data_KQT # _chem_comp.id KQT _chem_comp.name Berberine _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H27 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2019-06-18 _chem_comp.pdbx_modified_date 2020-05-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KQT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6S15 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KQT O2 O1 O 0 1 N N N 2.169 -15.272 5.237 5.476 2.611 0.216 O2 KQT 1 KQT C2 C1 C 0 1 Y N N 1.072 -16.097 5.273 4.162 2.455 -0.040 C2 KQT 2 KQT C3 C2 C 0 1 Y N N 1.430 -17.339 5.727 3.558 1.959 1.128 C3 KQT 3 KQT O3 O2 O 0 1 N N N -6.376 -21.389 5.742 -4.903 1.786 -0.891 O3 KQT 4 KQT C4 C3 C 0 1 Y N N -0.229 -15.809 4.941 3.411 2.707 -1.178 C4 KQT 5 KQT O4 O3 O 0 1 N N N -6.049 -24.054 5.404 -6.050 -0.122 0.703 O4 KQT 6 KQT C5 C4 C 0 1 Y N N -1.183 -16.824 5.034 2.058 2.419 -1.120 C5 KQT 7 KQT C6 C5 C 0 1 Y N N -0.811 -18.112 5.462 1.453 1.868 0.012 C6 KQT 8 KQT C1 C6 C 0 1 N N N 3.265 -16.067 5.698 5.781 1.809 1.368 C1 KQT 9 KQT O1 O4 O 0 1 N N N 2.783 -17.383 5.978 4.524 1.849 2.063 O1 KQT 10 KQT C19 C7 C 0 1 N N N -7.113 -20.913 4.613 -5.177 1.312 -2.211 C19 KQT 11 KQT C18 C8 C 0 1 Y N N -5.115 -21.911 5.526 -4.124 0.999 -0.102 C18 KQT 12 KQT C13 C9 C 0 1 Y N N -4.021 -21.007 5.506 -2.726 1.155 -0.097 C13 KQT 13 KQT C12 C10 C 0 1 Y N N -2.696 -21.537 5.362 -1.927 0.309 0.719 C12 KQT 14 KQT C15 C11 C 0 1 Y N N -2.550 -22.949 5.255 -2.551 -0.644 1.537 C15 KQT 15 KQT C16 C12 C 0 1 Y N N -3.626 -23.784 5.255 -3.909 -0.775 1.517 C16 KQT 16 KQT C17 C13 C 0 1 Y N N -4.917 -23.280 5.390 -4.700 0.035 0.703 C17 KQT 17 KQT C20 C14 C 0 1 N N N -5.901 -25.478 5.289 -6.585 -1.134 1.559 C20 KQT 18 KQT C11 C15 C 0 1 Y N N -1.579 -20.637 5.312 -0.529 0.470 0.670 C11 KQT 19 KQT C10 C16 C 0 1 Y N N -1.833 -19.185 5.448 0.011 1.519 -0.041 C10 KQT 20 KQT N1 N1 N 1 1 Y N N -3.178 -18.770 5.603 -0.779 2.255 -0.849 N1 KQT 21 KQT C14 C17 C 0 1 Y N N -4.191 -19.628 5.617 -2.083 2.120 -0.882 C14 KQT 22 KQT C7 C18 C 0 1 Y N N 0.506 -18.342 5.865 2.205 1.674 1.177 C7 KQT 23 KQT C8 C19 C 0 1 N N N -2.642 -16.536 4.807 1.184 2.754 -2.308 C8 KQT 24 KQT C9 C20 C 0 1 N N N -3.456 -17.325 5.805 -0.171 3.224 -1.773 C9 KQT 25 KQT C21 C21 C 0 1 N N N -0.204 -21.234 5.077 0.339 -0.573 1.334 C21 KQT 26 KQT C22 C22 C 0 1 N N N 0.426 -21.882 6.348 0.562 -1.740 0.370 C22 KQT 27 KQT C23 C23 C 0 1 N N N 1.683 -22.714 6.093 1.441 -2.796 1.042 C23 KQT 28 KQT C25 C24 C 0 1 Y N N 3.037 -22.075 5.852 1.660 -3.946 0.093 C25 KQT 29 KQT C26 C25 C 0 1 Y N N 3.252 -20.706 5.728 2.736 -3.949 -0.781 C26 KQT 30 KQT C27 C26 C 0 1 Y N N 4.536 -20.205 5.476 2.905 -5.021 -1.637 C27 KQT 31 KQT N2 N2 N 0 1 Y N N 5.590 -20.992 5.344 2.058 -6.031 -1.628 N2 KQT 32 KQT C29 C27 C 0 1 Y N N 5.408 -22.366 5.469 1.024 -6.062 -0.811 C29 KQT 33 KQT C30 C28 C 0 1 Y N N 4.130 -22.927 5.732 0.794 -5.028 0.077 C30 KQT 34 KQT H1 H1 H 0 1 N N N -0.508 -14.818 4.615 3.864 3.113 -2.070 H1 KQT 35 KQT H2 H2 H 0 1 N N N 4.042 -16.114 4.921 6.038 0.789 1.080 H2 KQT 36 KQT H3 H3 H 0 1 N N N -8.089 -20.531 4.946 -4.240 1.190 -2.754 H3 KQT 37 KQT H4 H4 H 0 1 N N N -6.551 -20.104 4.123 -5.692 0.354 -2.153 H4 KQT 38 KQT H5 H5 H 0 1 N N N -7.265 -21.737 3.901 -5.808 2.033 -2.731 H5 KQT 39 KQT H6 H6 H 0 1 N N N -1.559 -23.370 5.172 -1.980 -1.281 2.195 H6 KQT 40 KQT H7 H7 H 0 1 N N N -3.476 -24.848 5.149 -4.377 -1.521 2.142 H7 KQT 41 KQT H8 H8 H 0 1 N N N -6.892 -25.954 5.316 -7.671 -1.154 1.463 H8 KQT 42 KQT H9 H9 H 0 1 N N N -5.405 -25.719 4.337 -6.177 -2.104 1.274 H9 KQT 43 KQT H10 H10 H 0 1 N N N -5.292 -25.852 6.125 -6.316 -0.916 2.592 H10 KQT 44 KQT H11 H11 H 0 1 N N N -5.193 -19.239 5.719 -2.669 2.761 -1.525 H11 KQT 45 KQT H12 H12 H 0 1 N N N 0.793 -19.297 6.280 1.758 1.362 2.110 H12 KQT 46 KQT H13 H13 H 0 1 N N N -2.832 -15.461 4.943 1.645 3.552 -2.886 H13 KQT 47 KQT H14 H14 H 0 1 N N N -2.922 -16.832 3.785 1.048 1.869 -2.925 H14 KQT 48 KQT H15 H15 H 0 1 N N N -3.175 -17.032 6.827 -0.843 3.378 -2.614 H15 KQT 49 KQT H16 H16 H 0 1 N N N -4.527 -17.128 5.649 -0.030 4.168 -1.251 H16 KQT 50 KQT H17 H17 H 0 1 N N N -0.290 -22.007 4.300 1.300 -0.131 1.597 H17 KQT 51 KQT H18 H18 H 0 1 N N N 0.466 -20.435 4.727 -0.154 -0.935 2.236 H18 KQT 52 KQT H19 H19 H 0 1 N N N 0.687 -21.075 7.049 -0.399 -2.182 0.106 H19 KQT 53 KQT H20 H20 H 0 1 N N N -0.329 -22.537 6.807 1.055 -1.378 -0.532 H20 KQT 54 KQT H21 H21 H 0 1 N N N 1.470 -23.328 5.205 2.402 -2.354 1.306 H21 KQT 55 KQT H22 H22 H 0 1 N N N 1.803 -23.367 6.970 0.948 -3.158 1.944 H22 KQT 56 KQT H23 H23 H 0 1 N N N 2.421 -20.023 5.827 3.433 -3.124 -0.794 H23 KQT 57 KQT H24 H24 H 0 1 N N N 4.670 -19.137 5.386 3.741 -5.031 -2.321 H24 KQT 58 KQT H25 H25 H 0 1 N N N 6.260 -23.022 5.363 0.351 -6.906 -0.832 H25 KQT 59 KQT H26 H26 H 0 1 N N N 4.009 -23.995 5.837 -0.055 -5.059 0.745 H26 KQT 60 KQT H28 H28 H 0 1 N N N 3.687 -15.624 6.612 6.574 2.260 1.963 H28 KQT 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KQT C19 O3 SING N N 1 KQT C8 C5 SING N N 2 KQT C8 C9 SING N N 3 KQT C4 C5 DOUB Y N 4 KQT C4 C2 SING Y N 5 KQT C5 C6 SING Y N 6 KQT C21 C11 SING N N 7 KQT C21 C22 SING N N 8 KQT O2 C2 SING N N 9 KQT O2 C1 SING N N 10 KQT C16 C15 DOUB Y N 11 KQT C16 C17 SING Y N 12 KQT C15 C12 SING Y N 13 KQT C2 C3 DOUB Y N 14 KQT C20 O4 SING N N 15 KQT C11 C12 DOUB Y N 16 KQT C11 C10 SING Y N 17 KQT N2 C29 DOUB Y N 18 KQT N2 C27 SING Y N 19 KQT C12 C13 SING Y N 20 KQT C17 O4 SING N N 21 KQT C17 C18 DOUB Y N 22 KQT C10 C6 SING N N 23 KQT C10 N1 DOUB Y N 24 KQT C6 C7 DOUB Y N 25 KQT C29 C30 SING Y N 26 KQT C27 C26 DOUB Y N 27 KQT C13 C18 SING Y N 28 KQT C13 C14 DOUB Y N 29 KQT C18 O3 SING N N 30 KQT N1 C14 SING Y N 31 KQT N1 C9 SING N N 32 KQT C1 O1 SING N N 33 KQT C3 C7 SING Y N 34 KQT C3 O1 SING N N 35 KQT C26 C25 SING Y N 36 KQT C30 C25 DOUB Y N 37 KQT C25 C23 SING N N 38 KQT C23 C22 SING N N 39 KQT C4 H1 SING N N 40 KQT C1 H2 SING N N 41 KQT C19 H3 SING N N 42 KQT C19 H4 SING N N 43 KQT C19 H5 SING N N 44 KQT C15 H6 SING N N 45 KQT C16 H7 SING N N 46 KQT C20 H8 SING N N 47 KQT C20 H9 SING N N 48 KQT C20 H10 SING N N 49 KQT C14 H11 SING N N 50 KQT C7 H12 SING N N 51 KQT C8 H13 SING N N 52 KQT C8 H14 SING N N 53 KQT C9 H15 SING N N 54 KQT C9 H16 SING N N 55 KQT C21 H17 SING N N 56 KQT C21 H18 SING N N 57 KQT C22 H19 SING N N 58 KQT C22 H20 SING N N 59 KQT C23 H21 SING N N 60 KQT C23 H22 SING N N 61 KQT C26 H23 SING N N 62 KQT C27 H24 SING N N 63 KQT C29 H25 SING N N 64 KQT C30 H26 SING N N 65 KQT C1 H28 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KQT InChI InChI 1.03 "InChI=1S/C28H27N2O4/c1-31-24-7-6-20-21(5-3-4-18-8-11-29-12-9-18)27-22-15-26-25(33-17-34-26)14-19(22)10-13-30(27)16-23(20)28(24)32-2/h6-9,11-12,14-16H,3-5,10,13,17H2,1-2H3/q+1" KQT InChIKey InChI 1.03 QVKHJFYKHMGTFF-UHFFFAOYSA-N KQT SMILES_CANONICAL CACTVS 3.385 "COc1ccc2c(CCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC" KQT SMILES CACTVS 3.385 "COc1ccc2c(CCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC" KQT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OC)c[n+]3c(c2CCCc4ccncc4)-c5cc6c(cc5CC3)OCO6" KQT SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OC)c[n+]3c(c2CCCc4ccncc4)-c5cc6c(cc5CC3)OCO6" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KQT "Create component" 2019-06-18 RCSB KQT "Initial release" 2020-06-03 RCSB ##