data_KV5 # _chem_comp.id KV5 _chem_comp.name "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-29 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KV5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6S4O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KV5 C4 C1 C 0 1 Y N N 35.744 24.218 30.285 -1.188 1.397 -0.047 C4 KV5 1 KV5 C6 C2 C 0 1 Y N N 36.088 24.820 31.573 -2.583 0.910 -0.076 C6 KV5 2 KV5 C8 C3 C 0 1 Y N N 37.727 25.770 33.081 -4.166 -0.904 -0.020 C8 KV5 3 KV5 N3 N1 N 0 1 Y N N 36.641 23.821 29.352 -0.795 2.702 -0.116 N3 KV5 4 KV5 C2 C4 C 0 1 Y N N 35.950 23.302 28.326 0.572 2.712 -0.056 C2 KV5 5 KV5 "O5'" O1 O 0 1 N N N 33.322 21.477 28.044 2.725 0.185 -1.018 "O5'" KV5 6 KV5 "C5'" C5 C 0 1 N N R 32.180 20.940 27.348 4.071 -0.293 -1.043 "C5'" KV5 7 KV5 "C4'" C6 C 0 1 N N S 32.363 21.113 25.827 4.308 -1.210 0.161 "C4'" KV5 8 KV5 "C3'" C7 C 0 1 N N R 32.660 22.556 25.460 4.007 -0.437 1.448 "C3'" KV5 9 KV5 "C2'" C8 C 0 1 N N R 33.793 23.124 26.321 2.570 0.089 1.392 "C2'" KV5 10 KV5 "C1'" C9 C 0 1 N N S 33.509 22.870 27.802 2.401 0.956 0.141 "C1'" KV5 11 KV5 C1 C10 C 0 1 Y N N 34.640 23.355 28.655 0.973 1.428 0.047 C1 KV5 12 KV5 N5 N2 N 0 1 Y N N 34.515 23.915 29.878 -0.113 0.647 0.055 N5 KV5 13 KV5 "O2'" O2 O 0 1 N N N 33.958 24.537 26.126 2.302 0.873 2.556 "O2'" KV5 14 KV5 "O3'" O3 O 0 1 N N N 33.003 22.623 24.074 4.154 -1.306 2.573 "O3'" KV5 15 KV5 "O4'" O4 O 0 1 N N N 31.179 20.706 25.147 5.669 -1.645 0.170 "O4'" KV5 16 KV5 "C6'" C11 C 0 1 N N N 32.043 19.491 27.772 4.311 -1.076 -2.335 "C6'" KV5 17 KV5 "O6'" O5 O 0 1 N N N 33.079 18.659 27.225 4.204 -0.193 -3.454 "O6'" KV5 18 KV5 C11 C12 C 0 1 Y N N 35.107 24.941 32.556 -3.641 1.829 -0.188 C11 KV5 19 KV5 C10 C13 C 0 1 Y N N 35.420 25.458 33.780 -4.931 1.407 -0.216 C10 KV5 20 KV5 C9 C14 C 0 1 Y N N 36.731 25.892 34.078 -5.224 0.034 -0.133 C9 KV5 21 KV5 C7 C15 C 0 1 Y N N 37.371 25.219 31.835 -2.839 -0.449 0.003 C7 KV5 22 KV5 C15 C16 C 0 1 Y N N 37.093 26.440 35.336 -6.550 -0.427 -0.155 C15 KV5 23 KV5 C14 C17 C 0 1 Y N N 38.369 26.844 35.579 -6.803 -1.762 -0.068 C14 KV5 24 KV5 C13 C18 C 0 1 Y N N 39.354 26.733 34.584 -5.764 -2.684 0.044 C13 KV5 25 KV5 C12 C19 C 0 1 Y N N 39.042 26.210 33.369 -4.465 -2.275 0.069 C12 KV5 26 KV5 H1 H1 H 0 1 N N N 37.636 23.900 29.416 -1.376 3.475 -0.193 H1 KV5 27 KV5 H2 H2 H 0 1 N N N 36.364 22.914 27.407 1.209 3.583 -0.089 H2 KV5 28 KV5 H3 H3 H 0 1 N N N 31.273 21.483 27.651 4.758 0.552 -0.996 H3 KV5 29 KV5 H4 H4 H 0 1 N N N 33.210 20.489 25.508 3.649 -2.076 0.094 H4 KV5 30 KV5 H5 H5 H 0 1 N N N 31.755 23.154 25.645 4.699 0.401 1.540 H5 KV5 31 KV5 H6 H6 H 0 1 N N N 34.724 22.604 26.053 1.876 -0.751 1.350 H6 KV5 32 KV5 H7 H7 H 0 1 N N N 32.597 23.420 28.078 3.066 1.817 0.203 H7 KV5 33 KV5 H9 H9 H 0 1 N N N 34.667 24.852 26.674 2.395 0.388 3.387 H9 KV5 34 KV5 H10 H10 H 0 1 N N N 33.190 23.524 23.837 3.979 -0.881 3.424 H10 KV5 35 KV5 H11 H11 H 0 1 N N N 30.981 19.803 25.368 5.890 -2.230 0.907 H11 KV5 36 KV5 H12 H12 H 0 1 N N N 31.069 19.113 27.429 5.309 -1.515 -2.314 H12 KV5 37 KV5 H13 H13 H 0 1 N N N 32.091 19.438 28.870 3.567 -1.867 -2.424 H13 KV5 38 KV5 H14 H14 H 0 1 N N N 32.953 17.763 27.516 4.345 -0.622 -4.309 H14 KV5 39 KV5 H15 H15 H 0 1 N N N 34.095 24.625 32.348 -3.424 2.885 -0.253 H15 KV5 40 KV5 H16 H16 H 0 1 N N N 34.651 25.537 34.534 -5.732 2.126 -0.303 H16 KV5 41 KV5 H17 H17 H 0 1 N N N 38.126 25.109 31.070 -2.023 -1.152 0.084 H17 KV5 42 KV5 H18 H18 H 0 1 N N N 36.346 26.538 36.110 -7.367 0.275 -0.241 H18 KV5 43 KV5 H19 H19 H 0 1 N N N 38.627 27.253 36.545 -7.824 -2.112 -0.086 H19 KV5 44 KV5 H20 H20 H 0 1 N N N 40.362 27.064 34.785 -5.991 -3.737 0.112 H20 KV5 45 KV5 H21 H21 H 0 1 N N N 39.808 26.129 32.612 -3.670 -3.000 0.155 H21 KV5 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KV5 "O3'" "C3'" SING N N 1 KV5 "O4'" "C4'" SING N N 2 KV5 "C3'" "C4'" SING N N 3 KV5 "C3'" "C2'" SING N N 4 KV5 "C4'" "C5'" SING N N 5 KV5 "O2'" "C2'" SING N N 6 KV5 "C2'" "C1'" SING N N 7 KV5 "O6'" "C6'" SING N N 8 KV5 "C5'" "C6'" SING N N 9 KV5 "C5'" "O5'" SING N N 10 KV5 "C1'" "O5'" SING N N 11 KV5 "C1'" C1 SING N N 12 KV5 C2 C1 DOUB Y N 13 KV5 C2 N3 SING Y N 14 KV5 C1 N5 SING Y N 15 KV5 N3 C4 SING Y N 16 KV5 N5 C4 DOUB Y N 17 KV5 C4 C6 SING N N 18 KV5 C6 C7 DOUB Y N 19 KV5 C6 C11 SING Y N 20 KV5 C7 C8 SING Y N 21 KV5 C11 C10 DOUB Y N 22 KV5 C8 C12 DOUB Y N 23 KV5 C8 C9 SING Y N 24 KV5 C12 C13 SING Y N 25 KV5 C10 C9 SING Y N 26 KV5 C9 C15 DOUB Y N 27 KV5 C13 C14 DOUB Y N 28 KV5 C15 C14 SING Y N 29 KV5 N3 H1 SING N N 30 KV5 C2 H2 SING N N 31 KV5 "C5'" H3 SING N N 32 KV5 "C4'" H4 SING N N 33 KV5 "C3'" H5 SING N N 34 KV5 "C2'" H6 SING N N 35 KV5 "C1'" H7 SING N N 36 KV5 "O2'" H9 SING N N 37 KV5 "O3'" H10 SING N N 38 KV5 "O4'" H11 SING N N 39 KV5 "C6'" H12 SING N N 40 KV5 "C6'" H13 SING N N 41 KV5 "O6'" H14 SING N N 42 KV5 C11 H15 SING N N 43 KV5 C10 H16 SING N N 44 KV5 C7 H17 SING N N 45 KV5 C15 H18 SING N N 46 KV5 C14 H19 SING N N 47 KV5 C13 H20 SING N N 48 KV5 C12 H21 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KV5 InChI InChI 1.03 "InChI=1S/C19H20N2O5/c22-9-14-15(23)16(24)17(25)18(26-14)13-8-20-19(21-13)12-6-5-10-3-1-2-4-11(10)7-12/h1-8,14-18,22-25H,9H2,(H,20,21)/t14-,15-,16+,17-,18+/m1/s1" KV5 InChIKey InChI 1.03 VRUXFQSZTNCMBM-SFFUCWETSA-N KV5 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)c2c[nH]c(n2)c3ccc4ccccc4c3" KV5 SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)c2c[nH]c(n2)c3ccc4ccccc4c3" KV5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)c3[nH]cc(n3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O" KV5 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)c3[nH]cc(n3)C4C(C(C(C(O4)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id KV5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-(2-naphthalen-2-yl-1~{H}-imidazol-4-yl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KV5 "Create component" 2019-06-29 EBI KV5 "Initial release" 2020-02-19 RCSB ##