data_KWO # _chem_comp.id KWO _chem_comp.name "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-phenylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H33 N9 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-phenylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-07 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 825.615 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KWO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A2J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KWO C13 C1 C 0 1 N N R 3.914 -34.462 -2.996 -3.229 1.643 -0.867 C13 KWO 1 KWO C17 C2 C 0 1 N N N 5.824 -34.016 -0.569 -6.038 0.511 0.464 C17 KWO 2 KWO C20 C3 C 0 1 N N R 3.044 -35.197 -2.035 -3.746 2.865 -0.087 C20 KWO 3 KWO C22 C4 C 0 1 Y N N 1.854 -33.152 -1.227 -3.644 2.406 2.393 C22 KWO 4 KWO C24 C5 C 0 1 Y N N -0.179 -33.747 -1.647 -1.723 3.263 2.914 C24 KWO 5 KWO C02 C6 C 0 1 N N R 5.536 -29.011 -3.080 -1.324 -3.205 0.735 C02 KWO 6 KWO C03 C7 C 0 1 N N S 5.676 -30.458 -3.152 -2.326 -2.330 -0.044 C03 KWO 7 KWO C08 C8 C 0 1 N N R 6.278 -30.666 -4.498 -2.023 -2.612 -1.525 C08 KWO 8 KWO C09 C9 C 0 1 N N N 6.108 -32.061 -5.093 -2.092 -1.319 -2.335 C09 KWO 9 KWO C14 C10 C 0 1 N N R 5.264 -34.884 -2.748 -4.503 0.993 -1.457 C14 KWO 10 KWO C16 C11 C 0 1 N N R 5.239 -35.161 -1.267 -5.649 1.553 -0.589 C16 KWO 11 KWO C25 C12 C 0 1 Y N N 0.651 -34.759 -2.017 -1.906 3.460 1.541 C25 KWO 12 KWO C27 C13 C 0 1 N N N -1.288 -36.158 -2.778 0.140 4.523 1.398 C27 KWO 13 KWO C30 C14 C 0 1 N N N -1.675 -33.887 -1.832 -0.533 3.739 3.513 C30 KWO 14 KWO C35 C15 C 0 1 N N R 4.966 -28.707 -4.419 -0.370 -3.758 -0.337 C35 KWO 15 KWO C37 C16 C 0 1 Y N N 2.947 -29.941 -4.650 1.692 -2.329 -0.455 C37 KWO 16 KWO C38 C17 C 0 1 Y N N 1.596 -29.741 -4.490 2.945 -2.316 0.064 C38 KWO 17 KWO C39 C18 C 0 1 Y N N 0.595 -30.843 -4.736 3.999 -1.306 -0.190 C39 KWO 18 KWO C40 C19 C 0 1 Y N N -0.744 -30.627 -5.027 4.680 -0.724 0.880 C40 KWO 19 KWO C41 C20 C 0 1 Y N N -1.584 -31.701 -5.237 5.663 0.211 0.644 C41 KWO 20 KWO C42 C21 C 0 1 Y N N -1.027 -32.940 -5.145 5.979 0.575 -0.664 C42 KWO 21 KWO C43 C22 C 0 1 Y N N -1.850 -34.140 -5.388 7.038 1.582 -0.918 C43 KWO 22 KWO C44 C23 C 0 1 Y N N -3.128 -34.165 -4.925 7.356 1.948 -2.225 C44 KWO 23 KWO C45 C24 C 0 1 Y N N -3.848 -35.288 -5.177 8.343 2.885 -2.455 C45 KWO 24 KWO C46 C25 C 0 1 Y N N -3.311 -36.353 -5.892 9.016 3.460 -1.392 C46 KWO 25 KWO C47 C26 C 0 1 Y N N -2.029 -36.286 -6.369 8.705 3.100 -0.093 C47 KWO 26 KWO C48 C27 C 0 1 Y N N -1.293 -35.169 -6.113 7.716 2.169 0.149 C48 KWO 27 KWO C49 C28 C 0 1 Y N N 0.282 -33.158 -4.852 5.299 -0.007 -1.734 C49 KWO 28 KWO C50 C29 C 0 1 Y N N 1.097 -32.101 -4.636 4.316 -0.942 -1.499 C50 KWO 29 KWO C51 C30 C 0 1 Y N N 1.375 -28.422 -4.106 3.052 -3.500 0.926 C51 KWO 30 KWO C52 C31 C 0 1 Y N N 2.629 -27.872 -4.033 1.809 -4.152 0.852 C52 KWO 31 KWO C54 C32 C 0 1 Y N N 1.640 -25.860 -3.405 2.606 -5.758 2.295 C54 KWO 32 KWO C56 C33 C 0 1 Y N N 0.237 -27.623 -3.811 4.056 -4.054 1.731 C56 KWO 33 KWO N21 N1 N 0 1 Y N N 1.891 -34.397 -1.759 -3.121 2.908 1.237 N21 KWO 34 KWO N23 N2 N 0 1 Y N N 0.562 -32.751 -1.156 -2.821 2.619 3.378 N23 KWO 35 KWO N26 N3 N 0 1 N N N 0.137 -36.017 -2.598 -0.960 4.084 0.828 N26 KWO 36 KWO N28 N4 N 0 1 N N N -1.743 -37.409 -3.350 1.082 5.157 0.627 N28 KWO 37 KWO N29 N5 N 0 1 N N N -2.169 -35.081 -2.386 0.379 4.354 2.729 N29 KWO 38 KWO N36 N6 N 0 1 Y N N 3.566 -28.825 -4.362 1.013 -3.420 0.012 N36 KWO 39 KWO N53 N7 N 0 1 Y N N 2.725 -26.567 -3.680 1.635 -5.272 1.552 N53 KWO 40 KWO N55 N8 N 0 1 Y N N 0.412 -26.370 -3.464 3.788 -5.176 2.393 N55 KWO 41 KWO N57 N9 N 0 1 N N N -1.104 -28.169 -3.867 5.296 -3.449 1.834 N57 KWO 42 KWO O01 O1 O 0 1 N N N 6.797 -28.320 -2.975 -2.005 -4.275 1.394 O01 KWO 43 KWO O04 O2 O 0 1 N N N 6.528 -30.886 -2.106 -3.668 -2.697 0.271 O04 KWO 44 KWO O06 O3 O 0 1 N N N 4.882 -30.343 -0.090 -6.184 -2.599 0.086 O06 KWO 45 KWO O07 O4 O 0 1 N N N 6.968 -31.646 0.155 -4.848 -1.544 -1.778 O07 KWO 46 KWO O10 O5 O 0 1 N N N 4.759 -32.436 -5.074 -1.230 -0.336 -1.761 O10 KWO 47 KWO O12 O6 O 0 1 N N N 3.577 -34.816 -4.311 -2.343 2.043 -1.910 O12 KWO 48 KWO O15 O7 O 0 1 N N N 5.581 -36.034 -3.536 -4.674 1.380 -2.822 O15 KWO 49 KWO O18 O8 O 0 1 N N N 5.052 -32.865 -0.771 -4.981 -0.442 0.605 O18 KWO 50 KWO O19 O9 O 0 1 N N N 3.813 -35.338 -0.879 -5.161 2.733 0.050 O19 KWO 51 KWO O31 O10 O 0 1 N N N -2.399 -32.996 -1.509 -0.335 3.597 4.708 O31 KWO 52 KWO O32 O11 O 0 1 N N N 5.218 -34.715 -6.303 -1.032 1.081 -3.842 O32 KWO 53 KWO O33 O12 O 0 1 N N N 2.997 -33.841 -6.263 0.276 1.820 -1.813 O33 KWO 54 KWO O34 O13 O 0 1 N N N 5.604 -29.663 -5.293 -0.706 -3.169 -1.594 O34 KWO 55 KWO P05 P1 P 0 1 N N N 5.783 -31.379 -0.705 -4.948 -1.837 -0.198 P05 KWO 56 KWO P11 P2 P 0 1 N N N 4.244 -33.959 -5.469 -1.081 1.151 -2.364 P11 KWO 57 KWO H1 H1 H 0 1 N N N 3.812 -33.378 -2.839 -2.739 0.946 -0.191 H1 KWO 58 KWO H2 H2 H 0 1 N N N 5.870 -34.235 0.508 -6.210 1.007 1.419 H2 KWO 59 KWO H3 H3 H 0 1 N N N 6.840 -33.841 -0.952 -6.948 0.000 0.150 H3 KWO 60 KWO H4 H4 H 0 1 N N N 2.757 -36.173 -2.453 -3.513 3.777 -0.636 H4 KWO 61 KWO H5 H5 H 0 1 N N N 2.711 -32.575 -0.912 -4.600 1.911 2.479 H5 KWO 62 KWO H6 H6 H 0 1 N N N 4.842 -28.713 -2.280 -0.775 -2.602 1.458 H6 KWO 63 KWO H7 H7 H 0 1 N N N 4.693 -30.948 -3.094 -2.158 -1.277 0.181 H7 KWO 64 KWO H8 H8 H 0 1 N N N 7.353 -30.436 -4.449 -2.742 -3.333 -1.916 H8 KWO 65 KWO H9 H9 H 0 1 N N N 6.693 -32.781 -4.502 -1.782 -1.518 -3.361 H9 KWO 66 KWO H10 H10 H 0 1 N N N 6.470 -32.059 -6.132 -3.116 -0.947 -2.334 H10 KWO 67 KWO H11 H11 H 0 1 N N N 5.968 -34.065 -2.957 -4.452 -0.092 -1.369 H11 KWO 68 KWO H12 H12 H 0 1 N N N 5.807 -36.077 -1.048 -6.506 1.790 -1.215 H12 KWO 69 KWO H13 H13 H 0 1 N N N 5.252 -27.686 -4.711 -0.477 -4.841 -0.401 H13 KWO 70 KWO H14 H14 H 0 1 N N N 3.417 -30.862 -4.961 1.290 -1.588 -1.130 H14 KWO 71 KWO H15 H15 H 0 1 N N N -1.128 -29.620 -5.089 4.434 -1.006 1.894 H15 KWO 72 KWO H16 H16 H 0 1 N N N -2.631 -31.566 -5.463 6.190 0.661 1.473 H16 KWO 73 KWO H17 H17 H 0 1 N N N -3.550 -33.332 -4.383 6.832 1.500 -3.055 H17 KWO 74 KWO H18 H18 H 0 1 N N N -4.863 -35.356 -4.813 8.591 3.170 -3.467 H18 KWO 75 KWO H19 H19 H 0 1 N N N -3.907 -37.236 -6.072 9.788 4.193 -1.577 H19 KWO 76 KWO H20 H20 H 0 1 N N N -1.610 -37.103 -6.937 9.230 3.556 0.733 H20 KWO 77 KWO H21 H21 H 0 1 N N N -0.279 -35.091 -6.476 7.473 1.888 1.164 H21 KWO 78 KWO H22 H22 H 0 1 N N N 0.667 -34.165 -4.792 5.544 0.276 -2.747 H22 KWO 79 KWO H23 H23 H 0 1 N N N 2.136 -32.255 -4.387 3.793 -1.395 -2.328 H23 KWO 80 KWO H24 H24 H 0 1 N N N 1.756 -24.825 -3.120 2.429 -6.668 2.848 H24 KWO 81 KWO H25 H25 H 0 1 N N N -1.081 -38.116 -3.596 0.930 5.277 -0.324 H25 KWO 82 KWO H26 H26 H 0 1 N N N -2.720 -37.565 -3.499 1.899 5.487 1.032 H26 KWO 83 KWO H27 H27 H 0 1 N N N -3.155 -35.188 -2.512 1.202 4.690 3.118 H27 KWO 84 KWO H28 H28 H 0 1 N N N -1.763 -27.461 -3.614 5.479 -2.631 1.346 H28 KWO 85 KWO H29 H29 H 0 1 N N N -1.296 -28.487 -4.796 5.983 -3.843 2.395 H29 KWO 86 KWO H30 H30 H 0 1 N N N 7.186 -28.497 -2.126 -1.421 -4.872 1.880 H30 KWO 87 KWO H31 H31 H 0 1 N N N 6.923 -31.104 0.934 -4.909 -2.337 -2.329 H31 KWO 88 KWO H32 H32 H 0 1 N N N 6.476 -36.301 -3.362 -5.458 1.001 -3.242 H32 KWO 89 KWO H33 H33 H 0 1 N N N 3.114 -34.269 -7.103 1.078 1.335 -2.050 H33 KWO 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KWO C47 C48 DOUB Y N 1 KWO C47 C46 SING Y N 2 KWO O32 P11 DOUB N N 3 KWO O33 P11 SING N N 4 KWO C48 C43 SING Y N 5 KWO C46 C45 DOUB Y N 6 KWO P11 O10 SING N N 7 KWO P11 O12 SING N N 8 KWO C43 C42 SING N N 9 KWO C43 C44 DOUB Y N 10 KWO O34 C08 SING N N 11 KWO O34 C35 SING N N 12 KWO C41 C42 DOUB Y N 13 KWO C41 C40 SING Y N 14 KWO C45 C44 SING Y N 15 KWO C42 C49 SING Y N 16 KWO C09 O10 SING N N 17 KWO C09 C08 SING N N 18 KWO C40 C39 DOUB Y N 19 KWO C49 C50 DOUB Y N 20 KWO C39 C50 SING Y N 21 KWO C39 C38 SING N N 22 KWO C37 C38 DOUB Y N 23 KWO C37 N36 SING Y N 24 KWO C08 C03 SING N N 25 KWO C38 C51 SING Y N 26 KWO C35 N36 SING N N 27 KWO C35 C02 SING N N 28 KWO N36 C52 SING Y N 29 KWO O12 C13 SING N N 30 KWO C51 C52 DOUB Y N 31 KWO C51 C56 SING Y N 32 KWO C52 N53 SING Y N 33 KWO N57 C56 SING N N 34 KWO C56 N55 DOUB Y N 35 KWO N53 C54 DOUB Y N 36 KWO O15 C14 SING N N 37 KWO N55 C54 SING Y N 38 KWO N28 C27 SING N N 39 KWO C03 C02 SING N N 40 KWO C03 O04 SING N N 41 KWO C02 O01 SING N N 42 KWO C13 C14 SING N N 43 KWO C13 C20 SING N N 44 KWO C27 N26 DOUB N N 45 KWO C27 N29 SING N N 46 KWO C14 C16 SING N N 47 KWO N26 C25 SING N N 48 KWO N29 C30 SING N N 49 KWO O04 P05 SING N N 50 KWO C20 N21 SING N N 51 KWO C20 O19 SING N N 52 KWO C25 N21 SING Y N 53 KWO C25 C24 DOUB Y N 54 KWO C30 C24 SING N N 55 KWO C30 O31 DOUB N N 56 KWO N21 C22 SING Y N 57 KWO C24 N23 SING Y N 58 KWO C16 O19 SING N N 59 KWO C16 C17 SING N N 60 KWO C22 N23 DOUB Y N 61 KWO O18 P05 SING N N 62 KWO O18 C17 SING N N 63 KWO P05 O06 DOUB N N 64 KWO P05 O07 SING N N 65 KWO C13 H1 SING N N 66 KWO C17 H2 SING N N 67 KWO C17 H3 SING N N 68 KWO C20 H4 SING N N 69 KWO C22 H5 SING N N 70 KWO C02 H6 SING N N 71 KWO C03 H7 SING N N 72 KWO C08 H8 SING N N 73 KWO C09 H9 SING N N 74 KWO C09 H10 SING N N 75 KWO C14 H11 SING N N 76 KWO C16 H12 SING N N 77 KWO C35 H13 SING N N 78 KWO C37 H14 SING N N 79 KWO C40 H15 SING N N 80 KWO C41 H16 SING N N 81 KWO C44 H17 SING N N 82 KWO C45 H18 SING N N 83 KWO C46 H19 SING N N 84 KWO C47 H20 SING N N 85 KWO C48 H21 SING N N 86 KWO C49 H22 SING N N 87 KWO C50 H23 SING N N 88 KWO C54 H24 SING N N 89 KWO N28 H25 SING N N 90 KWO N28 H26 SING N N 91 KWO N29 H27 SING N N 92 KWO N57 H28 SING N N 93 KWO N57 H29 SING N N 94 KWO O01 H30 SING N N 95 KWO O07 H31 SING N N 96 KWO O15 H32 SING N N 97 KWO O33 H33 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KWO InChI InChI 1.06 "InChI=1S/C33H33N9O13P2/c34-27-21-18(17-8-6-16(7-9-17)15-4-2-1-3-5-15)10-41(28(21)37-13-36-27)31-24(44)25-20(53-31)12-51-57(48,49)55-26-23(43)19(11-50-56(46,47)54-25)52-32(26)42-14-38-22-29(42)39-33(35)40-30(22)45/h1-10,13-14,19-20,23-26,31-32,43-44H,11-12H2,(H,46,47)(H,48,49)(H2,34,36,37)(H3,35,39,40,45)/t19-,20-,23-,24-,25-,26-,31-,32-/m1/s1" KWO InChIKey InChI 1.06 KGCQPNZLZFAINN-YHOFCQOESA-N KWO SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@@H]3[C@@H]4O)n6cc(c7ccc(cc7)c8ccccc8)c9c(N)ncnc69" KWO SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]3[CH]4O)n6cc(c7ccc(cc7)c8ccccc8)c9c(N)ncnc69" KWO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)c3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@H]6[C@H](O5)COP(=O)(O[C@@H]7[C@@H]([C@@H](COP(=O)(O6)O)O[C@H]7n8cnc9c8N=C(NC9=O)N)O)O)O" KWO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)c3cn(c4c3c(ncn4)N)C5C(C6C(O5)COP(=O)(OC7C(C(COP(=O)(O6)O)OC7n8cnc9c8N=C(NC9=O)N)O)O)O" # _pdbx_chem_comp_identifier.comp_id KWO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-[4-azanyl-5-(4-phenylphenyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KWO "Create component" 2022-06-07 PDBE KWO "Modify descriptor" 2022-08-22 RCSB KWO "Initial release" 2022-10-12 RCSB #