data_KV4 # _chem_comp.id KV4 _chem_comp.name "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butyl)-5'-thioadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 Cl N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SGC8158 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-18 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 555.091 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KV4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6NPG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KV4 C8 C1 C 0 1 N N S 33.048 17.446 68.385 5.171 2.122 -0.134 C8 KV4 1 KV4 C13 C2 C 0 1 N N N 30.526 15.314 63.099 -2.353 0.556 1.820 C13 KV4 2 KV4 C12 C3 C 0 1 N N N 30.025 16.748 63.264 -1.362 0.897 0.705 C12 KV4 3 KV4 C11 C4 C 0 1 N N N 31.111 17.729 63.726 0.042 1.039 1.297 C11 KV4 4 KV4 C10 C5 C 0 1 N N N 30.955 18.197 65.165 1.033 1.380 0.183 C10 KV4 5 KV4 C9 C6 C 0 1 N N N 32.981 17.195 66.887 3.713 1.947 -0.565 C9 KV4 6 KV4 C14 C7 C 0 1 N N N 29.880 14.645 60.836 -4.681 0.092 2.295 C14 KV4 7 KV4 C2 C8 C 0 1 Y N N 35.491 21.126 69.832 8.901 -0.937 -0.039 C2 KV4 8 KV4 C7 C9 C 0 1 N N S 31.809 18.013 69.084 6.024 2.566 -1.338 C7 KV4 9 KV4 C6 C10 C 0 1 N N R 32.155 19.494 69.255 7.103 1.464 -1.466 C6 KV4 10 KV4 C5 C11 C 0 1 N N R 33.658 19.414 69.501 7.094 0.835 -0.049 C5 KV4 11 KV4 C4 C12 C 0 1 Y N N 34.370 21.307 67.963 6.827 -1.670 -0.189 C4 KV4 12 KV4 C3 C13 C 0 1 Y N N 36.069 22.063 68.988 8.888 -2.340 -0.114 C3 KV4 13 KV4 N5 N1 N 0 1 N N N 30.976 15.029 61.732 -3.701 0.420 1.251 N5 KV4 14 KV4 S S1 S 0 1 N N N 32.524 18.685 65.953 2.698 1.548 0.884 S KV4 15 KV4 O1 O1 O 0 1 N N N 31.643 17.354 70.332 6.631 3.833 -1.081 O1 KV4 16 KV4 O O2 O 0 1 N N N 31.477 20.062 70.374 8.380 2.032 -1.763 O KV4 17 KV4 O2 O3 O 0 1 N N N 34.132 18.343 68.707 5.700 0.867 0.325 O2 KV4 18 KV4 N4 N2 N 0 1 Y N N 34.418 20.613 69.145 7.588 -0.543 -0.093 N4 KV4 19 KV4 N2 N3 N 0 1 Y N N 35.909 20.784 71.057 10.067 -0.306 0.056 N2 KV4 20 KV4 C1 C14 C 0 1 Y N N 36.987 21.487 71.406 11.196 -0.983 0.079 C1 KV4 21 KV4 N1 N4 N 0 1 Y N N 37.676 22.386 70.685 11.234 -2.301 0.011 N1 KV4 22 KV4 N3 N5 N 0 1 Y N N 35.338 22.183 67.815 7.592 -2.723 -0.203 N3 KV4 23 KV4 C C15 C 0 1 Y N N 37.262 22.671 69.431 10.119 -3.017 -0.085 C KV4 24 KV4 N N6 N 0 1 N N N 38.099 23.334 68.625 10.169 -4.399 -0.156 N KV4 25 KV4 H1 H1 H 0 1 N N N 33.263 16.477 68.860 5.237 2.865 0.661 H1 KV4 26 KV4 H2 H2 H 0 1 N N N 29.708 14.623 63.352 -2.061 -0.383 2.291 H2 KV4 27 KV4 H3 H3 H 0 1 N N N 31.368 15.153 63.788 -2.351 1.352 2.564 H3 KV4 28 KV4 H4 H4 H 0 1 N N N 29.634 17.093 62.296 -1.363 0.101 -0.039 H4 KV4 29 KV4 H5 H5 H 0 1 N N N 29.215 16.750 64.008 -1.654 1.836 0.234 H5 KV4 30 KV4 H6 H6 H 0 1 N N N 32.088 17.233 63.628 0.044 1.835 2.041 H6 KV4 31 KV4 H7 H7 H 0 1 N N N 31.080 18.612 63.071 0.334 0.100 1.768 H7 KV4 32 KV4 H8 H8 H 0 1 N N N 30.277 19.063 65.177 1.031 0.584 -0.562 H8 KV4 33 KV4 H9 H9 H 0 1 N N N 30.513 17.377 65.750 0.741 2.319 -0.289 H9 KV4 34 KV4 H10 H10 H 0 1 N N N 32.232 16.413 66.693 3.354 2.871 -1.018 H10 KV4 35 KV4 H11 H11 H 0 1 N N N 33.967 16.851 66.542 3.644 1.136 -1.291 H11 KV4 36 KV4 H12 H12 H 0 1 N N N 29.620 13.703 61.341 -4.405 -0.850 2.769 H12 KV4 37 KV4 H13 H13 H 0 1 N N N 29.176 15.433 61.143 -4.695 0.885 3.043 H13 KV4 38 KV4 H15 H15 H 0 1 N N N 30.924 17.901 68.440 5.415 2.610 -2.241 H15 KV4 39 KV4 H16 H16 H 0 1 N N N 31.947 20.045 68.326 6.821 0.728 -2.219 H16 KV4 40 KV4 H17 H17 H 0 1 N N N 33.821 19.188 70.565 7.690 1.434 0.640 H17 KV4 41 KV4 H18 H18 H 0 1 N N N 33.604 21.147 67.219 5.749 -1.687 -0.245 H18 KV4 42 KV4 H19 H19 H 0 1 N N N 31.638 14.281 61.764 -3.714 -0.268 0.513 H19 KV4 43 KV4 H21 H21 H 0 1 N N N 30.876 17.699 70.773 7.180 4.161 -1.807 H21 KV4 44 KV4 H22 H22 H 0 1 N N N 31.711 20.979 70.454 8.410 2.515 -2.601 H22 KV4 45 KV4 H23 H23 H 0 1 N N N 37.356 21.309 72.405 12.126 -0.439 0.157 H23 KV4 46 KV4 H24 H24 H 0 1 N N N 38.951 23.524 69.112 9.348 -4.911 -0.226 H24 KV4 47 KV4 H25 H25 H 0 1 N N N 38.294 22.778 67.817 11.025 -4.855 -0.134 H25 KV4 48 KV4 C15 C16 C 0 1 Y N N ? ? ? -6.049 -0.040 1.676 C15 KV4 49 KV4 C16 C17 C 0 1 Y N N ? ? ? -6.478 -1.268 1.208 C16 KV4 50 KV4 C17 C27 C 0 1 Y N N ? ? ? -7.730 -1.394 0.640 C17 KV4 51 KV4 C18 C18 C 0 1 Y N N ? ? ? -8.561 -0.280 0.538 C18 KV4 52 KV4 C19 C19 C 0 1 Y N N ? ? ? -8.123 0.955 1.010 C19 KV4 53 KV4 C20 C20 C 0 1 Y N N ? ? ? -6.872 1.068 1.582 C20 KV4 54 KV4 C21 C21 C 0 1 Y N N ? ? ? -9.907 -0.409 -0.073 C21 KV4 55 KV4 C22 C22 C 0 1 Y N N ? ? ? -10.738 0.705 -0.175 C22 KV4 56 KV4 C23 C23 C 0 1 Y N N ? ? ? -11.989 0.580 -0.744 C23 KV4 57 KV4 C24 C24 C 0 1 Y N N ? ? ? -12.419 -0.650 -1.213 C24 KV4 58 KV4 C25 C25 C 0 1 Y N N ? ? ? -11.597 -1.759 -1.114 C25 KV4 59 KV4 C26 C26 C 0 1 Y N N ? ? ? -10.342 -1.643 -0.552 C26 KV4 60 KV4 CL1 CL1 CL 0 0 N N N ? ? ? -13.994 -0.800 -1.928 CL1 KV4 61 KV4 H14 H14 H 0 1 N N N ? ? ? -5.834 -2.131 1.288 H14 KV4 62 KV4 H20 H20 H 0 1 N N N ? ? ? -8.064 -2.354 0.275 H20 KV4 63 KV4 H26 H26 H 0 1 N N N ? ? ? -8.763 1.822 0.933 H26 KV4 64 KV4 H27 H27 H 0 1 N N N ? ? ? -6.531 2.025 1.949 H27 KV4 65 KV4 H28 H28 H 0 1 N N N ? ? ? -10.404 1.664 0.191 H28 KV4 66 KV4 H29 H29 H 0 1 N N N ? ? ? -12.634 1.443 -0.823 H29 KV4 67 KV4 H30 H30 H 0 1 N N N ? ? ? -11.937 -2.716 -1.481 H30 KV4 68 KV4 H31 H31 H 0 1 N N N ? ? ? -9.702 -2.510 -0.475 H31 KV4 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KV4 C14 N5 SING N N 1 KV4 N5 C13 SING N N 2 KV4 C13 C12 SING N N 3 KV4 C12 C11 SING N N 4 KV4 C11 C10 SING N N 5 KV4 C10 S SING N N 6 KV4 S C9 SING N N 7 KV4 C9 C8 SING N N 8 KV4 N3 C4 DOUB Y N 9 KV4 N3 C3 SING Y N 10 KV4 C4 N4 SING Y N 11 KV4 C8 O2 SING N N 12 KV4 C8 C7 SING N N 13 KV4 N C SING N N 14 KV4 O2 C5 SING N N 15 KV4 C3 C DOUB Y N 16 KV4 C3 C2 SING Y N 17 KV4 C7 C6 SING N N 18 KV4 C7 O1 SING N N 19 KV4 N4 C5 SING N N 20 KV4 N4 C2 SING Y N 21 KV4 C6 C5 SING N N 22 KV4 C6 O SING N N 23 KV4 C N1 SING Y N 24 KV4 C2 N2 DOUB Y N 25 KV4 N1 C1 DOUB Y N 26 KV4 N2 C1 SING Y N 27 KV4 C8 H1 SING N N 28 KV4 C13 H2 SING N N 29 KV4 C13 H3 SING N N 30 KV4 C12 H4 SING N N 31 KV4 C12 H5 SING N N 32 KV4 C11 H6 SING N N 33 KV4 C11 H7 SING N N 34 KV4 C10 H8 SING N N 35 KV4 C10 H9 SING N N 36 KV4 C9 H10 SING N N 37 KV4 C9 H11 SING N N 38 KV4 C14 H12 SING N N 39 KV4 C14 H13 SING N N 40 KV4 C7 H15 SING N N 41 KV4 C6 H16 SING N N 42 KV4 C5 H17 SING N N 43 KV4 C4 H18 SING N N 44 KV4 N5 H19 SING N N 45 KV4 O1 H21 SING N N 46 KV4 O H22 SING N N 47 KV4 C1 H23 SING N N 48 KV4 N H24 SING N N 49 KV4 N H25 SING N N 50 KV4 C14 C15 SING N N 51 KV4 C15 C16 SING Y N 52 KV4 C16 C17 DOUB Y N 53 KV4 C17 C18 SING Y N 54 KV4 C18 C19 DOUB Y N 55 KV4 C19 C20 SING Y N 56 KV4 C20 C15 DOUB Y N 57 KV4 C18 C21 SING N N 58 KV4 C21 C22 SING Y N 59 KV4 C22 C23 DOUB Y N 60 KV4 C23 C24 SING Y N 61 KV4 C24 C25 DOUB Y N 62 KV4 C25 C26 SING Y N 63 KV4 C26 C21 DOUB Y N 64 KV4 C24 CL1 SING N N 65 KV4 C16 H14 SING N N 66 KV4 C17 H20 SING N N 67 KV4 C19 H26 SING N N 68 KV4 C20 H27 SING N N 69 KV4 C22 H28 SING N N 70 KV4 C23 H29 SING N N 71 KV4 C25 H30 SING N N 72 KV4 C26 H31 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KV4 SMILES ACDLabs 12.01 "C1(OC(C(C1O)O)n3c2ncnc(c2nc3)N)CSCCCCNCc4ccc(cc4)c5ccc(cc5)Cl" KV4 InChI InChI 1.03 "InChI=1S/C27H31ClN6O3S/c28-20-9-7-19(8-10-20)18-5-3-17(4-6-18)13-30-11-1-2-12-38-14-21-23(35)24(36)27(37-21)34-16-33-22-25(29)31-15-32-26(22)34/h3-10,15-16,21,23-24,27,30,35-36H,1-2,11-14H2,(H2,29,31,32)/t21-,23-,24-,27-/m1/s1" KV4 InChIKey InChI 1.03 MOBXZFNRPCKUOV-VBHAUSMQSA-N KV4 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCCCNCc4ccc(cc4)c5ccc(Cl)cc5)[C@@H](O)[C@H]3O" KV4 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCCCNCc4ccc(cc4)c5ccc(Cl)cc5)[CH](O)[CH]3O" KV4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1CNCCCCSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)c5ccc(cc5)Cl" KV4 SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1CNCCCCSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)c5ccc(cc5)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KV4 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-4-yl)methyl]amino}butyl)-5'-thioadenosine" KV4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[4-[[4-(4-chlorophenyl)phenyl]methylamino]butylsulfanylmethyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KV4 "Create component" 2019-01-18 RCSB KV4 "Initial release" 2019-01-30 RCSB KV4 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KV4 _pdbx_chem_comp_synonyms.name SGC8158 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##