data_KPX # _chem_comp.id KPX _chem_comp.name "Bilin 584 (single linked)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H38 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2E)-3-(2-{(Z)-[3-(2-carboxyethyl)-5-{(Z)-[(3R,4R)-3-ethyl-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2R)-4-ethenyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)prop-2-enoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-09 _chem_comp.pdbx_modified_date 2023-02-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 586.678 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7T8S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KPX O2B O1 O 0 1 N N N -22.613 37.649 15.453 6.791 -2.491 -0.549 O2B KPX 1 KPX NB N1 N 0 1 N N N -18.038 37.017 17.715 0.645 -1.505 0.428 NB KPX 2 KPX ND N2 N 0 1 N N N -14.742 38.296 11.883 -2.458 1.721 -1.398 ND KPX 3 KPX OD O2 O 0 1 N N N -13.861 38.615 9.757 -4.115 0.441 -2.284 OD KPX 4 KPX C1A C1 C 0 1 N N N -18.527 34.148 22.676 -3.273 -1.258 1.202 C1A KPX 5 KPX C1B C2 C 0 1 N N N -18.645 36.168 18.638 0.558 -2.828 0.433 C1B KPX 6 KPX C1C C3 C 0 1 Y N N -17.361 39.353 15.821 1.526 1.246 0.358 C1C KPX 7 KPX C1D C4 C 0 1 N N R -14.335 37.577 13.041 -2.444 2.978 -0.640 C1D KPX 8 KPX C2A C5 C 0 1 N N R -18.156 32.739 22.240 -4.178 -2.463 1.074 C2A KPX 9 KPX C2B C6 C 0 1 N N N -19.851 36.759 19.035 1.861 -3.368 0.309 C2B KPX 10 KPX C2C C7 C 0 1 Y N N -17.149 40.465 15.025 1.859 2.613 0.305 C2C KPX 11 KPX C2D C8 C 0 1 N N N -12.981 37.001 12.630 -3.890 3.390 -0.487 C2D KPX 12 KPX C3A C9 C 0 1 N N R -17.750 32.856 20.773 -3.214 -3.629 0.779 C3A KPX 13 KPX C3B C10 C 0 1 N N N -19.971 37.969 18.371 2.721 -2.320 0.230 C3B KPX 14 KPX C3C C11 C 0 1 Y N N -15.961 40.284 14.328 0.648 3.325 0.440 C3C KPX 15 KPX C3D C12 C 0 1 N N N -12.724 37.308 11.359 -4.630 2.451 -1.100 C3D KPX 16 KPX C4A C13 C 0 1 N N N -18.266 34.253 20.349 -1.849 -2.976 0.767 C4A KPX 17 KPX C4B C14 C 0 1 N N N -18.838 38.121 17.553 1.935 -1.141 0.307 C4B KPX 18 KPX C4C C15 C 0 1 Y N N -15.444 39.061 14.692 -0.351 2.422 0.567 C4C KPX 19 KPX C4D C16 C 0 1 N N N -13.793 38.136 10.864 -3.742 1.421 -1.669 C4D KPX 20 KPX CAA C17 C 0 1 N N N -18.261 31.716 19.916 -3.526 -4.252 -0.583 CAA KPX 21 KPX CAB C18 C 0 1 N N N -21.168 38.991 18.513 4.220 -2.395 0.089 CAB KPX 22 KPX CAC C19 C 0 1 N N N -18.082 41.654 14.962 3.199 3.184 0.141 CAC KPX 23 KPX CAD C20 C 0 1 N N N -11.348 37.121 10.693 -6.105 2.453 -1.195 CAD KPX 24 KPX CBA C21 C 0 1 N N N -17.522 31.624 18.612 -4.911 -4.902 -0.542 CBA KPX 25 KPX CBB C22 C 0 1 N N N -22.403 38.463 17.753 4.599 -2.293 -1.389 CBB KPX 26 KPX CBC C23 C 0 1 N N N -18.311 42.312 13.809 4.214 2.764 0.930 CBC KPX 27 KPX CBD C24 C 0 1 N N N -11.212 37.204 9.335 -6.730 1.470 -1.827 CBD KPX 28 KPX CGB C25 C 0 1 N N N -22.179 38.566 16.230 6.097 -2.368 -1.530 CGB KPX 29 KPX CGC C26 C 0 1 N N N -19.270 43.499 13.832 5.551 3.333 0.767 CGC KPX 30 KPX CHA C27 C 0 1 N N N -18.051 34.806 19.071 -0.684 -3.603 0.548 CHA KPX 31 KPX CHB C28 C 0 1 N N N -18.608 39.205 16.744 2.417 0.169 0.265 CHB KPX 32 KPX CHC C29 C 0 1 N N N -14.130 38.450 14.178 -1.811 2.758 0.735 CHC KPX 33 KPX CMA C30 C 0 1 N N N -17.058 32.115 23.140 -4.931 -2.709 2.382 CMA KPX 34 KPX CMB C31 C 0 1 N N N -20.872 36.207 20.024 2.224 -4.830 0.271 CMB KPX 35 KPX CMC C32 C 0 1 N N N -15.341 41.272 13.343 0.495 4.824 0.438 CMC KPX 36 KPX CMD C33 C 0 1 N N N -12.013 36.246 13.580 -4.404 4.618 0.220 CMD KPX 37 KPX NA N3 N 0 1 N N N -18.584 35.007 21.534 -2.002 -1.631 1.013 NA KPX 38 KPX NC N4 N 0 1 Y N N -16.316 38.482 15.623 0.164 1.167 0.525 NC KPX 39 KPX O1B O3 O 0 1 N N N -21.546 39.548 15.755 6.661 -2.298 -2.746 O1B KPX 40 KPX O1C O4 O 0 1 N N N -19.163 44.432 12.983 5.750 4.186 -0.078 O1C KPX 41 KPX O2C O5 O 0 1 N N N -20.171 43.540 14.712 6.564 2.914 1.553 O2C KPX 42 KPX OA O6 O 0 1 N N N -18.754 34.490 23.834 -3.644 -0.127 1.436 OA KPX 43 KPX HND H2 H 0 1 N N N -15.581 38.835 11.807 -1.682 1.202 -1.660 HND KPX 44 KPX H1D1 H3 H 0 0 N N N -15.035 36.764 13.282 -1.892 3.741 -1.189 H1D1 KPX 45 KPX H2A1 H4 H 0 0 N N N -19.053 32.105 22.304 -4.879 -2.327 0.250 H2A1 KPX 46 KPX H3A1 H5 H 0 0 N N N -16.651 32.868 20.718 -3.272 -4.381 1.565 H3A1 KPX 47 KPX HAA1 H7 H 0 0 N N N -19.329 31.877 19.709 -3.511 -3.477 -1.350 HAA1 KPX 48 KPX HAA2 H8 H 0 0 N Y N -18.132 30.772 20.466 -2.777 -5.009 -0.817 HAA2 KPX 49 KPX HAB2 H9 H 0 0 N N N -20.869 39.963 18.093 4.678 -1.574 0.640 HAB2 KPX 50 KPX HAB1 H10 H 0 0 N N N -21.419 39.113 19.577 4.575 -3.345 0.490 HAB1 KPX 51 KPX HAC1 H11 H 0 0 N N N -18.577 41.984 15.864 3.376 3.941 -0.609 HAC1 KPX 52 KPX HAD1 H12 H 0 0 N N N -10.481 36.922 11.305 -6.673 3.256 -0.748 HAD1 KPX 53 KPX HBA3 H13 H 0 0 N N N -17.922 30.787 18.022 -5.669 -4.132 -0.400 HBA3 KPX 54 KPX HBA1 H14 H 0 0 N N N -17.650 32.562 18.051 -5.095 -5.424 -1.480 HBA1 KPX 55 KPX HBA2 H15 H 0 0 N N N -16.453 31.457 18.808 -4.955 -5.611 0.284 HBA2 KPX 56 KPX HBB1 H16 H 0 0 N N N -23.283 39.061 18.032 4.140 -3.114 -1.940 HBB1 KPX 57 KPX HBB2 H17 H 0 0 N N N -22.574 37.411 18.024 4.243 -1.343 -1.790 HBB2 KPX 58 KPX HBC1 H18 H 0 0 N N N -17.828 42.007 12.892 4.038 2.007 1.679 HBC1 KPX 59 KPX HBD1 H19 H 0 0 N N N -10.241 37.071 8.880 -6.162 0.667 -2.273 HBD1 KPX 60 KPX HBD2 H20 H 0 0 N N N -12.075 37.403 8.717 -7.808 1.472 -1.896 HBD2 KPX 61 KPX HHA1 H21 H 0 0 N N N -17.447 34.257 18.364 -0.659 -4.679 0.457 HHA1 KPX 62 KPX HHB1 H23 H 0 0 N N N -19.335 40.004 16.747 3.476 0.351 0.161 HHB1 KPX 63 KPX HHC2 H25 H 0 0 N N N -13.669 37.869 14.991 -1.908 3.666 1.330 HHC2 KPX 64 KPX HHC1 H26 H 0 0 N N N -13.454 39.265 13.880 -2.317 1.935 1.240 HHC1 KPX 65 KPX HMA3 H27 H 0 0 N N N -17.420 32.063 24.178 -5.557 -1.846 2.609 HMA3 KPX 66 KPX HMA1 H28 H 0 0 N N N -16.823 31.102 22.782 -5.558 -3.595 2.280 HMA1 KPX 67 KPX HMA2 H29 H 0 0 N N N -16.152 32.738 23.098 -4.216 -2.862 3.190 HMA2 KPX 68 KPX HMB1 H30 H 0 0 N N N -20.528 35.233 20.401 1.319 -5.432 0.355 HMB1 KPX 69 KPX HMB2 H31 H 0 0 N N N -20.983 36.907 20.865 2.724 -5.056 -0.670 HMB2 KPX 70 KPX HMB3 H32 H 0 0 N N N -21.842 36.083 19.519 2.891 -5.061 1.102 HMB3 KPX 71 KPX HMC2 H33 H 0 0 N N N -15.712 41.062 12.329 0.576 5.199 1.459 HMC2 KPX 72 KPX HMC1 H34 H 0 0 N N N -15.618 42.297 13.629 1.278 5.269 -0.175 HMC1 KPX 73 KPX HMC3 H35 H 0 0 N N N -14.246 41.169 13.361 -0.481 5.089 0.030 HMC3 KPX 74 KPX HMD3 H36 H 0 0 N N N -12.484 36.130 14.567 -4.470 5.444 -0.489 HMD3 KPX 75 KPX HMD2 H37 H 0 0 N N N -11.789 35.253 13.162 -5.391 4.413 0.633 HMD2 KPX 76 KPX HMD1 H38 H 0 0 N N N -11.080 36.819 13.684 -3.721 4.885 1.026 HMD1 KPX 77 KPX HNA H39 H 0 1 N N N -18.810 35.981 21.555 -1.256 -1.011 1.052 HNA KPX 78 KPX HNC H40 H 0 1 N N N -16.199 37.593 16.065 -0.348 0.345 0.594 HNC KPX 79 KPX HO1B H41 H 0 0 N N N -21.478 39.456 14.812 7.626 -2.350 -2.786 HO1B KPX 80 KPX HO2C H42 H 0 0 N N N -20.684 44.332 14.603 7.409 3.347 1.371 HO2C KPX 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KPX CBD CAD DOUB N N 1 KPX OD C4D DOUB N N 2 KPX CAD C3D SING N N 3 KPX C4D C3D SING N N 4 KPX C4D ND SING N N 5 KPX C3D C2D DOUB N N 6 KPX ND C1D SING N N 7 KPX C2D C1D SING N N 8 KPX C2D CMD SING N N 9 KPX O1C CGC DOUB N N 10 KPX C1D CHC SING N N 11 KPX CMC C3C SING N N 12 KPX CBC CGC SING N N 13 KPX CBC CAC DOUB N E 14 KPX CGC O2C SING N N 15 KPX CHC C4C SING N N 16 KPX C3C C4C DOUB Y N 17 KPX C3C C2C SING Y N 18 KPX C4C NC SING Y N 19 KPX CAC C2C SING N N 20 KPX C2C C1C DOUB Y N 21 KPX O2B CGB DOUB N N 22 KPX NC C1C SING Y N 23 KPX O1B CGB SING N N 24 KPX C1C CHB SING N N 25 KPX CGB CBB SING N N 26 KPX CHB C4B DOUB N Z 27 KPX C4B NB SING N N 28 KPX C4B C3B SING N N 29 KPX NB C1B DOUB N N 30 KPX CBB CAB SING N N 31 KPX C3B CAB SING N N 32 KPX C3B C2B DOUB N N 33 KPX CBA CAA SING N N 34 KPX C1B C2B SING N N 35 KPX C1B CHA SING N N 36 KPX C2B CMB SING N N 37 KPX CHA C4A DOUB N Z 38 KPX CAA C3A SING N N 39 KPX C4A C3A SING N N 40 KPX C4A NA SING N N 41 KPX C3A C2A SING N N 42 KPX NA C1A SING N N 43 KPX C2A C1A SING N N 44 KPX C2A CMA SING N N 45 KPX C1A OA DOUB N N 46 KPX ND HND SING N N 47 KPX C1D H1D1 SING N N 48 KPX C2A H2A1 SING N N 49 KPX C3A H3A1 SING N N 50 KPX CAA HAA1 SING N N 51 KPX CAA HAA2 SING N N 52 KPX CAB HAB2 SING N N 53 KPX CAB HAB1 SING N N 54 KPX CAC HAC1 SING N N 55 KPX CAD HAD1 SING N N 56 KPX CBA HBA3 SING N N 57 KPX CBA HBA1 SING N N 58 KPX CBA HBA2 SING N N 59 KPX CBB HBB1 SING N N 60 KPX CBB HBB2 SING N N 61 KPX CBC HBC1 SING N N 62 KPX CBD HBD1 SING N N 63 KPX CBD HBD2 SING N N 64 KPX CHA HHA1 SING N N 65 KPX CHB HHB1 SING N N 66 KPX CHC HHC2 SING N N 67 KPX CHC HHC1 SING N N 68 KPX CMA HMA3 SING N N 69 KPX CMA HMA1 SING N N 70 KPX CMA HMA2 SING N N 71 KPX CMB HMB1 SING N N 72 KPX CMB HMB2 SING N N 73 KPX CMB HMB3 SING N N 74 KPX CMC HMC2 SING N N 75 KPX CMC HMC1 SING N N 76 KPX CMC HMC3 SING N N 77 KPX CMD HMD3 SING N N 78 KPX CMD HMD2 SING N N 79 KPX CMD HMD1 SING N N 80 KPX NA HNA SING N N 81 KPX NC HNC SING N N 82 KPX O1B HO1B SING N N 83 KPX O2C HO2C SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KPX SMILES ACDLabs 12.01 "O=C(O)CCC1=C(C)C(/C=C2\NC(=O)C(C)C2CC)=N/C1=C\c1[NH]c(CC2NC(=O)C(C=C)=C2C)c(C)c1/C=C/C(=O)O" KPX InChI InChI 1.06 "InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8-9,11,14-15,19-20,26,34H,2,7,10,12-13H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b11-9+,27-14-,29-15-/t19-,20-,26-/m1/s1" KPX InChIKey InChI 1.06 DELSVXYVYXKOJW-GUEBWASOSA-N KPX SMILES_CANONICAL CACTVS 3.385 "CC[C@@H]/1[C@@H](C)C(=O)NC/1=C/C2=N\C(=C/c3[nH]c(C[C@H]4NC(=O)C(=C4C)C=C)c(C)c3/C=C/C(O)=O)C(=C2C)CCC(O)=O" KPX SMILES CACTVS 3.385 "CC[CH]1[CH](C)C(=O)NC1=CC2=NC(=Cc3[nH]c(C[CH]4NC(=O)C(=C4C)C=C)c(C)c3C=CC(O)=O)C(=C2C)CCC(O)=O" KPX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H]\1[C@H](C(=O)N/C1=C\C2=N/C(=C\c3c(c(c([nH]3)C[C@@H]4C(=C(C(=O)N4)C=C)C)C)/C=C/C(=O)O)/C(=C2C)CCC(=O)O)C" KPX SMILES "OpenEye OEToolkits" 2.0.7 "CCC1C(C(=O)NC1=CC2=NC(=Cc3c(c(c([nH]3)CC4C(=C(C(=O)N4)C=C)C)C)C=CC(=O)O)C(=C2C)CCC(=O)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KPX "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-3-(2-{(Z)-[3-(2-carboxyethyl)-5-{(Z)-[(3R,4R)-3-ethyl-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2R)-4-ethenyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)prop-2-enoic acid" KPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(2~{Z})-2-[[5-[[(2~{R})-4-ethenyl-3-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl]methyl]-4-methyl-3-[(~{E})-3-oxidanyl-3-oxidanylidene-prop-1-enyl]-1~{H}-pyrrol-2-yl]methylidene]-5-[(~{Z})-[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-pyrrol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KPX "Create component" 2022-02-09 RCSB KPX "Other modification" 2022-09-20 RCSB KPX "Initial release" 2023-02-15 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KPX _pdbx_chem_comp_synonyms.name "(2E)-3-(2-{(Z)-[3-(2-carboxyethyl)-5-{(Z)-[(3R,4R)-3-ethyl-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-2-ylidene]methyl}-5-{[(2R)-4-ethenyl-3-methyl-5-oxo-2,5-dihydro-1H-pyrrol-2-yl]methyl}-4-methyl-1H-pyrrol-3-yl)prop-2-enoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #