data_KY2 # _chem_comp.id KY2 _chem_comp.name "1-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]propyl]guanidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H30 N10 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-04 _chem_comp.pdbx_modified_date 2020-02-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 422.485 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KY2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6S7C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KY2 C13 C1 C 0 1 Y N N -14.487 121.453 90.943 4.176 -1.000 -0.487 C13 KY2 1 KY2 C11 C2 C 0 1 Y N N -15.118 120.475 91.782 5.519 -1.391 -0.350 C11 KY2 2 KY2 C28 C3 C 0 1 N N N -11.935 128.969 81.762 -3.106 -5.167 0.412 C28 KY2 3 KY2 C26 C4 C 0 1 N N N -13.443 127.908 83.429 -2.581 -2.822 -0.113 C26 KY2 4 KY2 C25 C5 C 0 1 N N N -13.914 128.196 84.868 -3.109 -1.427 0.228 C25 KY2 5 KY2 C24 C6 C 0 1 N N N -12.797 127.860 85.863 -2.260 -0.373 -0.485 C24 KY2 6 KY2 C22 C7 C 0 1 N N N -13.967 130.812 89.465 -6.217 2.502 -0.487 C22 KY2 7 KY2 C15 C8 C 0 1 Y N N -13.587 122.701 89.384 2.080 -0.711 -0.961 C15 KY2 8 KY2 C17 C9 C 0 1 N N R -12.752 126.560 89.320 -0.658 2.115 0.323 C17 KY2 9 KY2 C18 C10 C 0 1 N N N -12.741 126.479 87.900 -1.847 2.008 -0.634 C18 KY2 10 KY2 C20 C11 C 0 1 N N N -12.934 128.940 88.021 -4.116 1.167 -0.703 C20 KY2 11 KY2 C21 C12 C 0 1 N N N -14.197 129.472 88.751 -4.760 2.385 -0.037 C21 KY2 12 KY2 C02 C13 C 0 1 N N S -11.369 126.130 89.921 0.261 3.274 -0.110 C02 KY2 13 KY2 C03 C14 C 0 1 N N R -11.522 124.906 90.176 1.632 2.600 -0.355 C03 KY2 14 KY2 C05 C15 C 0 1 N N R -13.111 124.791 90.668 1.501 1.290 0.464 C05 KY2 15 KY2 C07 C16 C 0 1 Y N N -14.152 122.664 91.507 3.727 0.103 0.258 C07 KY2 16 KY2 C09 C17 C 0 1 Y N N -15.002 121.969 93.577 5.831 0.330 1.156 C09 KY2 17 KY2 N06 N1 N 0 1 Y N N -13.595 123.431 90.526 2.402 0.261 -0.061 N06 KY2 18 KY2 N08 N2 N 0 1 Y N N -14.431 122.898 92.824 4.581 0.732 1.059 N08 KY2 19 KY2 N10 N3 N 0 1 Y N N -15.342 120.788 93.056 6.299 -0.701 0.476 N10 KY2 20 KY2 N12 N4 N 0 1 N N N -15.494 119.162 91.270 6.018 -2.471 -1.058 N12 KY2 21 KY2 N14 N5 N 0 1 Y N N -14.128 121.498 89.626 3.121 -1.453 -1.205 N14 KY2 22 KY2 N19 N6 N 0 1 N N N -13.304 127.732 87.263 -2.767 0.967 -0.158 N19 KY2 23 KY2 N23 N7 N 0 1 N N N -15.188 131.635 89.486 -6.835 3.671 0.152 N23 KY2 24 KY2 N27 N8 N 0 1 N N N -12.642 129.029 82.928 -3.394 -3.832 0.570 N27 KY2 25 KY2 N29 N9 N 0 1 N N N -11.872 127.891 80.986 -2.110 -5.535 -0.344 N29 KY2 26 KY2 N30 N10 N 0 1 N N N -11.242 130.013 81.349 -3.869 -6.115 1.053 N30 KY2 27 KY2 O01 O1 O 0 1 N N N -11.107 126.978 91.149 0.361 4.248 0.931 O01 KY2 28 KY2 O04 O2 O 0 1 N N N -10.648 124.358 91.233 2.696 3.411 0.148 O04 KY2 29 KY2 O16 O3 O 0 1 N N N -13.768 125.603 89.909 0.122 0.909 0.270 O16 KY2 30 KY2 H1 H1 H 0 1 N N N -14.320 127.769 82.780 -2.637 -2.979 -1.190 H1 KY2 31 KY2 H2 H2 H 0 1 N N N -12.833 126.993 83.422 -1.545 -2.909 0.213 H2 KY2 32 KY2 H3 H3 H 0 1 N N N -14.175 129.261 84.960 -4.145 -1.341 -0.098 H3 KY2 33 KY2 H4 H4 H 0 1 N N N -14.798 127.581 85.092 -3.053 -1.271 1.305 H4 KY2 34 KY2 H5 H5 H 0 1 N N N -12.334 126.908 85.566 -1.224 -0.459 -0.159 H5 KY2 35 KY2 H6 H6 H 0 1 N N N -12.043 128.660 85.832 -2.316 -0.529 -1.562 H6 KY2 36 KY2 H7 H7 H 0 1 N N N -13.652 130.615 90.500 -6.254 2.618 -1.571 H7 KY2 37 KY2 H8 H8 H 0 1 N N N -13.174 131.364 88.940 -6.760 1.601 -0.200 H8 KY2 38 KY2 H9 H9 H 0 1 N N N -13.205 123.035 88.430 1.103 -0.849 -1.401 H9 KY2 39 KY2 H10 H10 H 0 1 N N N -12.979 127.584 89.651 -1.012 2.283 1.340 H10 KY2 40 KY2 H11 H11 H 0 1 N N N -13.348 125.617 87.587 -2.369 2.964 -0.673 H11 KY2 41 KY2 H12 H12 H 0 1 N N N -11.704 126.341 87.559 -1.489 1.749 -1.630 H12 KY2 42 KY2 H13 H13 H 0 1 N N N -12.157 128.691 88.759 -4.722 0.282 -0.506 H13 KY2 43 KY2 H14 H14 H 0 1 N N N -12.553 129.708 87.332 -4.053 1.332 -1.778 H14 KY2 44 KY2 H15 H15 H 0 1 N N N -14.999 129.605 88.010 -4.217 3.285 -0.324 H15 KY2 45 KY2 H16 H16 H 0 1 N N N -14.508 128.727 89.498 -4.723 2.268 1.047 H16 KY2 46 KY2 H17 H17 H 0 1 N N N -10.587 126.325 89.173 -0.109 3.732 -1.027 H17 KY2 47 KY2 H18 H18 H 0 1 N N N -11.426 124.279 89.277 1.776 2.384 -1.413 H18 KY2 48 KY2 H19 H19 H 0 1 N N N -13.144 125.089 91.726 1.704 1.474 1.518 H19 KY2 49 KY2 H20 H20 H 0 1 N N N -15.194 122.169 94.621 6.499 0.864 1.816 H20 KY2 50 KY2 H21 H21 H 0 1 N N N -15.906 118.623 92.005 5.439 -2.967 -1.657 H21 KY2 51 KY2 H22 H22 H 0 1 N N N -16.154 119.271 90.526 6.947 -2.731 -0.955 H22 KY2 52 KY2 H24 H24 H 0 1 N N N -15.001 132.497 89.957 -6.312 4.510 -0.047 H24 KY2 53 KY2 H25 H25 H 0 1 N N N -15.479 131.824 88.548 -7.799 3.770 -0.130 H25 KY2 54 KY2 H27 H27 H 0 1 N N N -12.612 129.873 83.463 -4.135 -3.559 1.133 H27 KY2 55 KY2 H28 H28 H 0 1 N N N -12.404 127.130 81.358 -1.572 -4.866 -0.796 H28 KY2 56 KY2 H29 H29 H 0 1 N N N -11.233 130.853 81.891 -4.610 -5.842 1.616 H29 KY2 57 KY2 H30 H30 H 0 1 N N N -10.726 129.964 80.494 -3.666 -7.057 0.942 H30 KY2 58 KY2 H31 H31 H 0 1 N N N -10.272 126.734 91.531 0.928 5.001 0.712 H31 KY2 59 KY2 H32 H32 H 0 1 N N N -10.836 123.435 91.353 2.761 4.279 -0.272 H32 KY2 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KY2 N29 C28 DOUB N N 1 KY2 N30 C28 SING N N 2 KY2 C28 N27 SING N N 3 KY2 N27 C26 SING N N 4 KY2 C26 C25 SING N N 5 KY2 C25 C24 SING N N 6 KY2 C24 N19 SING N N 7 KY2 N19 C18 SING N N 8 KY2 N19 C20 SING N N 9 KY2 C18 C17 SING N N 10 KY2 C20 C21 SING N N 11 KY2 C21 C22 SING N N 12 KY2 C17 O16 SING N N 13 KY2 C17 C02 SING N N 14 KY2 C15 N14 DOUB Y N 15 KY2 C15 N06 SING Y N 16 KY2 C22 N23 SING N N 17 KY2 N14 C13 SING Y N 18 KY2 O16 C05 SING N N 19 KY2 C02 C03 SING N N 20 KY2 C02 O01 SING N N 21 KY2 C03 C05 SING N N 22 KY2 C03 O04 SING N N 23 KY2 N06 C05 SING N N 24 KY2 N06 C07 SING Y N 25 KY2 C13 C07 DOUB Y N 26 KY2 C13 C11 SING Y N 27 KY2 N12 C11 SING N N 28 KY2 C07 N08 SING Y N 29 KY2 C11 N10 DOUB Y N 30 KY2 N08 C09 DOUB Y N 31 KY2 N10 C09 SING Y N 32 KY2 C26 H1 SING N N 33 KY2 C26 H2 SING N N 34 KY2 C25 H3 SING N N 35 KY2 C25 H4 SING N N 36 KY2 C24 H5 SING N N 37 KY2 C24 H6 SING N N 38 KY2 C22 H7 SING N N 39 KY2 C22 H8 SING N N 40 KY2 C15 H9 SING N N 41 KY2 C17 H10 SING N N 42 KY2 C18 H11 SING N N 43 KY2 C18 H12 SING N N 44 KY2 C20 H13 SING N N 45 KY2 C20 H14 SING N N 46 KY2 C21 H15 SING N N 47 KY2 C21 H16 SING N N 48 KY2 C02 H17 SING N N 49 KY2 C03 H18 SING N N 50 KY2 C05 H19 SING N N 51 KY2 C09 H20 SING N N 52 KY2 N12 H21 SING N N 53 KY2 N12 H22 SING N N 54 KY2 N23 H24 SING N N 55 KY2 N23 H25 SING N N 56 KY2 N27 H27 SING N N 57 KY2 N29 H28 SING N N 58 KY2 N30 H29 SING N N 59 KY2 N30 H30 SING N N 60 KY2 O01 H31 SING N N 61 KY2 O04 H32 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KY2 InChI InChI 1.03 "InChI=1S/C17H30N10O3/c18-3-1-5-26(6-2-4-22-17(20)21)7-10-12(28)13(29)16(30-10)27-9-25-11-14(19)23-8-24-15(11)27/h8-10,12-13,16,28-29H,1-7,18H2,(H2,19,23,24)(H4,20,21,22)/t10-,12-,13-,16-/m1/s1" KY2 InChIKey InChI 1.03 ALBPVVFHRWZNEG-XNIJJKJLSA-N KY2 SMILES_CANONICAL CACTVS 3.385 "NCCCN(CCCNC(N)=N)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" KY2 SMILES CACTVS 3.385 "NCCCN(CCCNC(N)=N)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" KY2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCCN(CCCN)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" KY2 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CCCN)CCCNC(=N)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id KY2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]propyl]guanidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KY2 "Create component" 2019-07-04 EBI KY2 "Initial release" 2020-03-04 RCSB ##