data_KSB # _chem_comp.id KSB _chem_comp.name "lambda-[Ru(tap2-dppz-CN)]2+" _chem_comp.type "D-beta-peptide, C-gamma linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H21 N13 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Cyano-derivative of Ruthenium-dipyridophenazine" _chem_comp.pdbx_formal_charge 6 _chem_comp.pdbx_initial_date 2016-08-23 _chem_comp.pdbx_modified_date 2024-01-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 772.741 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KSB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5LS8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KSB C1 C1 C 0 1 Y N N N N N 18.489 19.084 3.028 1.189 0.771 -0.213 C1 KSB 1 KSB C10 C2 C 0 1 Y N N N N N 19.686 18.641 3.479 1.153 -0.126 0.924 C10 KSB 2 KSB C11 C3 C 0 1 Y N N N N N 22.072 17.759 4.204 1.020 -1.686 3.172 C11 KSB 3 KSB C12 C4 C 0 1 Y N N N N N 21.842 17.995 2.835 -0.102 -1.319 2.442 C12 KSB 4 KSB C13 C5 C 0 1 Y N N N N N 17.870 18.748 7.948 5.932 -0.327 0.934 C13 KSB 5 KSB C14 C6 C 0 1 Y N N N N N 18.016 18.561 9.318 7.139 -0.860 1.423 C14 KSB 6 KSB C15 C7 C 0 1 Y N N N N N 16.659 19.211 7.442 5.968 0.563 -0.231 C15 KSB 7 KSB C16 C8 C 0 1 Y N N N N N 15.591 19.483 8.296 7.206 0.850 -0.827 C16 KSB 8 KSB C17 C9 C 0 1 Y N N N N N 15.734 19.275 9.669 8.360 0.288 -0.313 C17 KSB 9 KSB C18 C10 C 0 1 Y N N N N N 16.948 18.826 10.174 8.313 -0.564 0.813 C18 KSB 10 KSB C19 C11 C 0 1 Y N N N N N 21.760 20.971 0.445 -1.765 -2.533 -0.858 C19 KSB 11 KSB C2 C12 C 0 1 Y N N N N N 17.326 19.680 1.127 0.030 2.017 -1.764 C2 KSB 12 KSB C20 C13 C 0 1 Y N N N N N 19.861 21.630 1.595 -0.139 -1.631 -2.172 C20 KSB 13 KSB C21 C14 C 0 1 Y N N N N N 20.412 22.920 1.627 -0.030 -2.836 -2.862 C21 KSB 14 KSB C22 C15 C 0 1 Y N N N N N 22.305 22.233 0.473 -1.663 -3.763 -1.549 C22 KSB 15 KSB C23 C16 C 0 1 Y N N N N N 23.550 22.412 -0.133 -2.495 -4.840 -1.162 C23 KSB 16 KSB C24 C17 C 0 1 Y N N N N N 24.203 21.329 -0.742 -3.391 -4.711 -0.152 C24 KSB 17 KSB C25 C18 C 0 1 Y N N N N N 23.610 20.067 -0.749 -3.529 -3.494 0.558 C25 KSB 18 KSB C26 C19 C 0 1 Y N N N N N 22.388 19.925 -0.144 -2.712 -2.393 0.212 C26 KSB 19 KSB C27 C20 C 0 1 Y N N N N N 23.497 17.794 -1.259 -4.498 -2.195 2.178 C27 KSB 20 KSB C28 C21 C 0 1 Y N N N N N 22.248 17.655 -0.638 -3.684 -1.125 1.826 C28 KSB 21 KSB C29 C22 C 0 1 Y N N N N N 19.215 16.943 -0.923 -2.998 2.239 0.620 C29 KSB 22 KSB C3 C23 C 0 1 Y N N N N N 16.218 19.969 1.935 1.190 2.587 -2.260 C3 KSB 23 KSB C30 C24 C 0 1 Y N N N N N 19.951 16.048 1.091 -1.691 1.952 2.459 C30 KSB 24 KSB C31 C25 C 0 1 Y N N N N N 19.640 14.782 0.565 -2.296 3.055 3.058 C31 KSB 25 KSB C32 C26 C 0 1 Y N N N N N 18.913 15.714 -1.447 -3.622 3.362 1.215 C32 KSB 26 KSB C33 C27 C 0 1 Y N N N N N 18.398 15.675 -2.744 -4.629 4.050 0.500 C33 KSB 27 KSB C34 C28 C 0 1 Y N N N N N 18.197 16.860 -3.469 -5.004 3.664 -0.743 C34 KSB 28 KSB C35 C29 C 0 1 Y N N N N N 18.525 18.092 -2.897 -4.404 2.552 -1.383 C35 KSB 29 KSB C36 C30 C 0 1 Y N N N N N 19.034 18.090 -1.621 -3.396 1.829 -0.699 C36 KSB 30 KSB C37 C31 C 0 1 Y N N N N N 18.724 20.402 -2.837 -4.165 1.121 -3.154 C37 KSB 31 KSB C38 C32 C 0 1 Y N N N N N 19.250 20.384 -1.530 -3.178 0.417 -2.467 C38 KSB 32 KSB C39 C33 C 0 1 N N N N N N 14.766 19.524 10.488 9.622 0.571 -0.933 C39 KSB 33 KSB C4 C34 C 0 1 Y N N N N N 16.242 19.809 3.320 2.409 2.194 -1.741 C4 KSB 34 KSB C5 C35 C 0 1 Y N N N N N 17.413 19.348 3.884 2.416 1.250 -0.713 C5 KSB 35 KSB C6 C36 C 0 1 Y N N N N N 17.561 19.145 5.258 3.683 0.741 -0.165 C6 KSB 36 KSB C7 C37 C 0 1 Y N N N N N 18.785 18.676 5.745 3.648 -0.151 0.993 C7 KSB 37 KSB C8 C38 C 0 1 Y N N N N N 19.857 18.420 4.840 2.344 -0.533 1.561 C8 KSB 38 KSB C9 C39 C 0 1 Y N N N N N 21.113 17.960 5.210 2.269 -1.311 2.720 C9 KSB 39 KSB N1 N1 N 1 1 Y N N N N N 20.647 18.443 2.447 -0.008 -0.577 1.350 N1 KSB 40 KSB N10 N2 N 0 1 Y N N N N N 19.134 14.623 -0.678 -3.237 3.732 2.437 N10 KSB 41 KSB N11 N3 N 0 1 Y N N N N N 18.372 19.286 -3.513 -4.755 2.163 -2.608 N11 KSB 42 KSB N12 N4 N 1 1 Y N N N N N 19.399 19.219 -0.896 -2.816 0.786 -1.256 N12 KSB 43 KSB N2 N5 N 1 1 Y N N N N N 18.474 19.226 1.638 0.058 1.121 -0.788 N2 KSB 44 KSB N3 N6 N 0 1 Y N N N N N 16.528 19.401 6.099 4.836 1.072 -0.714 N3 KSB 45 KSB N4 N7 N 0 1 Y N N N N N 18.904 18.488 7.089 4.769 -0.627 1.504 N4 KSB 46 KSB N5 N8 N 1 1 Y N N N N N 20.532 20.632 1.000 -1.006 -1.512 -1.183 N5 KSB 47 KSB N6 N9 N 0 1 Y N N N N N 21.607 23.217 1.081 -0.783 -3.870 -2.545 N6 KSB 48 KSB N7 N10 N 0 1 Y N N N N N 24.157 18.969 -1.308 -4.412 -3.351 1.548 N7 KSB 49 KSB N74 N11 N 0 1 N N N N N N 13.898 19.746 11.232 10.622 0.795 -1.424 N74 KSB 50 KSB N8 N12 N 1 1 Y N N N N N 21.687 18.725 -0.065 -2.806 -1.250 0.850 N8 KSB 51 KSB N9 N13 N 1 1 Y N N N N N 19.724 17.146 0.352 -2.059 1.567 1.251 N9 KSB 52 KSB RU RU1 RU 0 0 N N N N N N 20.073 18.879 0.766 -1.452 0.045 0.052 RU KSB 53 KSB H1 H1 H 0 1 N N N N N N 23.047 17.401 4.499 0.915 -2.266 4.075 H1 KSB 54 KSB H2 H2 H 0 1 N N N N N N 22.622 17.816 2.110 -1.081 -1.635 2.782 H2 KSB 55 KSB H3 H3 H 0 1 N N N N N N 18.956 18.211 9.719 7.130 -1.510 2.287 H3 KSB 56 KSB H4 H4 H 0 1 N N N N N N 14.658 19.853 7.897 7.257 1.504 -1.684 H4 KSB 57 KSB H5 H5 H 0 1 N N N N N N 17.065 18.681 11.238 9.233 -0.989 1.194 H5 KSB 58 KSB H6 H6 H 0 1 N N N N N N 17.250 19.829 0.060 -0.925 2.310 -2.184 H6 KSB 59 KSB H7 H7 H 0 1 N N N N N N 18.899 21.441 2.048 0.487 -0.795 -2.445 H7 KSB 60 KSB H8 H8 H 0 1 N N N N N N 19.854 23.709 2.110 0.684 -2.925 -3.671 H8 KSB 61 KSB H9 H9 H 0 1 N N N N N N 24.013 23.388 -0.133 -2.417 -5.786 -1.682 H9 KSB 62 KSB H10 H10 H 0 1 N N N N N N 25.167 21.474 -1.206 -4.011 -5.556 0.116 H10 KSB 63 KSB H11 H11 H 0 1 N N N N N N 23.948 16.926 -1.716 -5.214 -2.079 2.981 H11 KSB 64 KSB H12 H12 H 0 1 N N N N N N 21.747 16.699 -0.623 -3.770 -0.187 2.356 H12 KSB 65 KSB H13 H13 H 0 1 N N N N N N 15.313 20.329 1.468 1.140 3.330 -3.040 H13 KSB 66 KSB H14 H14 H 0 1 N N N N N N 20.370 16.137 2.083 -0.920 1.410 2.986 H14 KSB 67 KSB H15 H15 H 0 1 N N N N N N 19.811 13.907 1.175 -1.988 3.358 4.050 H15 KSB 68 KSB H16 H16 H 0 1 N N N N N N 18.152 14.724 -3.194 -5.113 4.906 0.956 H16 KSB 69 KSB H17 H17 H 0 1 N N N N N N 17.789 16.820 -4.468 -5.780 4.218 -1.258 H17 KSB 70 KSB H18 H18 H 0 1 N N N N N N 18.595 21.357 -3.324 -4.451 0.806 -4.148 H18 KSB 71 KSB H19 H19 H 0 1 N N N N N N 19.531 21.307 -1.044 -2.706 -0.437 -2.931 H19 KSB 72 KSB H20 H20 H 0 1 N N N N N N 15.378 20.037 3.927 3.329 2.607 -2.118 H20 KSB 73 KSB H21 H21 H 0 1 N N N N N N 21.347 17.762 6.246 3.160 -1.608 3.246 H21 KSB 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KSB N11 C35 DOUB Y N 1 KSB N11 C37 SING Y N 2 KSB C34 C35 SING Y N 3 KSB C34 C33 DOUB Y N 4 KSB C35 C36 SING Y N 5 KSB C37 C38 DOUB Y N 6 KSB C33 C32 SING Y N 7 KSB C36 C29 SING Y N 8 KSB C36 N12 DOUB Y N 9 KSB C38 N12 SING Y N 10 KSB C32 C29 DOUB Y N 11 KSB C32 N10 SING Y N 12 KSB N7 C27 DOUB Y N 13 KSB N7 C25 SING Y N 14 KSB C27 C28 SING Y N 15 KSB C29 N9 SING Y N 16 KSB N12 RU SING N N 17 KSB C25 C24 DOUB Y N 18 KSB C25 C26 SING Y N 19 KSB C24 C23 SING Y N 20 KSB N10 C31 DOUB Y N 21 KSB C28 N8 DOUB Y N 22 KSB C26 N8 SING Y N 23 KSB C26 C19 DOUB Y N 24 KSB C23 C22 DOUB Y N 25 KSB N8 RU SING N N 26 KSB N9 RU SING N N 27 KSB N9 C30 DOUB Y N 28 KSB C19 C22 SING Y N 29 KSB C19 N5 SING Y N 30 KSB C22 N6 SING Y N 31 KSB C31 C30 SING Y N 32 KSB RU N5 SING N N 33 KSB RU N2 SING N N 34 KSB RU N1 SING N N 35 KSB N5 C20 DOUB Y N 36 KSB N6 C21 DOUB Y N 37 KSB C2 N2 DOUB Y N 38 KSB C2 C3 SING Y N 39 KSB C20 C21 SING Y N 40 KSB N2 C1 SING Y N 41 KSB C3 C4 DOUB Y N 42 KSB N1 C12 DOUB Y N 43 KSB N1 C10 SING Y N 44 KSB C12 C11 SING Y N 45 KSB C1 C10 DOUB Y N 46 KSB C1 C5 SING Y N 47 KSB C4 C5 SING Y N 48 KSB C10 C8 SING Y N 49 KSB C5 C6 DOUB Y N 50 KSB C11 C9 DOUB Y N 51 KSB C8 C9 SING Y N 52 KSB C8 C7 DOUB Y N 53 KSB C6 C7 SING Y N 54 KSB C6 N3 SING Y N 55 KSB C7 N4 SING Y N 56 KSB N3 C15 DOUB Y N 57 KSB N4 C13 DOUB Y N 58 KSB C15 C13 SING Y N 59 KSB C15 C16 SING Y N 60 KSB C13 C14 SING Y N 61 KSB C16 C17 DOUB Y N 62 KSB C14 C18 DOUB Y N 63 KSB C17 C18 SING Y N 64 KSB C17 C39 SING N N 65 KSB C39 N74 TRIP N N 66 KSB C11 H1 SING N N 67 KSB C12 H2 SING N N 68 KSB C14 H3 SING N N 69 KSB C16 H4 SING N N 70 KSB C18 H5 SING N N 71 KSB C2 H6 SING N N 72 KSB C20 H7 SING N N 73 KSB C21 H8 SING N N 74 KSB C23 H9 SING N N 75 KSB C24 H10 SING N N 76 KSB C27 H11 SING N N 77 KSB C28 H12 SING N N 78 KSB C3 H13 SING N N 79 KSB C30 H14 SING N N 80 KSB C31 H15 SING N N 81 KSB C33 H16 SING N N 82 KSB C34 H17 SING N N 83 KSB C37 H18 SING N N 84 KSB C38 H19 SING N N 85 KSB C4 H20 SING N N 86 KSB C9 H21 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KSB InChI InChI 1.03 "InChI=1S/C19H9N5.2C10H6N4.Ru/c20-10-11-5-6-14-15(9-11)24-19-13-4-2-8-22-17(13)16-12(18(19)23-14)3-1-7-21-16;2*1-2-8-10(14-6-4-12-8)9-7(1)11-3-5-13-9;/h1-9H;2*1-6H;/q;;;+6" KSB InChIKey InChI 1.03 HNFPSJMHTKCUIN-UHFFFAOYSA-N KSB SMILES_CANONICAL CACTVS 3.385 "N#Cc1ccc2nc3c4ccc[n+]5c4c6c(ccc[n+]6[Ru]578([n+]9ccnc%10ccc%11ncc[n+]7c%11c9%10)[n+]%12ccnc%13ccc%14ncc[n+]8c%14c%12%13)c3nc2c1" KSB SMILES CACTVS 3.385 "N#Cc1ccc2nc3c4ccc[n+]5c4c6c(ccc[n+]6[Ru]578([n+]9ccnc%10ccc%11ncc[n+]7c%11c9%10)[n+]%12ccnc%13ccc%14ncc[n+]8c%14c%12%13)c3nc2c1" KSB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cc2c3c(c4ccc[n+]5c4c2[n+](c1)[Ru]567([n+]8ccnc9c8c1[n+]6ccnc1cc9)[n+]1ccnc2c1c1[n+]7ccnc1cc2)nc1cc(ccc1n3)C#N" KSB SMILES "OpenEye OEToolkits" 2.0.5 "c1cc2c3c(c4ccc[n+]5c4c2[n+](c1)[Ru]567([n+]8ccnc9c8c1[n+]6ccnc1cc9)[n+]1ccnc2c1c1[n+]7ccnc1cc2)nc1cc(ccc1n3)C#N" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KSB "Create component" 2016-08-23 RCSB KSB "Modify name" 2016-11-24 EBI KSB "Initial release" 2018-01-17 RCSB KSB "Obsolete component" 2019-08-13 EBI KSB "Other modification" 2023-12-21 EBI KSB "Modify name" 2024-01-03 PDBE #