data_KTY # _chem_comp.id KTY _chem_comp.name "desferrioxamine B" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H48 N6 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N~4~-{5-[acetyl(hydroxy)amino]pentyl}-N~1~-[5-({4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanoyl}amino)pentyl]-N~1~-hydr oxybutanediamide ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-14 _chem_comp.pdbx_modified_date 2022-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.684 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KTY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6NMH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KTY C4 C1 C 0 1 N N N 11.388 20.640 63.179 -11.268 1.988 0.054 C4 KTY 1 KTY C14 C2 C 0 1 N N N 15.110 12.073 70.515 1.655 -3.298 -0.269 C14 KTY 2 KTY C5 C3 C 0 1 N N N 11.550 19.699 64.361 -10.484 0.945 0.852 C5 KTY 3 KTY C6 C4 C 0 1 N N N 12.680 18.688 64.254 -9.142 0.681 0.166 C6 KTY 4 KTY C11 C5 C 0 1 N N N 12.250 14.279 69.381 -2.781 -3.067 0.285 C11 KTY 5 KTY C7 C6 C 0 1 N N N 13.475 18.587 65.537 -8.358 -0.362 0.965 C7 KTY 6 KTY C8 C7 C 0 1 N N N 13.267 17.472 67.711 -6.209 -1.504 0.837 C8 KTY 7 KTY C9 C8 C 0 1 N N N 13.203 15.982 67.875 -4.887 -1.764 0.162 C9 KTY 8 KTY C10 C9 C 0 1 N N N 11.991 15.549 68.625 -4.103 -2.807 0.960 C10 KTY 9 KTY C12 C10 C 0 1 N N N 13.165 13.364 71.540 -0.632 -4.209 0.157 C12 KTY 10 KTY C13 C11 C 0 1 N N N 14.635 12.973 71.643 0.312 -3.034 0.416 C13 KTY 11 KTY N1 N1 N 0 1 N N N 13.360 22.121 63.689 -13.361 3.251 -0.025 N1 KTY 12 KTY N2 N2 N 0 1 N N N 12.718 17.944 66.594 -7.073 -0.615 0.308 N2 KTY 13 KTY C3 C12 C 0 1 N N N 12.677 21.295 62.665 -12.610 2.252 0.739 C3 KTY 14 KTY N3 N3 N 0 1 N N N 12.943 14.420 70.544 -1.917 -3.957 0.814 N3 KTY 15 KTY C1 C13 C 0 1 N N N 12.946 24.195 62.506 -14.726 3.934 -1.972 C1 KTY 16 KTY C2 C14 C 0 1 N N N 13.547 23.457 63.657 -13.953 2.906 -1.186 C2 KTY 17 KTY O1 O1 O 0 1 N N N 14.189 24.055 64.522 -13.865 1.769 -1.597 O1 KTY 18 KTY O2 O2 O 0 1 N N N 13.871 18.196 68.503 -6.496 -2.095 1.857 O2 KTY 19 KTY O3 O3 O 0 1 N N N 11.885 13.209 68.933 -2.494 -2.476 -0.735 O3 KTY 20 KTY C15 C15 C 0 1 N N N 16.044 10.957 70.946 2.599 -2.122 -0.010 C15 KTY 21 KTY C16 C16 C 0 1 N N N 17.337 10.878 70.151 3.941 -2.386 -0.696 C16 KTY 22 KTY N4 N4 N 0 1 N N N 18.318 11.898 70.512 4.846 -1.261 -0.448 N4 KTY 23 KTY C17 C17 C 0 1 N N N 18.834 12.106 71.735 6.093 -1.274 -0.959 C17 KTY 24 KTY O4 O4 O 0 1 N N N 18.260 11.715 72.755 6.467 -2.217 -1.623 O4 KTY 25 KTY C18 C18 C 0 1 N N N 20.192 12.772 71.808 7.024 -0.116 -0.703 C18 KTY 26 KTY C19 C19 C 0 1 N N N 20.315 14.050 71.000 8.366 -0.380 -1.389 C19 KTY 27 KTY C20 C20 C 0 1 N N N 21.313 13.961 69.870 9.297 0.777 -1.134 C20 KTY 28 KTY O5 O5 O 0 1 N N N 21.952 12.948 69.661 8.923 1.720 -0.469 O5 KTY 29 KTY N5 N5 N 0 1 N N N 21.483 15.083 69.128 10.544 0.765 -1.644 N5 KTY 30 KTY C21 C21 C 0 1 N N N 21.121 15.192 67.705 11.448 1.890 -1.396 C21 KTY 31 KTY C22 C22 C 0 1 N N N 21.683 16.456 67.038 11.963 1.823 0.043 C22 KTY 32 KTY C23 C23 C 0 1 N N N 20.830 17.718 67.151 12.908 2.998 0.302 C23 KTY 33 KTY C24 C24 C 0 1 N N N 21.233 18.819 66.170 13.422 2.931 1.741 C24 KTY 34 KTY C25 C25 C 0 1 N N N 20.082 19.707 65.720 14.367 4.106 2.000 C25 KTY 35 KTY N6 N6 N 0 1 N N N 20.346 21.148 65.782 14.861 4.042 3.382 N6 KTY 36 KTY O6 O6 O 0 1 N N N 22.070 16.200 69.657 10.980 -0.337 -2.421 O6 KTY 37 KTY O7 O7 O 0 1 N N N 13.520 15.617 70.910 -2.252 -4.647 2.004 O7 KTY 38 KTY O8 O8 O 0 1 N N N 13.876 21.428 64.742 -13.465 4.579 0.455 O8 KTY 39 KTY H1 H1 H 0 1 N N N 10.698 21.443 63.479 -10.696 2.915 0.006 H1 KTY 40 KTY H2 H2 H 0 1 N N N 10.947 20.067 62.350 -11.443 1.617 -0.956 H2 KTY 41 KTY H3 H3 H 0 1 N N N 15.638 12.696 69.778 2.093 -4.212 0.131 H3 KTY 42 KTY H4 H4 H 0 1 N N N 14.226 11.618 70.044 1.499 -3.409 -1.342 H4 KTY 43 KTY H5 H5 H 0 1 N N N 11.729 20.311 65.257 -10.309 1.316 1.862 H5 KTY 44 KTY H6 H6 H 0 1 N N N 10.609 19.142 64.480 -11.056 0.018 0.899 H6 KTY 45 KTY H7 H7 H 0 1 N N N 12.253 17.701 64.023 -9.317 0.310 -0.844 H7 KTY 46 KTY H8 H8 H 0 1 N N N 13.355 18.995 63.441 -8.570 1.607 0.119 H8 KTY 47 KTY H9 H9 H 0 1 N N N 14.386 18.001 65.345 -8.183 0.009 1.974 H9 KTY 48 KTY H10 H10 H 0 1 N N N 13.752 19.600 65.864 -8.930 -1.289 1.012 H10 KTY 49 KTY H11 H11 H 0 1 N N N 13.188 15.516 66.878 -5.062 -2.135 -0.848 H11 KTY 50 KTY H12 H12 H 0 1 N N N 14.096 15.647 68.422 -4.315 -0.837 0.114 H12 KTY 51 KTY H13 H13 H 0 1 N N N 11.707 16.339 69.336 -4.675 -3.734 1.008 H13 KTY 52 KTY H14 H14 H 0 1 N N N 11.169 15.383 67.914 -3.928 -2.436 1.970 H14 KTY 53 KTY H15 H15 H 0 1 N N N 12.824 13.725 72.522 -0.788 -4.320 -0.916 H15 KTY 54 KTY H16 H16 H 0 1 N N N 12.581 12.477 71.253 -0.193 -5.123 0.557 H16 KTY 55 KTY H17 H17 H 0 1 N N N 14.788 12.445 72.596 0.468 -2.923 1.489 H17 KTY 56 KTY H18 H18 H 0 1 N N N 15.240 13.892 71.632 -0.126 -2.120 0.016 H18 KTY 57 KTY H19 H19 H 0 1 N N N 11.729 17.850 66.477 -6.843 -0.142 -0.507 H19 KTY 58 KTY H20 H20 H 0 1 N N N 13.366 20.502 62.339 -13.182 1.325 0.787 H20 KTY 59 KTY H21 H21 H 0 1 N N N 12.425 21.938 61.808 -12.436 2.623 1.749 H21 KTY 60 KTY H22 H22 H 0 1 N N N 13.179 25.266 62.595 -14.057 4.433 -2.673 H22 KTY 61 KTY H23 H23 H 0 1 N N N 13.361 23.807 61.564 -15.528 3.442 -2.523 H23 KTY 62 KTY H24 H24 H 0 1 N N N 11.855 24.055 62.511 -15.151 4.669 -1.289 H24 KTY 63 KTY H25 H25 H 0 1 N N N 15.512 10.001 70.834 2.160 -1.209 -0.410 H25 KTY 64 KTY H26 H26 H 0 1 N N N 16.300 11.112 72.005 2.755 -2.011 1.063 H26 KTY 65 KTY H27 H27 H 0 1 N N N 17.095 10.993 69.084 4.380 -3.300 -0.296 H27 KTY 66 KTY H28 H28 H 0 1 N N N 17.788 9.889 70.320 3.786 -2.498 -1.769 H28 KTY 67 KTY H29 H29 H 0 1 N N N 18.636 12.499 69.779 4.547 -0.507 0.084 H29 KTY 68 KTY H30 H30 H 0 1 N N N 20.944 12.059 71.438 6.585 0.798 -1.103 H30 KTY 69 KTY H31 H31 H 0 1 N N N 20.400 13.011 72.861 7.180 -0.005 0.370 H31 KTY 70 KTY H32 H32 H 0 1 N N N 20.627 14.859 71.676 8.805 -1.294 -0.989 H32 KTY 71 KTY H33 H33 H 0 1 N N N 19.329 14.288 70.574 8.210 -0.491 -2.462 H33 KTY 72 KTY H34 H34 H 0 1 N N N 20.024 15.210 67.623 12.291 1.838 -2.086 H34 KTY 73 KTY H35 H35 H 0 1 N N N 21.514 14.312 67.175 10.913 2.827 -1.547 H35 KTY 74 KTY H36 H36 H 0 1 N N N 21.819 16.238 65.968 11.121 1.875 0.733 H36 KTY 75 KTY H37 H37 H 0 1 N N N 22.660 16.670 67.496 12.499 0.886 0.194 H37 KTY 76 KTY H38 H38 H 0 1 N N N 20.925 18.112 68.174 13.750 2.946 -0.388 H38 KTY 77 KTY H39 H39 H 0 1 N N N 19.781 17.447 66.958 12.372 3.935 0.151 H39 KTY 78 KTY H40 H40 H 0 1 N N N 21.671 18.344 65.280 12.580 2.983 2.431 H40 KTY 79 KTY H41 H41 H 0 1 N N N 21.989 19.454 66.656 13.958 1.994 1.892 H41 KTY 80 KTY H42 H42 H 0 1 N N N 19.215 19.492 66.362 15.210 4.054 1.310 H42 KTY 81 KTY H43 H43 H 0 1 N N N 19.840 19.450 64.678 13.831 5.043 1.849 H43 KTY 82 KTY H44 H44 H 0 1 N N N 19.539 21.649 65.470 15.306 3.155 3.566 H44 KTY 83 KTY H45 H45 H 0 1 N N N 20.555 21.408 66.725 15.488 4.808 3.578 H45 KTY 84 KTY H47 H47 H 0 1 N N N 22.271 16.049 70.573 11.888 -0.256 -2.743 H47 KTY 85 KTY H48 H48 H 0 1 N N N 13.956 15.516 71.748 -1.571 -5.263 2.306 H48 KTY 86 KTY H49 H49 H 0 1 N N N 14.328 22.027 65.325 -13.979 5.165 -0.117 H49 KTY 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KTY C1 C2 SING N N 1 KTY C3 C4 SING N N 2 KTY C3 N1 SING N N 3 KTY C4 C5 SING N N 4 KTY C2 N1 SING N N 5 KTY C2 O1 DOUB N N 6 KTY N1 O8 SING N N 7 KTY C6 C5 SING N N 8 KTY C6 C7 SING N N 9 KTY C7 N2 SING N N 10 KTY C25 N6 SING N N 11 KTY C25 C24 SING N N 12 KTY C24 C23 SING N N 13 KTY N2 C8 SING N N 14 KTY C22 C23 SING N N 15 KTY C22 C21 SING N N 16 KTY C21 N5 SING N N 17 KTY C8 C9 SING N N 18 KTY C8 O2 DOUB N N 19 KTY C9 C10 SING N N 20 KTY C10 C11 SING N N 21 KTY O3 C11 DOUB N N 22 KTY N5 O6 SING N N 23 KTY N5 C20 SING N N 24 KTY C11 N3 SING N N 25 KTY O5 C20 DOUB N N 26 KTY C20 C19 SING N N 27 KTY C16 N4 SING N N 28 KTY C16 C15 SING N N 29 KTY N4 C17 SING N N 30 KTY C14 C15 SING N N 31 KTY C14 C13 SING N N 32 KTY N3 O7 SING N N 33 KTY N3 C12 SING N N 34 KTY C19 C18 SING N N 35 KTY C12 C13 SING N N 36 KTY C17 C18 SING N N 37 KTY C17 O4 DOUB N N 38 KTY C4 H1 SING N N 39 KTY C4 H2 SING N N 40 KTY C14 H3 SING N N 41 KTY C14 H4 SING N N 42 KTY C5 H5 SING N N 43 KTY C5 H6 SING N N 44 KTY C6 H7 SING N N 45 KTY C6 H8 SING N N 46 KTY C7 H9 SING N N 47 KTY C7 H10 SING N N 48 KTY C9 H11 SING N N 49 KTY C9 H12 SING N N 50 KTY C10 H13 SING N N 51 KTY C10 H14 SING N N 52 KTY C12 H15 SING N N 53 KTY C12 H16 SING N N 54 KTY C13 H17 SING N N 55 KTY C13 H18 SING N N 56 KTY N2 H19 SING N N 57 KTY C3 H20 SING N N 58 KTY C3 H21 SING N N 59 KTY C1 H22 SING N N 60 KTY C1 H23 SING N N 61 KTY C1 H24 SING N N 62 KTY C15 H25 SING N N 63 KTY C15 H26 SING N N 64 KTY C16 H27 SING N N 65 KTY C16 H28 SING N N 66 KTY N4 H29 SING N N 67 KTY C18 H30 SING N N 68 KTY C18 H31 SING N N 69 KTY C19 H32 SING N N 70 KTY C19 H33 SING N N 71 KTY C21 H34 SING N N 72 KTY C21 H35 SING N N 73 KTY C22 H36 SING N N 74 KTY C22 H37 SING N N 75 KTY C23 H38 SING N N 76 KTY C23 H39 SING N N 77 KTY C24 H40 SING N N 78 KTY C24 H41 SING N N 79 KTY C25 H42 SING N N 80 KTY C25 H43 SING N N 81 KTY N6 H44 SING N N 82 KTY N6 H45 SING N N 83 KTY O6 H47 SING N N 84 KTY O7 H48 SING N N 85 KTY O8 H49 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KTY SMILES ACDLabs 12.01 "C(CCCNC(CCC(N(CCCCCNC(CCC(=O)N(O)CCCCCN)=O)O)=O)=O)CN(O)C(C)=O" KTY InChI InChI 1.03 "InChI=1S/C25H48N6O8/c1-21(32)29(37)18-9-3-6-16-27-22(33)12-14-25(36)31(39)20-10-4-7-17-28-23(34)11-13-24(35)30(38)19-8-2-5-15-26/h37-39H,2-20,26H2,1H3,(H,27,33)(H,28,34)" KTY InChIKey InChI 1.03 UBQYURCVBFRUQT-UHFFFAOYSA-N KTY SMILES_CANONICAL CACTVS 3.385 "CC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCN" KTY SMILES CACTVS 3.385 "CC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCN" KTY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N(CCCCCNC(=O)CCC(=O)N(CCCCCNC(=O)CCC(=O)N(CCCCCN)O)O)O" KTY SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)N(CCCCCNC(=O)CCC(=O)N(CCCCCNC(=O)CCC(=O)N(CCCCCN)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KTY "SYSTEMATIC NAME" ACDLabs 12.01 "N~4~-{5-[acetyl(hydroxy)amino]pentyl}-N~1~-[5-({4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanoyl}amino)pentyl]-N~1~-hydroxybutanediamide" KTY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}'-(5-azanylpentyl)-~{N}-[5-[[4-[5-[ethanoyl(oxidanyl)amino]pentylamino]-4-oxidanylidene-butanoyl]-oxidanyl-amino]pentyl]-~{N}'-oxidanyl-butanediamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KTY "Create component" 2019-01-14 RCSB KTY "Modify synonyms" 2020-06-05 PDBE KTY "Initial release" 2022-12-07 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KTY _pdbx_chem_comp_synonyms.name "N~4~-{5-[acetyl(hydroxy)amino]pentyl}-N~1~-[5-({4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanoyl}amino)pentyl]-N~1~-hydroxybutanediamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #