data_KT3 # _chem_comp.id KT3 _chem_comp.name "N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H40 F3 N7 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-11-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 803.694 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KT3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RC1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KT3 N2A 2N N 0 1 N N N -19.041 73.910 37.580 -4.825 2.082 5.646 N2A KT3 1 KT3 CD1 1CD C 0 1 N N N -19.176 72.787 38.263 -4.151 2.930 6.512 CD1 KT3 2 KT3 OEB 1OE1 O 0 1 N N N -19.781 71.779 37.874 -3.561 3.954 6.179 OEB KT3 3 KT3 CG1 1CG C 0 1 N N N -18.481 72.891 39.572 -4.252 2.456 7.952 CG1 KT3 4 KT3 CB1 1CB C 0 1 N N N -19.117 72.118 40.734 -3.042 2.835 8.808 CB1 KT3 5 KT3 CA1 1CA C 0 1 N N S -18.434 72.239 42.059 -1.718 2.288 8.267 CA1 KT3 6 KT3 C1A 1C C 0 1 N N N -19.351 71.932 43.321 -0.568 2.725 9.153 C1A KT3 7 KT3 O11 1OXT O 0 1 N N N -19.973 72.846 43.859 -0.022 3.896 8.731 O11 KT3 8 KT3 O1A 1O O 0 1 N N N -19.448 70.650 43.803 -0.187 2.138 10.157 O1A KT3 9 KT3 N1A 1N N 0 1 N N N -17.320 71.217 42.008 -1.689 0.848 8.239 N1A KT3 10 KT3 C C C 0 1 N N N -15.955 71.465 41.941 -1.453 0.128 7.076 C KT3 11 KT3 O O O 0 1 N N N -15.465 72.577 41.973 -1.248 0.627 5.973 O KT3 12 KT3 C14 C14 C 0 1 Y N N -15.141 70.281 41.758 -1.481 -1.352 7.209 C14 KT3 13 KT3 C15 C15 C 0 1 Y N N -15.757 69.053 41.171 -1.816 -2.113 6.108 C15 KT3 14 KT3 C16 C16 C 0 1 Y N N -15.000 67.874 41.119 -1.842 -3.502 6.232 C16 KT3 15 KT3 C13 C13 C 0 1 Y N N -13.722 70.269 42.264 -1.171 -1.917 8.428 C13 KT3 16 KT3 C12 C12 C 0 1 Y N N -12.934 69.052 42.201 -1.197 -3.306 8.552 C12 KT3 17 KT3 C11 C11 C 0 1 Y N N -13.616 67.805 41.598 -1.532 -4.099 7.454 C11 KT3 18 KT3 C10 C10 C 0 1 N N S -13.049 66.331 41.184 -1.560 -5.584 7.587 C10 KT3 19 KT3 C5 C5 C 0 1 N N N -11.745 65.968 40.331 -0.173 -6.239 7.942 C5 KT3 20 KT3 C6 C6 C 0 1 N N N -12.214 65.996 38.865 0.909 -5.967 6.901 C6 KT3 21 KT3 F2 F2 F 0 1 N N N -12.872 67.137 38.436 1.136 -4.643 6.763 F2 KT3 22 KT3 F1 F1 F 0 1 N N N -13.192 65.092 38.966 0.535 -6.444 5.691 F1 KT3 23 KT3 F3 F3 F 0 1 N N N -11.232 65.633 38.027 2.081 -6.558 7.215 F3 KT3 24 KT3 OA2 OA2 O 0 1 N N N -10.910 65.213 40.666 -0.363 -7.659 8.015 OA2 KT3 25 KT3 OA1 OA1 O 0 1 N N N -10.927 67.331 40.334 0.256 -5.763 9.216 OA1 KT3 26 KT3 C1 C1 C 0 1 N N N -13.534 65.147 42.063 -2.665 -6.080 8.581 C1 KT3 27 KT3 C2 C2 C 0 1 N N N -13.060 65.298 43.662 -4.077 -5.649 8.151 C2 KT3 28 KT3 C3 C3 C 0 1 N N N -13.285 63.905 44.349 -5.161 -6.088 9.143 C3 KT3 29 KT3 C4 C4 C 0 1 Y N N -14.061 64.306 45.561 -6.562 -5.750 8.697 C4 KT3 30 KT3 C7 C7 C 0 1 Y N N -15.451 64.526 46.001 -7.313 -6.613 7.944 C7 KT3 31 KT3 N8 N8 N 0 1 N N N -16.524 64.287 45.180 -6.758 -7.862 7.574 N8 KT3 32 KT3 C9 C9 C 0 1 Y N N -13.179 64.604 46.541 -7.137 -4.553 9.032 C9 KT3 33 KT3 O1 O1 O 0 1 N N N -11.795 64.421 46.693 -6.450 -3.635 9.783 O1 KT3 34 KT3 N3 N3 N 0 1 Y N N -13.564 65.175 48.001 -8.386 -4.206 8.657 N3 KT3 35 KT3 C8 C8 C 0 1 Y N N -14.895 65.335 48.238 -9.035 -5.128 7.921 C8 KT3 36 KT3 N2 N2 N 0 1 N N N -15.348 65.909 49.358 -10.345 -4.799 7.510 N2 KT3 37 KT3 N1 N1 N 0 1 Y N N -15.765 65.034 47.318 -8.567 -6.331 7.535 N1 KT3 38 KT3 OEN 3OE2 O 0 1 N N N ? ? ? -3.354 6.367 9.016 OEN KT3 39 KT3 OED 3OE1 O 0 1 N N N ? ? ? -2.535 7.401 7.167 OED KT3 40 KT3 CD3 3CD C 0 1 N N N ? ? ? -3.471 6.897 7.774 CD3 KT3 41 KT3 CG3 3CG C 0 1 N N N ? ? ? -4.876 6.810 7.233 CG3 KT3 42 KT3 CB3 3CB C 0 1 N N N ? ? ? -5.020 7.315 5.794 CB3 KT3 43 KT3 CA3 3CA C 0 1 N N R ? ? ? -6.411 7.161 5.157 CA3 KT3 44 KT3 C3A 3C C 0 1 N N N ? ? ? -7.461 7.999 5.863 C3A KT3 45 KT3 O3 3O O 0 1 N N N ? ? ? -7.439 9.218 5.977 O3 KT3 46 KT3 O12 3OXT O 0 1 N N N ? ? ? -8.461 7.234 6.376 O12 KT3 47 KT3 N3A 3N N 0 1 N N N ? ? ? -6.859 5.788 5.154 N3A KT3 48 KT3 OEC 2OE1 O 0 1 N N N ? ? ? -5.964 5.201 3.094 OEC KT3 49 KT3 CD2 2CD C 0 1 N N N ? ? ? -6.594 4.916 4.109 CD2 KT3 50 KT3 CG2 2CG C 0 1 N N N ? ? ? -7.155 3.530 4.380 CG2 KT3 51 KT3 CB2 2CB C 0 1 N N N ? ? ? -6.350 2.404 3.726 CB2 KT3 52 KT3 CA2 2CA C 0 1 N N R ? ? ? -4.905 2.322 4.223 CA2 KT3 53 KT3 C2A 2C C 0 1 N N N ? ? ? -4.183 1.171 3.551 C2A KT3 54 KT3 O2 2O O 0 1 N N N ? ? ? -4.188 0.010 3.939 O2 KT3 55 KT3 O13 2OXT O 0 1 N N N ? ? ? -3.470 1.583 2.470 O13 KT3 56 KT3 H2 2H H 0 1 N N N -19.112 74.907 37.536 -5.281 1.258 6.027 H2 KT3 57 KT3 HG11 1HG1 H 0 0 N N N -17.463 72.498 39.435 -4.413 1.372 7.967 HG11 KT3 58 KT3 HG21 1HG2 H 0 0 N N N -18.530 73.953 39.855 -5.147 2.925 8.380 HG21 KT3 59 KT3 HB11 1HB1 H 0 0 N N N -20.142 72.499 40.858 -3.204 2.453 9.825 HB11 KT3 60 KT3 HB21 1HB2 H 0 0 N N N -19.049 71.055 40.459 -2.983 3.927 8.898 HB21 KT3 61 KT3 HA1A 1HA H 0 0 N N N -18.108 73.281 42.197 -1.525 2.614 7.240 HA1A KT3 62 KT3 HXT1 1HXT H 0 0 N N N -20.472 72.502 44.591 0.706 4.243 9.291 HXT1 KT3 63 KT3 H1 1H H 0 1 N N N -17.597 70.256 42.024 -1.913 0.360 9.103 H1 KT3 64 KT3 H15 H15 H 0 1 N N N -16.769 69.073 40.793 -2.060 -1.659 5.151 H15 KT3 65 KT3 H16 H16 H 0 1 N N N -15.454 66.983 40.711 -2.105 -4.112 5.372 H16 KT3 66 KT3 H13 H13 H 0 1 N N N -13.290 71.169 42.675 -0.909 -1.310 9.290 H13 KT3 67 KT3 H12 H12 H 0 1 N N N -11.916 69.020 42.560 -0.954 -3.762 9.509 H12 KT3 68 KT3 H10 H10 H 0 1 N N N -13.555 66.614 40.249 -1.847 -6.035 6.613 H10 KT3 69 KT3 HA2 HA2 H 0 1 N N N -10.351 65.009 39.925 0.501 -8.084 7.883 HA2 KT3 70 KT3 HA1 HA1 H 0 1 N N N -10.764 67.601 41.230 1.223 -5.852 9.262 HA1 KT3 71 KT3 H11 1H1 H 0 1 N N N -14.633 65.114 42.027 -2.654 -7.175 8.651 H11 KT3 72 KT3 H12A 2H1 H 0 0 N N N -13.083 64.226 41.665 -2.453 -5.704 9.588 H12A KT3 73 KT3 H21 1H2 H 0 1 N N N -11.999 65.582 43.718 -4.121 -4.563 8.013 H21 KT3 74 KT3 H22 2H2 H 0 1 N N N -13.645 66.080 44.168 -4.302 -6.101 7.177 H22 KT3 75 KT3 H31 1H3 H 0 1 N N N -13.842 63.206 43.707 -4.961 -5.649 10.129 H31 KT3 76 KT3 H32 2H3 H 0 1 N N N -12.357 63.357 44.570 -5.101 -7.174 9.284 H32 KT3 77 KT3 HN81 1HN8 H 0 0 N N N -17.358 64.229 45.729 -7.373 -8.618 7.362 HN81 KT3 78 KT3 HN82 2HN8 H 0 0 N N N -16.611 65.033 44.520 -5.770 -7.985 7.625 HN82 KT3 79 KT3 HO1 HO1 H 0 1 N N N -11.385 64.380 45.837 -7.071 -3.010 10.183 HO1 KT3 80 KT3 HN21 1HN2 H 0 0 N N N -15.461 65.213 50.067 -11.121 -5.206 7.989 HN21 KT3 81 KT3 HN22 2HN2 H 0 0 N N N -14.693 66.598 49.668 -10.472 -4.243 6.690 HN22 KT3 82 KT3 HE23 3HE2 H 0 0 N N N ? ? ? -2.455 6.413 9.407 HE23 KT3 83 KT3 HG13 3HG1 H 0 0 N N N ? ? ? -5.544 7.351 7.912 HG13 KT3 84 KT3 HG23 3HG2 H 0 0 N N N ? ? ? -5.184 5.759 7.289 HG23 KT3 85 KT3 HB13 3HB1 H 0 0 N N N ? ? ? -4.718 8.369 5.738 HB13 KT3 86 KT3 HB23 3HB2 H 0 0 N N N ? ? ? -4.297 6.762 5.180 HB23 KT3 87 KT3 HA3 3HA H 0 1 N N N ? ? ? -6.368 7.490 4.111 HA3 KT3 88 KT3 HXT3 3HXT H 0 0 N N N ? ? ? -9.167 7.727 6.846 HXT3 KT3 89 KT3 H3 3H H 0 1 N N N ? ? ? -7.391 5.448 5.950 H3 KT3 90 KT3 HG12 2HG1 H 0 0 N N N ? ? ? -8.202 3.493 4.061 HG12 KT3 91 KT3 HG22 2HG2 H 0 0 N N N ? ? ? -7.140 3.387 5.467 HG22 KT3 92 KT3 HB12 2HB1 H 0 0 N N N ? ? ? -6.352 2.564 2.640 HB12 KT3 93 KT3 HB22 2HB2 H 0 0 N N N ? ? ? -6.857 1.445 3.894 HB22 KT3 94 KT3 HA2A 2HA H 0 0 N N N ? ? ? -4.351 3.248 4.042 HA2A KT3 95 KT3 HXT2 2HXT H 0 0 N N N ? ? ? -2.954 0.883 2.017 HXT2 KT3 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KT3 N2A CD1 SING N N 1 KT3 N2A CA2 SING N N 2 KT3 N2A H2 SING N N 3 KT3 CD1 OEB DOUB N N 4 KT3 CD1 CG1 SING N N 5 KT3 CG1 CB1 SING N N 6 KT3 CG1 HG11 SING N N 7 KT3 CG1 HG21 SING N N 8 KT3 CB1 CA1 SING N N 9 KT3 CB1 HB11 SING N N 10 KT3 CB1 HB21 SING N N 11 KT3 CA1 C1A SING N N 12 KT3 CA1 N1A SING N N 13 KT3 CA1 HA1A SING N N 14 KT3 C1A O11 SING N N 15 KT3 C1A O1A DOUB N N 16 KT3 O11 HXT1 SING N N 17 KT3 N1A C SING N N 18 KT3 N1A H1 SING N N 19 KT3 C O DOUB N N 20 KT3 C C14 SING N N 21 KT3 C14 C15 DOUB Y N 22 KT3 C14 C13 SING Y N 23 KT3 C15 C16 SING Y N 24 KT3 C15 H15 SING N N 25 KT3 C16 C11 DOUB Y N 26 KT3 C16 H16 SING N N 27 KT3 C13 C12 DOUB Y N 28 KT3 C13 H13 SING N N 29 KT3 C12 C11 SING Y N 30 KT3 C12 H12 SING N N 31 KT3 C11 C10 SING N N 32 KT3 C10 C5 SING N N 33 KT3 C10 C1 SING N N 34 KT3 C10 H10 SING N N 35 KT3 C5 C6 SING N N 36 KT3 C5 OA2 SING N N 37 KT3 C5 OA1 SING N N 38 KT3 C6 F2 SING N N 39 KT3 C6 F1 SING N N 40 KT3 C6 F3 SING N N 41 KT3 OA2 HA2 SING N N 42 KT3 OA1 HA1 SING N N 43 KT3 C1 C2 SING N N 44 KT3 C1 H11 SING N N 45 KT3 C1 H12A SING N N 46 KT3 C2 C3 SING N N 47 KT3 C2 H21 SING N N 48 KT3 C2 H22 SING N N 49 KT3 C3 C4 SING N N 50 KT3 C3 H31 SING N N 51 KT3 C3 H32 SING N N 52 KT3 C4 C7 DOUB Y N 53 KT3 C4 C9 SING Y N 54 KT3 C7 N8 SING N N 55 KT3 C7 N1 SING Y N 56 KT3 N8 HN81 SING N N 57 KT3 N8 HN82 SING N N 58 KT3 C9 O1 SING N N 59 KT3 C9 N3 DOUB Y N 60 KT3 O1 HO1 SING N N 61 KT3 N3 C8 SING Y N 62 KT3 C8 N2 SING N N 63 KT3 C8 N1 DOUB Y N 64 KT3 N2 HN21 SING N N 65 KT3 N2 HN22 SING N N 66 KT3 OEN CD3 SING N N 67 KT3 OEN HE23 SING N N 68 KT3 OED CD3 DOUB N N 69 KT3 CD3 CG3 SING N N 70 KT3 CG3 CB3 SING N N 71 KT3 CG3 HG13 SING N N 72 KT3 CG3 HG23 SING N N 73 KT3 CB3 CA3 SING N N 74 KT3 CB3 HB13 SING N N 75 KT3 CB3 HB23 SING N N 76 KT3 CA3 C3A SING N N 77 KT3 CA3 N3A SING N N 78 KT3 CA3 HA3 SING N N 79 KT3 C3A O3 DOUB N N 80 KT3 C3A O12 SING N N 81 KT3 O12 HXT3 SING N N 82 KT3 N3A CD2 SING N N 83 KT3 N3A H3 SING N N 84 KT3 OEC CD2 DOUB N N 85 KT3 CD2 CG2 SING N N 86 KT3 CG2 CB2 SING N N 87 KT3 CG2 HG12 SING N N 88 KT3 CG2 HG22 SING N N 89 KT3 CB2 CA2 SING N N 90 KT3 CB2 HB12 SING N N 91 KT3 CB2 HB22 SING N N 92 KT3 CA2 C2A SING N N 93 KT3 CA2 HA2A SING N N 94 KT3 C2A O2 DOUB N N 95 KT3 C2A O13 SING N N 96 KT3 O13 HXT2 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KT3 SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)CCC(C(=O)O)NC(=O)CCC(C(=O)O)NC(=O)c1ccc(cc1)C(C(O)(O)C(F)(F)F)CCCc2c(O)nc(nc2N)N)CCC(=O)O" KT3 SMILES_CANONICAL CACTVS 3.341 "Nc1nc(N)c(CCC[C@@H](c2ccc(cc2)C(=O)N[C@@H](CCC(=O)NC(CCC(=O)NC(CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)C(O)(O)C(F)(F)F)c(O)n1" KT3 SMILES CACTVS 3.341 "Nc1nc(N)c(CCC[CH](c2ccc(cc2)C(=O)N[CH](CCC(=O)NC(CCC(=O)NC(CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)C(O)(O)C(F)(F)F)c(O)n1" KT3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O)O)C(=O)N[C@@H](CCC(=O)N[C@H](CCC(=O)N[C@H](CCC(=O)O)C(=O)O)C(=O)O)C(=O)O" KT3 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O)O)C(=O)NC(CCC(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)C(=O)O" KT3 InChI InChI 1.03 ;InChI=1S/C32H40F3N7O14/c33-32(34,35)31(55,56)17(3-1-2-16-24(36)41-30(37)42-26(16)48)14-4-6-15(7-5-14)25(47)40-20(29(53)54)9-12-22(44)38-18(27(49)50)8-11-21(43)39-19(28(51)52)10-13-23(45)46/h4-7,17-20,55-56H,1-3,8-13H2,(H,38,44)(H,39,43)(H,40,47)(H,45,46)(H,49,50)(H,51,52)(H,53,54)(H5,36,37,41,42,48)/t17-,18?,19?,20-/m0/s1 ; KT3 InChIKey InChI 1.03 DJAOVLPLLJHHPY-FVELJTHGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KT3 "SYSTEMATIC NAME" ACDLabs 10.04 "N-({4-[(1S)-4-(2,4-diamino-6-hydroxypyrimidin-5-yl)-1-(2,2,2-trifluoro-1,1-dihydroxyethyl)butyl]phenyl}carbonyl)-L-gamma-glutamyl-gamma-glutamylglutamic acid" KT3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[[(4R)-4-[[(4S)-4-[[4-[(3S)-6-(2,4-diamino-6-hydroxy-pyrimidin-5-yl)-1,1,1-trifluoro-2,2-dihydroxy-hexan-3-yl]phenyl]carbonylamino]-5-hydroxy-5-oxo-pentanoyl]amino]-5-hydroxy-5-oxo-pentanoyl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KT3 "Create component" 2003-11-18 RCSB KT3 "Modify descriptor" 2011-06-04 RCSB #