP9 42 KP9 OA O6 O 0 1 N N N N N N 4.732 44.433 14.010 3.589 0.227 -2.443 OA KP9 43 KP9 HBB2 H1 H 0 0 N N N N N N 6.393 38.671 8.603 -3.765 4.248 -0.560 HBB2 KP9 44 KP9 HBB1 H2 H 0 0 N N N N N N 5.934 39.888 9.842 -4.225 2.580 -0.975 HBB1 KP9 45 KP9 HBA3 H3 H 0 0 N N N N N N -2.055 42.755 14.327 4.767 5.219 -1.381 HBA3 KP9 46 KP9 HBA2 H4 H 0 0 N N N N N N -0.797 41.835 13.435 3.228 5.576 -0.563 HBA2 KP9 47 KP9 HBA1 H5 H 0 0 N N N N N N -0.521 42.306 15.147 4.760 6.163 0.127 HBA1 KP9 48 KP9 HBC1 H6 H 0 0 N N N N N N -0.455 35.147 5.453 -3.778 -4.268 0.564 HBC1 KP9 49 KP9 HNB H7 H 0 1 N N N N N N 0.310 40.878 9.275 0.334 0.721 -0.166 HNB KP9 50 KP9 HND H8 H 0 1 N N N N N N -1.961 40.532 4.479 1.314 -1.544 1.738 HND KP9 51 KP9 H1D1 H9 H 0 0 N N N N N N -2.623 41.686 6.761 2.128 -1.162 -0.692 H1D1 KP9 52 KP9 HAA2 H11 H 0 1 N Y N N N N -0.496 44.755 14.469 5.468 3.824 0.545 H2 KP9 53 KP9 HAA1 H12 H 0 0 N N N N N N -0.771 44.284 12.758 3.928 4.181 1.364 HAA1 KP9 54 KP9 HAB1 H13 H 0 0 N N N N N N 4.061 37.735 8.592 -3.606 3.609 1.831 HAB1 KP9 55 KP9 HAB2 H14 H 0 0 N N N N N N 4.632 37.796 10.294 -4.066 1.940 1.415 HAB2 KP9 56 KP9 HAC1 H15 H 0 0 N N N N N N 1.906 37.150 5.082 -4.413 -2.001 -1.405 HAC1 KP9 57 KP9 HAD1 H16 H 0 0 N N N N N N -7.415 41.897 4.939 6.234 -3.485 0.326 HAD1 KP9 58 KP9 HBD1 H17 H 0 0 N N N N N N -7.745 43.017 2.745 5.422 -2.862 3.197 HBD1 KP9 59 KP9 HBD2 H18 H 0 0 N N N N N N -5.904 42.937 2.428 7.061 -3.524 2.585 HBD2 KP9 60 KP9 HHA1 H19 H 0 0 N N N N N N 0.085 41.988 11.858 1.631 4.147 0.928 HHA1 KP9 61 KP9 HHB1 H21 H 0 0 N N N N N N 2.525 38.487 7.012 -3.460 0.170 0.137 HHB1 KP9 62 KP9 HHC2 H23 H 0 0 N N N N N N -3.645 39.707 7.907 1.444 -3.393 -1.675 HHC2 KP9 63 KP9 HHC1 H24 H 0 0 N N N N N N -4.014 38.962 6.314 1.288 -4.021 -0.017 HHC1 KP9 64 KP9 HMA3 H25 H 0 0 N N N N N N 3.038 46.046 15.571 6.038 1.202 -2.208 HMA3 KP9 65 KP9 HMA2 H26 H 0 0 N N N N N N 1.484 46.480 14.782 6.116 2.966 -1.983 HMA2 KP9 66 KP9 HMA1 H27 H 0 0 N N N N N N 1.513 45.255 16.095 6.417 1.880 -0.606 HMA1 KP9 67 KP9 HMB2 H28 H 0 0 N N N N N N 4.905 41.006 11.876 -1.292 5.471 0.390 HMB2 KP9 68 KP9 HMB3 H29 H 0 0 N N N N N N 3.660 40.463 13.050 -1.943 4.970 1.968 HMB3 KP9 69 KP9 HMB1 H30 H 0 0 N N N N N N 4.651 39.253 12.168 -0.185 5.118 1.738 HMB1 KP9 70 KP9 HMC1 H31 H 0 0 N N N N N N -3.334 37.574 4.902 -2.494 -4.948 -1.312 HMC1 KP9 71 KP9 HMC3 H32 H 0 0 N N N N N N -1.900 37.357 3.842 -0.917 -4.848 -2.132 HMC3 KP9 72 KP9 HMC2 H33 H 0 0 N N N N N N -2.269 36.144 5.114 -1.000 -5.313 -0.416 HMC2 KP9 73 KP9 HMD1 H34 H 0 0 N N N N N N -5.160 41.678 8.265 4.795 -2.144 -2.091 HMD1 KP9 74 KP9 HMD2 H35 H 0 0 N N N N N N -6.125 42.835 7.286 5.022 -3.806 -1.496 HMD2 KP9 75 KP9 HMD3 H36 H 0 0 N N N N N N -6.538 41.087 7.276 3.526 -3.364 -2.353 HMD3 KP9 76 KP9 HNA H37 H 0 1 N N N N N N 3.984 42.503 12.215 1.351 1.041 -1.322 HNA KP9 77 KP9 HO1B H39 H 0 1 N N N N N N 4.690 42.042 7.269 -7.431 4.319 -0.598 H6 KP9 78 KP9 HO2C H40 H 0 1 N N N N N N 3.344 34.353 3.916 -7.323 -4.856 0.507 H7 KP9 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KP9 OD C4D DOUB N N 1 KP9 CBD CAD DOUB N N 2 KP9 O1C CGC DOUB N N 3 KP9 C4D C3D SING N N 4 KP9 C4D ND SING N N 5 KP9 CAD C3D SING N N 6 KP9 CGC O2C SING N N 7 KP9 CGC CBC SING N N 8 KP9 C3D C2D DOUB N N 9 KP9 ND C1D SING N N 10 KP9 CMC C3C SING N N 11 KP9 CBC CAC DOUB N E 12 KP9 CAC C2C SING N N 13 KP9 C3C C2C DOUB N N 14 KP9 C3C C4C SING N N 15 KP9 C2D C1D SING N N 16 KP9 C2D CMD SING N N 17 KP9 C2C C1C SING N N 18 KP9 C1D CHC SING N N 19 KP9 O2B CGB DOUB N N 20 KP9 C4C CHC SING N N 21 KP9 C4C NC DOUB N N 22 KP9 C1C NC SING N N 23 KP9 C1C CHB DOUB N Z 24 KP9 CHB C4B SING N N 25 KP9 CGB O1B SING N N 26 KP9 CGB CBB SING N N 27 KP9 C4B NB SING Y N 28 KP9 C4B C3B DOUB Y N 29 KP9 CBB CAB SING N N 30 KP9 CAB C3B SING N N 31 KP9 NB C1B SING Y N 32 KP9 C3B C2B SING Y N 33 KP9 C1B C2B DOUB Y N 34 KP9 C1B CHA SING N N 35 KP9 C2B CMB SING N N 36 KP9 CHA C4A DOUB N Z 37 KP9 C4A NA SING N N 38 KP9 C4A C3A SING N N 39 KP9 NA C1A SING N N 40 KP9 C3A CAA SING N N 41 KP9 C3A C2A DOUB N N 42 KP9 C1A OA DOUB N N 43 KP9 C1A C2A SING N N 44 KP9 CAA CBA SING N N 45 KP9 C2A CMA SING N N 46 KP9 CBB HBB2 SING N N 47 KP9 CBB HBB1 SING N N 48 KP9 CBA HBA3 SING N N 49 KP9 CBA HBA2 SING N N 50 KP9 CBA HBA1 SING N N 51 KP9 CBC HBC1 SING N N 52 KP9 NB HNB SING N N 53 KP9 ND HND SING N N 54 KP9 C1D H1D1 SING N N 55 KP9 CAA HAA2 SING N N 56 KP9 CAA HAA1 SING N N 57 KP9 CAB HAB1 SING N N 58 KP9 CAB HAB2 SING N N 59 KP9 CAC HAC1 SING N N 60 KP9 CAD HAD1 SING N N 61 KP9 CBD HBD1 SING N N 62 KP9 CBD HBD2 SING N N 63 KP9 CHA HHA1 SING N N 64 KP9 CHB HHB1 SING N N 65 KP9 CHC HHC2 SING N N 66 KP9 CHC HHC1 SING N N 67 KP9 CMA HMA3 SING N N 68 KP9 CMA HMA2 SING N N 69 KP9 CMA HMA1 SING N N 70 KP9 CMB HMB2 SING N N 71 KP9 CMB HMB3 SING N N 72 KP9 CMB HMB1 SING N N 73 KP9 CMC HMC1 SING N N 74 KP9 CMC HMC3 SING N N 75 KP9 CMC HMC2 SING N N 76 KP9 CMD HMD1 SING N N 77 KP9 CMD HMD2 SING N N 78 KP9 CMD HMD3 SING N N 79 KP9 NA HNA SING N N 80 KP9 O1B HO1B SING N N 81 KP9 O2C HO2C SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KP9 SMILES ACDLabs 12.01 "O=C(O)CCc1c(C)c(/C=C2\NC(=O)C(C)=C2CC)[NH]c1/C=C1\N=C(CC2NC(=O)C(C=C)=C2C)C(C)=C1/C=C/C(=O)O" KP9 InChI InChI 1.03 "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8-9,11,14-15,26,35H,2,7,10,12-13H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b11-9+,27-14-,28-15-/t26-/m1/s1" KP9 InChIKey InChI 1.03 DWOKJMXOEBXRPB-ZHKKBVGESA-N KP9 SMILES_CANONICAL CACTVS 3.385 "CCC/1=C(C)C(=O)NC/1=C/c2[nH]c(/C=C/3N=C(C[C@H]4NC(=O)C(=C4C)C=C)C(=C/3/C=C/C(O)=O)C)c(CCC(O)=O)c2C" KP9 SMILES CACTVS 3.385 "CCC1=C(C)C(=O)NC1=Cc2[nH]c(C=C3N=C(C[CH]4NC(=O)C(=C4C)C=C)C(=C3C=CC(O)=O)C)c(CCC(O)=O)c2C" KP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC\1=C(C(=O)N/C1=C\c2c(c(c([nH]2)/C=C\3/C(=C(C(=N3)C[C@@H]4C(=C(C(=O)N4)C=C)C)C)/C=C/C(=O)O)CCC(=O)O)C)C" KP9 SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)NC1=Cc2c(c(c([nH]2)C=C3C(=C(C(=N3)CC4C(=C(C(=O)N4)C=C)C)C)C=CC(=O)O)CCC(=O)O)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KP9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(Z)-(3-ethyl-4-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{[(2R)-4-ethenyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-2H-pyrrol-3-yl]prop-2-enoic acid" KP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[(~{Z})-[5-[[(2~{R})-4-ethenyl-3-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl]methyl]-4-methyl-3-[(~{E})-3-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrol-2-ylidene]methyl]-5-[(~{Z})-(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KP9 "Create component" 2022-02-09 RCSB KP9 "Modify name" 2022-09-20 RCSB KP9 "Modify synonyms" 2022-09-20 RCSB KP9 "Modify atom id" 2022-09-20 RCSB KP9 "Initial release" 2023-02-15 RCSB KP9 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KP9 _pdbx_chem_comp_synonyms.name "(1R,4S,5R)-3-(BENZO[B]THIOPHEN-2-YL)METHOXY-1,4,5-TRIHYDROXY-2-(THIEN-2-YL)METHYLCYCLOHEX-2-EN-1-CARBOXYLATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KP9 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAA _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #