data_KPU # _chem_comp.id KPU _chem_comp.name "(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-05 _chem_comp.pdbx_modified_date 2023-08-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KPU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8H1Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KPU P P1 P 0 1 N N N 41.631 9.539 49.427 -3.948 -0.963 0.241 P KPU 1 KPU O1P O1 O 0 1 N N N 42.056 10.890 50.007 -5.370 -0.516 -0.367 O1P KPU 2 KPU O2P O2 O 0 1 N N N 41.042 8.643 50.475 -4.111 -1.278 1.812 O2P KPU 3 KPU O3P O3 O 0 1 N N N 42.707 8.875 48.656 -3.470 -2.176 -0.458 O3P KPU 4 KPU O4P O4 O 0 1 N N N 40.508 9.939 48.302 -2.881 0.227 0.041 O4P KPU 5 KPU C5A C1 C 0 1 N N N 39.381 10.728 48.672 -1.499 0.099 0.382 C5A KPU 6 KPU C5 C2 C 0 1 Y N N 38.193 10.249 47.874 -0.784 1.388 0.071 C5 KPU 7 KPU C6 C3 C 0 1 Y N N 37.864 10.877 46.725 -1.475 2.461 -0.458 C6 KPU 8 KPU N1 N1 N 0 1 Y N N 36.819 10.538 45.959 -0.859 3.596 -0.730 N1 KPU 9 KPU C4 C4 C 0 1 Y N N 37.386 9.091 48.264 0.575 1.513 0.316 C4 KPU 10 KPU C3 C5 C 0 1 Y N N 36.224 8.721 47.440 1.193 2.721 0.013 C3 KPU 11 KPU O3 O5 O 0 1 N N N 35.443 7.663 47.770 2.523 2.890 0.237 O3 KPU 12 KPU C2 C6 C 0 1 Y N N 36.010 9.476 46.198 0.431 3.755 -0.511 C2 KPU 13 KPU C2A C7 C 0 1 N N N 34.876 9.126 45.317 1.085 5.072 -0.840 C2A KPU 14 KPU C4A C8 C 0 1 N N N 37.726 8.447 49.578 1.362 0.367 0.899 C4A KPU 15 KPU N N2 N 0 1 N N N 36.960 7.265 49.877 1.891 -0.466 -0.190 N KPU 16 KPU CA C9 C 0 1 N N S 37.086 6.658 51.230 2.667 -1.595 0.342 CA KPU 17 KPU C C10 C 0 1 N N N 35.844 7.041 52.014 4.083 -1.153 0.605 C KPU 18 KPU OXT O6 O 0 1 N N N 35.586 6.279 53.020 4.978 -2.024 1.096 OXT KPU 19 KPU O O7 O 0 1 N N N 35.132 8.067 51.699 4.413 -0.014 0.373 O KPU 20 KPU CB C11 C 0 1 N N N 38.343 7.011 52.065 2.670 -2.736 -0.678 CB KPU 21 KPU CC C12 C 0 1 N N N 39.560 6.166 51.761 1.246 -3.269 -0.852 CC KPU 22 KPU OG O8 O 0 1 N N N 39.980 6.243 50.453 1.249 -4.334 -1.804 OG KPU 23 KPU H1 H1 H 0 1 N N N 42.957 11.070 49.765 -6.062 -1.186 -0.281 H1 KPU 24 KPU H2 H2 H 0 1 N N N 41.476 7.798 50.451 -4.421 -0.525 2.334 H2 KPU 25 KPU H3 H3 H 0 1 N N N 39.578 11.787 48.449 -1.407 -0.120 1.446 H3 KPU 26 KPU H4 H4 H 0 1 N N N 39.180 10.611 49.747 -1.056 -0.712 -0.195 H4 KPU 27 KPU H5 H5 H 0 1 N N N 38.481 11.703 46.404 -2.534 2.370 -0.651 H5 KPU 28 KPU H6 H6 H 0 1 N N N 35.730 7.304 48.602 3.082 2.645 -0.513 H6 KPU 29 KPU H7 H7 H 0 1 N N N 34.820 9.846 44.487 1.041 5.727 0.030 H7 KPU 30 KPU H8 H8 H 0 1 N N N 35.024 8.113 44.915 2.127 4.902 -1.113 H8 KPU 31 KPU H9 H9 H 0 1 N N N 33.940 9.159 45.894 0.562 5.540 -1.674 H9 KPU 32 KPU H10 H10 H 0 1 N N N 38.791 8.172 49.561 2.189 0.759 1.491 H10 KPU 33 KPU H11 H11 H 0 1 N N N 37.550 9.182 50.377 0.712 -0.235 1.534 H11 KPU 34 KPU H12 H12 H 0 1 N N N 35.996 7.498 49.747 1.149 -0.789 -0.792 H12 KPU 35 KPU H14 H14 H 0 1 N N N 37.075 5.565 51.110 2.215 -1.940 1.272 H14 KPU 36 KPU H15 H15 H 0 1 N N N 34.810 6.596 53.468 5.874 -1.694 1.248 H15 KPU 37 KPU H16 H16 H 0 1 N N N 38.599 8.063 51.871 3.039 -2.367 -1.635 H16 KPU 38 KPU H17 H17 H 0 1 N N N 38.095 6.884 53.129 3.317 -3.538 -0.324 H17 KPU 39 KPU H18 H18 H 0 1 N N N 39.318 5.117 51.986 0.877 -3.638 0.105 H18 KPU 40 KPU H19 H19 H 0 1 N N N 40.384 6.499 52.409 0.599 -2.466 -1.206 H19 KPU 41 KPU H20 H20 H 0 1 N N N 40.744 5.691 50.332 0.377 -4.720 -1.965 H20 KPU 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KPU C2A C2 SING N N 1 KPU N1 C2 DOUB Y N 2 KPU N1 C6 SING Y N 3 KPU C2 C3 SING Y N 4 KPU C6 C5 DOUB Y N 5 KPU C3 O3 SING N N 6 KPU C3 C4 DOUB Y N 7 KPU C5 C4 SING Y N 8 KPU C5 C5A SING N N 9 KPU C4 C4A SING N N 10 KPU O4P C5A SING N N 11 KPU O4P P SING N N 12 KPU O3P P DOUB N N 13 KPU P O1P SING N N 14 KPU P O2P SING N N 15 KPU C4A N SING N N 16 KPU N CA SING N N 17 KPU OG CC SING N N 18 KPU CA C SING N N 19 KPU CA CB SING N N 20 KPU O C DOUB N N 21 KPU CC CB SING N N 22 KPU C OXT SING N N 23 KPU O1P H1 SING N N 24 KPU O2P H2 SING N N 25 KPU C5A H3 SING N N 26 KPU C5A H4 SING N N 27 KPU C6 H5 SING N N 28 KPU O3 H6 SING N N 29 KPU C2A H7 SING N N 30 KPU C2A H8 SING N N 31 KPU C2A H9 SING N N 32 KPU C4A H10 SING N N 33 KPU C4A H11 SING N N 34 KPU N H12 SING N N 35 KPU CA H14 SING N N 36 KPU OXT H15 SING N N 37 KPU CB H16 SING N N 38 KPU CB H17 SING N N 39 KPU CC H18 SING N N 40 KPU CC H19 SING N N 41 KPU OG H20 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KPU InChI InChI 1.06 "InChI=1S/C12H19N2O8P/c1-7-11(16)9(5-14-10(2-3-15)12(17)18)8(4-13-7)6-22-23(19,20)21/h4,10,14-16H,2-3,5-6H2,1H3,(H,17,18)(H2,19,20,21)/t10-/m0/s1" KPU InChIKey InChI 1.06 GLDZRPISEAFFFS-JTQLQIEISA-N KPU SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@H](CCO)C(O)=O)c1O" KPU SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(CN[CH](CCO)C(O)=O)c1O" KPU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](CCO)C(=O)O)O" KPU SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(CCO)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id KPU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-oxidanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KPU "Create component" 2022-10-05 PDBJ KPU "Initial release" 2023-08-16 RCSB #