data_KVJ
#
_chem_comp.id KVJ
_chem_comp.name "(4S,5R)-3-[2'-amino-2-(morpholin-4-yl)-4'-(trifluoromethyl)[4,5'-bipyrimidin]-6-yl]-4-(hydroxymethyl)-5-methyl-1,3-oxazolidin-2-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H20 F3 N7 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-16
_chem_comp.pdbx_modified_date 2022-05-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.391
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code KVJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TZ7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KVJ C1 C1 C 0 1 N N R 0.230 5.665 -17.615 5.034 2.007 0.146 C1 KVJ 1
KVJ C2 C2 C 0 1 N N N -0.325 6.595 -19.680 2.869 2.664 0.458 C2 KVJ 2
KVJ C3 C3 C 0 1 N N S -0.626 6.911 -17.351 4.109 0.776 0.091 C3 KVJ 3
KVJ O1 O1 O 0 1 N N N -0.360 6.713 -20.877 1.911 3.386 0.649 O1 KVJ 4
KVJ O2 O2 O 0 1 N N N -1.662 6.492 -15.191 3.423 -1.103 -1.265 O2 KVJ 5
KVJ O3 O3 O 0 1 N N N -3.427 12.775 -14.732 -0.049 -5.427 1.039 O3 KVJ 6
KVJ C11 C4 C 0 1 N N N -4.105 12.966 -15.969 -0.647 -4.901 -0.148 C11 KVJ 7
KVJ C12 C5 C 0 1 N N N -3.216 12.649 -17.145 -0.777 -3.381 -0.018 C12 KVJ 8
KVJ C13 C6 C 0 1 Y N N -3.318 10.623 -21.642 -2.135 1.135 0.577 C13 KVJ 9
KVJ C14 C7 C 0 1 Y N N -4.613 11.110 -21.650 -2.419 2.026 1.617 C14 KVJ 10
KVJ C15 C8 C 0 1 Y N N -4.520 11.502 -23.887 -4.541 2.304 0.768 C15 KVJ 11
KVJ C16 C9 C 0 1 Y N N -2.656 10.621 -22.886 -3.136 0.874 -0.364 C16 KVJ 12
KVJ C17 C10 C 0 1 N N N -1.230 10.167 -23.109 -2.881 -0.073 -1.508 C17 KVJ 13
KVJ N N1 N 0 1 N N N -0.878 7.399 -18.722 2.766 1.337 0.304 N KVJ 14
KVJ C C11 C 0 1 N N N -0.314 4.361 -17.083 5.768 2.187 -1.184 C KVJ 15
KVJ O O4 O 0 1 N N N 0.323 5.570 -19.072 4.124 3.121 0.382 O KVJ 16
KVJ C10 C12 C 0 1 N N N -3.000 11.421 -14.620 1.245 -4.885 1.321 C10 KVJ 17
KVJ C4 C13 C 0 1 N N N -1.909 6.614 -16.585 4.198 0.098 -1.278 C4 KVJ 18
KVJ C5 C14 C 0 1 Y N N -1.600 8.590 -18.979 1.581 0.609 0.339 C5 KVJ 19
KVJ C6 C15 C 0 1 Y N N -2.074 8.932 -20.241 0.355 1.261 0.439 C6 KVJ 20
KVJ C7 C16 C 0 1 Y N N -2.737 10.146 -20.353 -0.805 0.489 0.471 C7 KVJ 21
KVJ C8 C17 C 0 1 Y N N -2.449 10.515 -18.116 0.482 -1.421 0.312 C8 KVJ 22
KVJ C9 C18 C 0 1 N N N -2.064 11.041 -15.738 1.134 -3.365 1.466 C9 KVJ 23
KVJ F F1 F 0 1 N N N -0.763 10.546 -24.295 -3.957 -0.027 -2.400 F KVJ 24
KVJ F1 F2 F 0 1 N N N -0.393 10.663 -22.199 -1.708 0.301 -2.171 F1 KVJ 25
KVJ F2 F3 F 0 1 N N N -1.111 8.841 -23.071 -2.742 -1.375 -1.013 F2 KVJ 26
KVJ N1 N2 N 0 1 Y N N -2.930 10.952 -19.297 -0.702 -0.838 0.406 N1 KVJ 27
KVJ N2 N3 N 0 1 Y N N -1.775 9.368 -17.906 1.605 -0.719 0.273 N2 KVJ 28
KVJ N3 N4 N 0 1 N N N -2.711 11.279 -17.029 0.550 -2.802 0.240 N3 KVJ 29
KVJ N4 N5 N 0 1 Y N N -5.238 11.556 -22.743 -3.615 2.581 1.677 N4 KVJ 30
KVJ N5 N6 N 0 1 N N N -5.118 11.921 -25.005 -5.781 2.906 0.867 N5 KVJ 31
KVJ N6 N7 N 0 1 Y N N -3.249 11.052 -24.004 -4.308 1.469 -0.235 N6 KVJ 32
KVJ H1 H1 H 0 1 N N N 1.232 5.832 -17.193 5.746 1.913 0.965 H1 KVJ 33
KVJ H2 H2 H 0 1 N N N -0.030 7.648 -16.793 4.362 0.072 0.883 H2 KVJ 34
KVJ H3 H3 H 0 1 N N N -2.477 6.307 -14.739 3.434 -1.586 -2.103 H3 KVJ 35
KVJ H4 H4 H 0 1 N N N -4.430 14.015 -16.040 -0.021 -5.141 -1.008 H4 KVJ 36
KVJ H5 H5 H 0 1 N N N -4.985 12.307 -15.999 -1.635 -5.341 -0.283 H5 KVJ 37
KVJ H6 H6 H 0 1 N N N -2.369 13.350 -17.162 -1.179 -2.970 -0.943 H6 KVJ 38
KVJ H7 H7 H 0 1 N N N -3.793 12.748 -18.076 -1.445 -3.143 0.809 H7 KVJ 39
KVJ H8 H8 H 0 1 N N N -5.152 11.131 -20.714 -1.670 2.256 2.360 H8 KVJ 40
KVJ H9 H9 H 0 1 N N N -0.391 4.415 -15.987 5.041 2.325 -1.985 H9 KVJ 41
KVJ H10 H10 H 0 1 N N N -1.310 4.177 -17.511 6.416 3.061 -1.126 H10 KVJ 42
KVJ H11 H11 H 0 1 N N N 0.363 3.540 -17.363 6.370 1.301 -1.389 H11 KVJ 43
KVJ H12 H12 H 0 1 N N N -3.882 10.764 -14.654 1.624 -5.313 2.249 H12 KVJ 44
KVJ H13 H13 H 0 1 N N N -2.481 11.289 -13.659 1.926 -5.125 0.504 H13 KVJ 45
KVJ H14 H14 H 0 1 N N N -2.624 7.433 -16.752 3.811 0.772 -2.043 H14 KVJ 46
KVJ H15 H15 H 0 1 N N N -2.338 5.672 -16.957 5.238 -0.142 -1.497 H15 KVJ 47
KVJ H16 H16 H 0 1 N N N -1.933 8.284 -21.093 0.304 2.339 0.490 H16 KVJ 48
KVJ H17 H17 H 0 1 N N N -1.804 9.976 -15.651 0.496 -3.126 2.317 H17 KVJ 49
KVJ H18 H18 H 0 1 N N N -1.149 11.648 -15.671 2.126 -2.942 1.625 H18 KVJ 50
KVJ H19 H19 H 0 1 N N N -4.489 11.824 -25.776 -5.964 3.522 1.594 H19 KVJ 51
KVJ H20 H20 H 0 1 N N N -5.936 11.371 -25.171 -6.467 2.713 0.210 H20 KVJ 52
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KVJ N5 C15 SING N N 1
KVJ F C17 SING N N 2
KVJ N6 C15 DOUB Y N 3
KVJ N6 C16 SING Y N 4
KVJ C15 N4 SING Y N 5
KVJ C17 F2 SING N N 6
KVJ C17 C16 SING N N 7
KVJ C17 F1 SING N N 8
KVJ C16 C13 DOUB Y N 9
KVJ N4 C14 DOUB Y N 10
KVJ C14 C13 SING Y N 11
KVJ C13 C7 SING N N 12
KVJ O1 C2 DOUB N N 13
KVJ C7 C6 DOUB Y N 14
KVJ C7 N1 SING Y N 15
KVJ C6 C5 SING Y N 16
KVJ C2 O SING N N 17
KVJ C2 N SING N N 18
KVJ N1 C8 DOUB Y N 19
KVJ O C1 SING N N 20
KVJ C5 N SING N N 21
KVJ C5 N2 DOUB Y N 22
KVJ N C3 SING N N 23
KVJ C8 N2 SING Y N 24
KVJ C8 N3 SING N N 25
KVJ C1 C3 SING N N 26
KVJ C1 C SING N N 27
KVJ C3 C4 SING N N 28
KVJ C12 N3 SING N N 29
KVJ C12 C11 SING N N 30
KVJ N3 C9 SING N N 31
KVJ C4 O2 SING N N 32
KVJ C11 O3 SING N N 33
KVJ C9 C10 SING N N 34
KVJ O3 C10 SING N N 35
KVJ C1 H1 SING N N 36
KVJ C3 H2 SING N N 37
KVJ O2 H3 SING N N 38
KVJ C11 H4 SING N N 39
KVJ C11 H5 SING N N 40
KVJ C12 H6 SING N N 41
KVJ C12 H7 SING N N 42
KVJ C14 H8 SING N N 43
KVJ C H9 SING N N 44
KVJ C H10 SING N N 45
KVJ C H11 SING N N 46
KVJ C10 H12 SING N N 47
KVJ C10 H13 SING N N 48
KVJ C4 H14 SING N N 49
KVJ C4 H15 SING N N 50
KVJ C6 H16 SING N N 51
KVJ C9 H17 SING N N 52
KVJ C9 H18 SING N N 53
KVJ N5 H19 SING N N 54
KVJ N5 H20 SING N N 55
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KVJ SMILES ACDLabs 12.01 "FC(F)(F)c1nc(N)ncc1c1nc(nc(c1)N1C(=O)OC(C)C1CO)N1CCOCC1"
KVJ InChI InChI 1.03 "InChI=1S/C18H20F3N7O4/c1-9-12(8-29)28(17(30)32-9)13-6-11(24-16(25-13)27-2-4-31-5-3-27)10-7-23-15(22)26-14(10)18(19,20)21/h6-7,9,12,29H,2-5,8H2,1H3,(H2,22,23,26)/t9-,12+/m1/s1"
KVJ InChIKey InChI 1.03 IEYOHYVYEJVEJJ-SKDRFNHKSA-N
KVJ SMILES_CANONICAL CACTVS 3.385 "C[C@H]1OC(=O)N([C@H]1CO)c2cc(nc(n2)N3CCOCC3)c4cnc(N)nc4C(F)(F)F"
KVJ SMILES CACTVS 3.385 "C[CH]1OC(=O)N([CH]1CO)c2cc(nc(n2)N3CCOCC3)c4cnc(N)nc4C(F)(F)F"
KVJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H](N(C(=O)O1)c2cc(nc(n2)N3CCOCC3)c4cnc(nc4C(F)(F)F)N)CO"
KVJ SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(N(C(=O)O1)c2cc(nc(n2)N3CCOCC3)c4cnc(nc4C(F)(F)F)N)CO"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KVJ "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,5R)-3-[2'-amino-2-(morpholin-4-yl)-4'-(trifluoromethyl)[4,5'-bipyrimidin]-6-yl]-4-(hydroxymethyl)-5-methyl-1,3-oxazolidin-2-one"
KVJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},5~{R})-3-[6-[2-azanyl-4-(trifluoromethyl)pyrimidin-5-yl]-2-morpholin-4-yl-pyrimidin-4-yl]-4-(hydroxymethyl)-5-methyl-1,3-oxazolidin-2-one"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KVJ "Create component" 2022-02-16 RCSB
KVJ "Initial release" 2022-05-18 RCSB
##