data_KXL # _chem_comp.id KXL _chem_comp.name "(2S)-N-[(2S)-1-(dimethylamino)-1-oxidanylidene-3-phenyl-propan-2-yl]-2-oxidanyl-N'-(2-pyridin-2-ylethyl)butanediamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H28 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.482 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KXL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZVF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KXL O1 O1 O 0 1 N N N N N N 0.337 -4.671 23.239 2.221 0.860 1.427 O1 KXL 1 KXL O2 O2 O 0 1 N N N N N N 0.304 -7.542 25.305 0.017 -0.073 2.793 O2 KXL 2 KXL O3 O3 O 0 1 N N N N N N 2.611 -8.939 23.146 -2.348 -0.904 2.069 O3 KXL 3 KXL O4 O4 O 0 1 N N N N N N 3.119 -10.046 27.662 -2.671 -2.533 -1.189 O4 KXL 4 KXL N5 N1 N 0 1 N N N N N N 2.699 -8.858 25.376 -2.320 -0.152 -0.018 N5 KXL 5 KXL N6 N2 N 0 1 N N N N N N 4.031 -11.786 26.632 -4.732 -2.856 -0.435 N6 KXL 6 KXL N7 N3 N 0 1 N N N N N N 0.563 -4.203 25.398 3.046 -0.601 -0.025 N7 KXL 7 KXL N8 N4 N 0 1 Y N N N N N 0.177 -3.493 28.228 6.957 1.023 -0.831 N8 KXL 8 KXL C9 C1 C 0 1 N N N N N N 0.875 -4.908 24.301 2.023 -0.072 0.675 C9 KXL 9 KXL C10 C2 C 0 1 N N N N N N 1.914 -6.000 24.398 0.634 -0.637 0.525 C10 KXL 10 KXL C11 C3 C 0 1 N N S N N N 1.224 -7.362 24.223 -0.331 0.139 1.423 C11 KXL 11 KXL C12 C4 C 0 1 N N N N N N 2.238 -8.466 24.204 -1.739 -0.343 1.182 C12 KXL 12 KXL C13 C5 C 0 1 N N S N N N 3.963 -9.589 25.520 -3.688 -0.621 -0.253 C13 KXL 13 KXL C14 C6 C 0 1 N N N N N N 5.215 -8.754 25.757 -4.328 0.209 -1.368 C14 KXL 14 KXL C15 C7 C 0 1 Y N N N N N 6.468 -9.613 25.842 -4.485 1.635 -0.906 C15 KXL 15 KXL C16 C8 C 0 1 Y N N N N N 6.830 -10.269 27.014 -3.470 2.547 -1.125 C16 KXL 16 KXL C17 C9 C 0 1 Y N N N N N 7.988 -11.033 27.062 -3.613 3.855 -0.702 C17 KXL 17 KXL C18 C10 C 0 1 Y N N N N N 8.796 -11.138 25.938 -4.772 4.251 -0.059 C18 KXL 18 KXL C19 C11 C 0 1 Y N N N N N 8.442 -10.472 24.774 -5.786 3.338 0.160 C19 KXL 19 KXL C20 C12 C 0 1 Y N N N N N 7.279 -9.716 24.725 -5.645 2.031 -0.269 C20 KXL 20 KXL C21 C13 C 0 1 N N N N N N 3.689 -10.504 26.681 -3.659 -2.072 -0.659 C21 KXL 21 KXL C22 C14 C 0 1 N N N N N N 4.523 -12.474 25.450 -5.882 -2.330 0.305 C22 KXL 22 KXL C23 C15 C 0 1 N N N N N N 3.909 -12.611 27.823 -4.748 -4.235 -0.931 C23 KXL 23 KXL C24 C16 C 0 1 N N N N N N -0.457 -3.181 25.277 4.396 -0.052 0.121 C24 KXL 24 KXL C25 C17 C 0 1 N N N N N N -1.493 -3.216 26.394 5.362 -0.828 -0.777 C25 KXL 25 KXL C26 C18 C 0 1 Y N N N N N -0.883 -2.824 27.721 6.751 -0.263 -0.627 C26 KXL 26 KXL C27 C19 C 0 1 Y N N N N N -1.435 -1.763 28.424 7.794 -1.099 -0.278 C27 KXL 27 KXL C28 C20 C 0 1 Y N N N N N -0.887 -1.399 29.647 9.068 -0.570 -0.142 C28 KXL 28 KXL C29 C21 C 0 1 Y N N N N N 0.202 -2.106 30.138 9.246 0.788 -0.364 C29 KXL 29 KXL C30 C22 C 0 1 Y N N N N N 0.727 -3.159 29.403 8.155 1.561 -0.710 C30 KXL 30 KXL HO2 H1 H 0 1 N N N N N N -0.331 -6.835 25.303 -0.018 -0.999 3.069 HO2 KXL 31 KXL HN5 H2 H 0 1 N N N N N N 2.167 -8.649 26.197 -1.833 0.296 -0.727 HN5 KXL 32 KXL HN7 H3 H 0 1 N N N N N N 1.019 -4.377 26.271 2.887 -1.346 -0.626 HN7 KXL 33 KXL H1 H4 H 0 1 N N N N N N 2.403 -5.958 25.382 0.316 -0.547 -0.513 H1 KXL 34 KXL H101 H5 H 0 0 N N N N N N 2.667 -5.864 23.608 0.636 -1.687 0.816 H101 KXL 35 KXL H11 H6 H 0 1 N N N N N N 0.681 -7.358 23.266 -0.267 1.202 1.192 H11 KXL 36 KXL H13 H7 H 0 1 N N N N N N 4.124 -10.204 24.622 -4.272 -0.512 0.662 H13 KXL 37 KXL H141 H8 H 0 0 N N N N N N 5.329 -8.042 24.926 -3.692 0.181 -2.252 H141 KXL 38 KXL H142 H9 H 0 0 N N N N N N 5.099 -8.201 26.701 -5.307 -0.204 -1.612 H142 KXL 39 KXL H16 H10 H 0 1 N N N N N N 6.207 -10.183 27.892 -2.565 2.239 -1.627 H16 KXL 40 KXL H17 H11 H 0 1 N N N N N N 8.260 -11.545 27.973 -2.820 4.569 -0.873 H17 KXL 41 KXL H18 H12 H 0 1 N N N N N N 9.695 -11.735 25.970 -4.884 5.273 0.272 H18 KXL 42 KXL H19 H13 H 0 1 N N N N N N 9.074 -10.542 23.901 -6.691 3.647 0.662 H19 KXL 43 KXL H20 H14 H 0 1 N N N N N N 7.006 -9.207 23.813 -6.438 1.318 -0.097 H20 KXL 44 KXL H222 H15 H 0 0 N N N N N N 4.727 -13.526 25.696 -6.344 -1.525 -0.266 H222 KXL 45 KXL H223 H16 H 0 0 N N N N N N 3.765 -12.424 24.655 -6.609 -3.128 0.462 H223 KXL 46 KXL H221 H17 H 0 0 N N N N N N 5.449 -11.992 25.104 -5.549 -1.947 1.269 H221 KXL 47 KXL H233 H18 H 0 0 N N N N N N 3.531 -12.000 28.656 -4.332 -4.898 -0.173 H233 KXL 48 KXL H232 H19 H 0 0 N N N N N N 3.209 -13.436 27.627 -5.774 -4.530 -1.150 H232 KXL 49 KXL H231 H20 H 0 0 N N N N N N 4.895 -13.021 28.087 -4.150 -4.301 -1.840 H231 KXL 50 KXL H241 H21 H 0 0 N N N N N N 0.034 -2.197 25.289 4.394 0.998 -0.170 H241 KXL 51 KXL H242 H22 H 0 0 N N N N N N -0.976 -3.320 24.317 4.714 -0.142 1.159 H242 KXL 52 KXL H251 H23 H 0 0 N N N N N N -2.305 -2.515 26.152 5.364 -1.878 -0.487 H251 KXL 53 KXL H252 H24 H 0 0 N N N N N N -1.900 -4.235 26.474 5.044 -0.738 -1.816 H252 KXL 54 KXL H27 H25 H 0 1 N N N N N N -2.282 -1.226 28.024 7.620 -2.152 -0.112 H27 KXL 55 KXL H28 H26 H 0 1 N N N N N N -1.303 -0.576 30.209 9.903 -1.199 0.130 H28 KXL 56 KXL H29 H27 H 0 1 N N N N N N 0.639 -1.837 31.088 10.224 1.234 -0.267 H29 KXL 57 KXL H30 H28 H 0 1 N N N N N N 1.578 -3.709 29.778 8.285 2.619 -0.886 H30 KXL 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KXL O3 C12 DOUB N N 1 KXL O1 C9 DOUB N N 2 KXL C12 C11 SING N N 3 KXL C12 N5 SING N N 4 KXL C11 C10 SING N N 5 KXL C11 O2 SING N N 6 KXL C9 C10 SING N N 7 KXL C9 N7 SING N N 8 KXL C20 C19 DOUB Y N 9 KXL C20 C15 SING Y N 10 KXL C19 C18 SING Y N 11 KXL C24 N7 SING N N 12 KXL C24 C25 SING N N 13 KXL N5 C13 SING N N 14 KXL C22 N6 SING N N 15 KXL C13 C14 SING N N 16 KXL C13 C21 SING N N 17 KXL C14 C15 SING N N 18 KXL C15 C16 DOUB Y N 19 KXL C18 C17 DOUB Y N 20 KXL C25 C26 SING N N 21 KXL N6 C21 SING N N 22 KXL N6 C23 SING N N 23 KXL C21 O4 DOUB N N 24 KXL C16 C17 SING Y N 25 KXL C26 N8 DOUB Y N 26 KXL C26 C27 SING Y N 27 KXL N8 C30 SING Y N 28 KXL C27 C28 DOUB Y N 29 KXL C30 C29 DOUB Y N 30 KXL C28 C29 SING Y N 31 KXL O2 HO2 SING N N 32 KXL N5 HN5 SING N N 33 KXL N7 HN7 SING N N 34 KXL C10 H1 SING N N 35 KXL C10 H101 SING N N 36 KXL C11 H11 SING N N 37 KXL C13 H13 SING N N 38 KXL C14 H141 SING N N 39 KXL C14 H142 SING N N 40 KXL C16 H16 SING N N 41 KXL C17 H17 SING N N 42 KXL C18 H18 SING N N 43 KXL C19 H19 SING N N 44 KXL C20 H20 SING N N 45 KXL C22 H222 SING N N 46 KXL C22 H223 SING N N 47 KXL C22 H221 SING N N 48 KXL C23 H233 SING N N 49 KXL C23 H232 SING N N 50 KXL C23 H231 SING N N 51 KXL C24 H241 SING N N 52 KXL C24 H242 SING N N 53 KXL C25 H251 SING N N 54 KXL C25 H252 SING N N 55 KXL C27 H27 SING N N 56 KXL C28 H28 SING N N 57 KXL C29 H29 SING N N 58 KXL C30 H30 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KXL InChI InChI 1.06 "InChI=1S/C22H28N4O4/c1-26(2)22(30)18(14-16-8-4-3-5-9-16)25-21(29)19(27)15-20(28)24-13-11-17-10-6-7-12-23-17/h3-10,12,18-19,27H,11,13-15H2,1-2H3,(H,24,28)(H,25,29)/t18-,19-/m0/s1" KXL InChIKey InChI 1.06 WUIQDGGROZLMJW-OALUTQOASA-N KXL SMILES_CANONICAL CACTVS 3.385 "CN(C)C(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](O)CC(=O)NCCc2ccccn2" KXL SMILES CACTVS 3.385 "CN(C)C(=O)[CH](Cc1ccccc1)NC(=O)[CH](O)CC(=O)NCCc2ccccn2" KXL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(=O)NCCc2ccccn2)O" KXL SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)C(Cc1ccccc1)NC(=O)C(CC(=O)NCCc2ccccn2)O" # _pdbx_chem_comp_identifier.comp_id KXL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[(2~{S})-1-(dimethylamino)-1-oxidanylidene-3-phenyl-propan-2-yl]-2-oxidanyl-~{N}'-(2-pyridin-2-ylethyl)butanediamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KXL "Create component" 2022-06-07 PDBE KXL "Modify descriptor" 2022-08-22 RCSB KXL "Initial release" 2023-11-29 RCSB KXL "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KXL _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #