data_KWF # _chem_comp.id KWF _chem_comp.name "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-naphthalen-2-ylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H35 N9 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-naphthalen-2-ylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-07 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 875.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KWF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A2I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KWF C38 C1 C 0 1 Y N N 0.240 -28.032 -21.986 -5.881 3.962 0.772 C38 KWF 1 KWF C40 C2 C 0 1 N N R 5.452 -29.404 -21.347 -0.357 3.724 0.653 C40 KWF 2 KWF C36 C3 C 0 1 Y N N 1.750 -26.321 -21.656 -4.745 5.964 0.924 C36 KWF 3 KWF C33 C4 C 0 1 Y N N 1.315 -28.918 -22.321 -4.711 3.364 0.287 C33 KWF 4 KWF C30 C5 C 0 1 Y N N -1.974 -35.858 -23.718 -7.801 -3.392 -1.442 C30 KWF 5 KWF C25 C6 C 0 1 Y N N -5.169 -37.815 -23.327 -10.193 -5.994 -0.411 C25 KWF 6 KWF C26 C7 C 0 1 Y N N -6.471 -37.630 -22.894 -10.924 -6.328 0.688 C26 KWF 7 KWF C28 C8 C 0 1 Y N N -5.975 -35.332 -22.379 -10.069 -4.457 1.919 C28 KWF 8 KWF C27 C9 C 0 1 Y N N -6.882 -36.387 -22.416 -10.862 -5.561 1.850 C27 KWF 9 KWF C10 C10 C 0 1 N N N 6.163 -32.443 -23.209 0.652 0.934 -0.930 C10 KWF 10 KWF C02 C11 C 0 1 N N R 5.208 -34.992 -20.629 4.334 0.046 0.747 C02 KWF 11 KWF C03 C12 C 0 1 N N R 5.201 -35.234 -19.169 5.079 1.151 -0.040 C03 KWF 12 KWF C04 C13 C 0 1 N N N 5.799 -34.051 -18.501 5.285 2.379 0.829 C04 KWF 13 KWF C08 C14 C 0 1 N N S 5.686 -30.870 -21.390 1.004 3.173 0.180 C08 KWF 14 KWF C09 C15 C 0 1 N N R 6.326 -31.037 -22.687 0.679 2.453 -1.137 C09 KWF 15 KWF C13 C16 C 0 1 N N R 4.937 -29.150 -22.706 -1.199 3.781 -0.632 C13 KWF 16 KWF C15 C17 C 0 1 Y N N 2.854 -30.503 -22.891 -3.032 2.071 -0.512 C15 KWF 17 KWF C16 C18 C 0 1 Y N N 1.486 -30.277 -22.721 -4.337 2.011 -0.147 C16 KWF 18 KWF C17 C19 C 0 1 Y N N 0.417 -31.380 -22.893 -5.213 0.817 -0.181 C17 KWF 19 KWF C18 C20 C 0 1 Y N N 0.829 -32.689 -22.759 -5.288 0.039 -1.336 C18 KWF 20 KWF C19 C21 C 0 1 Y N N -0.086 -33.717 -22.892 -6.103 -1.071 -1.367 C19 KWF 21 KWF C20 C22 C 0 1 Y N N -1.405 -33.439 -23.159 -6.853 -1.417 -0.243 C20 KWF 22 KWF C21 C23 C 0 1 Y N N -2.389 -34.614 -23.254 -7.730 -2.612 -0.276 C21 KWF 23 KWF C22 C24 C 0 1 Y N N -3.699 -34.441 -22.789 -8.472 -2.949 0.841 C22 KWF 24 KWF C23 C25 C 0 1 Y N N -4.635 -35.521 -22.826 -9.300 -4.082 0.804 C23 KWF 25 KWF C24 C26 C 0 1 Y N N -4.237 -36.732 -23.290 -9.363 -4.862 -0.379 C24 KWF 26 KWF C29 C27 C 0 1 Y N N -2.885 -36.912 -23.743 -8.600 -4.488 -1.500 C29 KWF 27 KWF C31 C28 C 0 1 Y N N -1.838 -32.129 -23.266 -6.778 -0.639 0.913 C31 KWF 28 KWF C32 C29 C 0 1 Y N N -0.918 -31.103 -23.136 -5.959 0.468 0.946 C32 KWF 29 KWF C34 C30 C 0 1 Y N N 2.585 -28.394 -22.291 -3.557 4.154 0.143 C34 KWF 30 KWF C45 C31 C 0 1 N N R 2.998 -35.289 -19.894 6.133 -0.878 -0.528 C45 KWF 31 KWF C47 C32 C 0 1 Y N N 1.900 -33.168 -19.257 7.599 -1.037 1.516 C47 KWF 32 KWF C49 C33 C 0 1 Y N N -0.175 -33.724 -19.590 8.310 -3.075 1.367 C49 KWF 33 KWF C50 C34 C 0 1 Y N N 0.618 -34.791 -19.885 7.478 -2.848 0.277 C50 KWF 34 KWF C52 C35 C 0 1 N N N -1.403 -36.182 -20.488 7.873 -5.069 -0.451 C52 KWF 35 KWF C55 C36 C 0 1 N N N -1.687 -33.841 -19.743 8.930 -4.397 1.499 C55 KWF 36 KWF C57 C37 C 0 1 N N R 3.810 -34.589 -20.922 4.670 -1.191 -0.125 C57 KWF 37 KWF N14 N1 N 0 1 Y N N 3.499 -29.361 -22.646 -2.565 3.345 -0.341 N14 KWF 38 KWF N35 N2 N 0 1 Y N N 2.775 -27.097 -21.963 -3.624 5.443 0.473 N35 KWF 39 KWF N37 N3 N 0 1 Y N N 0.503 -26.776 -21.669 -5.852 5.258 1.071 N37 KWF 40 KWF N39 N4 N 0 1 N N N -1.146 -28.471 -21.976 -7.041 3.225 0.930 N39 KWF 41 KWF N46 N5 N 0 1 Y N N 1.877 -34.444 -19.670 7.039 -1.564 0.390 N46 KWF 42 KWF N48 N6 N 0 1 Y N N 0.620 -32.723 -19.203 8.351 -1.931 2.089 N48 KWF 43 KWF N51 N7 N 0 1 N N N 0.034 -36.070 -20.349 7.271 -3.863 -0.621 N51 KWF 44 KWF N53 N8 N 0 1 N N N -1.958 -37.439 -20.939 7.640 -6.057 -1.370 N53 KWF 45 KWF N54 N9 N 0 1 N N N -2.253 -35.065 -20.182 8.662 -5.328 0.570 N54 KWF 46 KWF O01 O1 O 0 1 N N N 5.568 -36.171 -21.334 2.950 0.304 0.838 O01 KWF 47 KWF O05 O2 O 0 1 N N N 4.954 -32.940 -18.685 4.035 3.073 0.952 O05 KWF 48 KWF O07 O3 O 0 1 N N N 6.507 -31.261 -20.272 1.907 4.255 -0.054 O07 KWF 49 KWF O11 O4 O 0 1 N N N 4.782 -32.757 -23.227 1.793 0.353 -1.552 O11 KWF 50 KWF O12 O5 O 0 1 N N N 5.611 -30.084 -23.550 -0.598 2.908 -1.591 O12 KWF 51 KWF O41 O6 O 0 1 N N N 6.654 -28.700 -21.134 -0.201 5.030 1.204 O41 KWF 52 KWF O42 O7 O 0 1 N N N 4.836 -30.329 -18.431 4.140 5.426 0.045 O42 KWF 53 KWF O43 O8 O 0 1 N N N 6.781 -31.522 -17.802 3.891 3.561 -1.633 O43 KWF 54 KWF O44 O9 O 0 1 N N N 3.810 -35.383 -18.737 6.319 0.544 -0.428 O44 KWF 55 KWF O56 O10 O 0 1 N N N -2.383 -32.919 -19.495 9.675 -4.645 2.434 O56 KWF 56 KWF O58 O11 O 0 1 N N N 3.435 -34.983 -22.224 3.869 -1.228 -1.297 O58 KWF 57 KWF O60 O12 O 0 1 N N N 5.322 -35.201 -24.065 1.775 -2.033 -2.648 O60 KWF 58 KWF O61 O13 O 0 1 N N N 3.262 -34.153 -24.565 1.681 -1.749 -0.147 O61 KWF 59 KWF P06 P1 P 0 1 N N N 5.707 -31.475 -18.830 3.502 4.102 -0.166 P06 KWF 60 KWF P59 P2 P 0 1 N N N 4.277 -34.306 -23.487 2.267 -1.173 -1.375 P59 KWF 61 KWF H1 H1 H 0 1 N N N 4.694 -29.155 -20.590 -0.812 3.048 1.377 H1 KWF 62 KWF H2 H2 H 0 1 N N N 1.932 -25.291 -21.388 -4.762 7.013 1.182 H2 KWF 63 KWF H3 H3 H 0 1 N N N -0.958 -36.005 -24.055 -7.215 -3.114 -2.306 H3 KWF 64 KWF H4 H4 H 0 1 N N N -4.856 -38.781 -23.694 -10.251 -6.598 -1.305 H4 KWF 65 KWF H5 H5 H 0 1 N N N -7.171 -38.452 -22.927 -11.561 -7.199 0.659 H5 KWF 66 KWF H6 H6 H 0 1 N N N -6.288 -34.366 -22.010 -10.031 -3.872 2.827 H6 KWF 67 KWF H7 H7 H 0 1 N N N -7.897 -36.243 -22.077 -11.452 -5.847 2.708 H7 KWF 68 KWF H8 H8 H 0 1 N N N 6.695 -33.147 -22.552 0.646 0.716 0.134 H8 KWF 69 KWF H9 H9 H 0 1 N N N 6.572 -32.511 -24.228 -0.252 0.526 -1.385 H9 KWF 70 KWF H10 H10 H 0 1 N N N 5.894 -34.167 -20.870 4.785 -0.068 1.736 H10 KWF 71 KWF H11 H11 H 0 1 N N N 5.779 -36.139 -18.929 4.503 1.393 -0.933 H11 KWF 72 KWF H12 H12 H 0 1 N N N 5.912 -34.253 -17.426 5.627 2.086 1.821 H12 KWF 73 KWF H13 H13 H 0 1 N N N 6.785 -33.840 -18.940 6.021 3.042 0.373 H13 KWF 74 KWF H14 H14 H 0 1 N N N 4.724 -31.403 -21.367 1.408 2.476 0.910 H14 KWF 75 KWF H15 H15 H 0 1 N N N 7.394 -30.779 -22.630 1.441 2.695 -1.881 H15 KWF 76 KWF H16 H16 H 0 1 N N N 5.161 -28.117 -23.009 -1.212 4.805 -1.011 H16 KWF 77 KWF H17 H17 H 0 1 N N N 3.311 -31.440 -23.172 -2.450 1.239 -0.882 H17 KWF 78 KWF H18 H18 H 0 1 N N N 1.865 -32.911 -22.550 -4.708 0.307 -2.207 H18 KWF 79 KWF H19 H19 H 0 1 N N N 0.237 -34.742 -22.786 -6.161 -1.674 -2.261 H19 KWF 80 KWF H20 H20 H 0 1 N N N -4.005 -33.482 -22.398 -8.414 -2.346 1.735 H20 KWF 81 KWF H21 H21 H 0 1 N N N -2.570 -37.878 -24.108 -8.644 -5.077 -2.404 H21 KWF 82 KWF H22 H22 H 0 1 N N N -2.880 -31.910 -23.448 -7.359 -0.907 1.783 H22 KWF 83 KWF H23 H23 H 0 1 N N N -1.244 -30.077 -23.225 -5.901 1.070 1.840 H23 KWF 84 KWF H24 H24 H 0 1 N N N 2.690 -36.281 -20.255 6.300 -1.207 -1.547 H24 KWF 85 KWF H25 H25 H 0 1 N N N 2.782 -32.596 -19.011 7.444 -0.030 1.875 H25 KWF 86 KWF H26 H26 H 0 1 N N N 3.705 -33.501 -20.799 4.618 -2.098 0.457 H26 KWF 87 KWF H27 H27 H 0 1 N N N -1.736 -27.708 -21.713 -7.846 3.652 1.263 H27 KWF 88 KWF H28 H28 H 0 1 N N N -1.401 -28.790 -22.889 -7.050 2.280 0.709 H28 KWF 89 KWF H29 H29 H 0 1 N N N 0.625 -36.847 -20.564 6.697 -3.716 -1.389 H29 KWF 90 KWF H30 H30 H 0 1 N N N -2.947 -37.540 -21.042 7.055 -5.889 -2.125 H30 KWF 91 KWF H31 H31 H 0 1 N N N -1.352 -38.207 -21.148 8.060 -6.925 -1.266 H31 KWF 92 KWF H32 H32 H 0 1 N N N 6.466 -36.403 -21.126 2.731 1.123 1.302 H32 KWF 93 KWF H33 H33 H 0 1 N N N 6.972 -28.874 -20.256 -1.030 5.439 1.488 H33 KWF 94 KWF H34 H34 H 0 1 N N N 6.644 -30.828 -17.168 4.841 3.446 -1.771 H34 KWF 95 KWF H35 H35 H 0 1 N N N 5.080 -35.440 -24.952 0.815 -2.047 -2.765 H35 KWF 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KWF O61 P59 DOUB N N 1 KWF O60 P59 SING N N 2 KWF C29 C30 DOUB Y N 3 KWF C29 C24 SING Y N 4 KWF C30 C21 SING Y N 5 KWF O12 C13 SING N N 6 KWF O12 C09 SING N N 7 KWF P59 O11 SING N N 8 KWF P59 O58 SING N N 9 KWF C25 C24 DOUB Y N 10 KWF C25 C26 SING Y N 11 KWF C24 C23 SING Y N 12 KWF C31 C20 DOUB Y N 13 KWF C31 C32 SING Y N 14 KWF C21 C20 SING N N 15 KWF C21 C22 DOUB Y N 16 KWF O11 C10 SING N N 17 KWF C10 C09 SING N N 18 KWF C20 C19 SING Y N 19 KWF C32 C17 DOUB Y N 20 KWF C26 C27 DOUB Y N 21 KWF C17 C18 SING Y N 22 KWF C17 C16 SING N N 23 KWF C19 C18 DOUB Y N 24 KWF C15 C16 DOUB Y N 25 KWF C15 N14 SING Y N 26 KWF C23 C22 SING Y N 27 KWF C23 C28 DOUB Y N 28 KWF C16 C33 SING Y N 29 KWF C13 N14 SING N N 30 KWF C13 C40 SING N N 31 KWF C09 C08 SING N N 32 KWF N14 C34 SING Y N 33 KWF C27 C28 SING Y N 34 KWF C33 C34 DOUB Y N 35 KWF C33 C38 SING Y N 36 KWF C34 N35 SING Y N 37 KWF O58 C57 SING N N 38 KWF C38 N39 SING N N 39 KWF C38 N37 DOUB Y N 40 KWF N35 C36 DOUB Y N 41 KWF N37 C36 SING Y N 42 KWF C08 C40 SING N N 43 KWF C08 O07 SING N N 44 KWF C40 O41 SING N N 45 KWF O01 C02 SING N N 46 KWF N53 C52 SING N N 47 KWF C57 C02 SING N N 48 KWF C57 C45 SING N N 49 KWF C02 C03 SING N N 50 KWF C52 N51 SING N N 51 KWF C52 N54 DOUB N N 52 KWF N51 C50 SING N N 53 KWF O07 P06 SING N N 54 KWF N54 C55 SING N N 55 KWF C45 N46 SING N N 56 KWF C45 O44 SING N N 57 KWF C50 N46 SING Y N 58 KWF C50 C49 DOUB Y N 59 KWF C55 C49 SING N N 60 KWF C55 O56 DOUB N N 61 KWF N46 C47 SING Y N 62 KWF C49 N48 SING Y N 63 KWF C47 N48 DOUB Y N 64 KWF C03 O44 SING N N 65 KWF C03 C04 SING N N 66 KWF P06 O05 SING N N 67 KWF P06 O42 DOUB N N 68 KWF P06 O43 SING N N 69 KWF O05 C04 SING N N 70 KWF C40 H1 SING N N 71 KWF C36 H2 SING N N 72 KWF C30 H3 SING N N 73 KWF C25 H4 SING N N 74 KWF C26 H5 SING N N 75 KWF C28 H6 SING N N 76 KWF C27 H7 SING N N 77 KWF C10 H8 SING N N 78 KWF C10 H9 SING N N 79 KWF C02 H10 SING N N 80 KWF C03 H11 SING N N 81 KWF C04 H12 SING N N 82 KWF C04 H13 SING N N 83 KWF C08 H14 SING N N 84 KWF C09 H15 SING N N 85 KWF C13 H16 SING N N 86 KWF C15 H17 SING N N 87 KWF C18 H18 SING N N 88 KWF C19 H19 SING N N 89 KWF C22 H20 SING N N 90 KWF C29 H21 SING N N 91 KWF C31 H22 SING N N 92 KWF C32 H23 SING N N 93 KWF C45 H24 SING N N 94 KWF C47 H25 SING N N 95 KWF C57 H26 SING N N 96 KWF N39 H27 SING N N 97 KWF N39 H28 SING N N 98 KWF N51 H29 SING N N 99 KWF N53 H30 SING N N 100 KWF N53 H31 SING N N 101 KWF O01 H32 SING N N 102 KWF O41 H33 SING N N 103 KWF O43 H34 SING N N 104 KWF O60 H35 SING N N 105 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KWF InChI InChI 1.06 "InChI=1S/C37H35N9O13P2/c38-31-25-22(19-8-5-18(6-9-19)21-10-7-17-3-1-2-4-20(17)11-21)12-45(32(25)41-15-40-31)35-28(48)29-24(57-35)14-55-61(52,53)59-30-27(47)23(13-54-60(50,51)58-29)56-36(30)46-16-42-26-33(46)43-37(39)44-34(26)49/h1-12,15-16,23-24,27-30,35-36,47-48H,13-14H2,(H,50,51)(H,52,53)(H2,38,40,41)(H3,39,43,44,49)/t23-,24-,27-,28-,29-,30-,35-,36-/m1/s1" KWF InChIKey InChI 1.06 GFAYSQUXBCIDJM-NXVDNDCWSA-N KWF SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cc(c7ccc(cc7)c8ccc9ccccc9c8)c%10c(N)ncnc6%10)c2N1" KWF SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cc(c7ccc(cc7)c8ccc9ccccc9c8)c%10c(N)ncnc6%10)c2N1" KWF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)c3ccc(cc3)c4cn(c5c4c(ncn5)N)[C@H]6[C@@H]([C@H]7[C@H](O6)COP(=O)(O[C@@H]8[C@@H]([C@@H](COP(=O)(O7)O)O[C@H]8n9cnc1c9NC(=NC1=O)N)O)O)O" KWF SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)c3ccc(cc3)c4cn(c5c4c(ncn5)N)C6C(C7C(O6)COP(=O)(OC8C(C(COP(=O)(O7)O)OC8n9cnc1c9NC(=NC1=O)N)O)O)O" # _pdbx_chem_comp_identifier.comp_id KWF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-naphthalen-2-ylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KWF "Create component" 2022-06-07 PDBE KWF "Modify descriptor" 2022-08-22 RCSB KWF "Initial release" 2022-10-12 RCSB #