data_KY9 # _chem_comp.id KY9 _chem_comp.name "(2R)-2-(6,7-dihydro-5H-pyrrolo[1,2-c]imidazol-1-yl)-2-[5-[2-[4-[[4-(hydroxymethyl)piperidin-1-yl]methyl]phenyl]ethynyl]-3-oxidanylidene-7-(trifluoromethyl)-1H-isoindol-2-yl]-N-(1,3-thiazol-2-yl)ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H33 F3 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-07 _chem_comp.pdbx_modified_date 2022-10-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 674.735 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A2A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KY9 C2 C1 C 0 1 N N N -4.922 1.233 3.166 8.822 -0.353 -2.021 C2 KY9 1 KY9 C3 C2 C 0 1 Y N N -3.782 0.774 2.403 7.380 -0.019 -1.736 C3 KY9 2 KY9 C4 C3 C 0 1 Y N N -3.611 1.333 1.127 6.438 -1.031 -1.673 C4 KY9 3 KY9 C5 C4 C 0 1 Y N N -2.542 0.897 0.349 5.118 -0.733 -1.407 C5 KY9 4 KY9 C6 C5 C 0 1 Y N N -1.654 -0.065 0.822 4.733 0.594 -1.201 C6 KY9 5 KY9 C7 C6 C 0 1 N N N -0.571 -0.573 0.034 3.364 0.911 -0.924 C7 KY9 6 KY9 C8 C7 C 0 1 N N N 0.331 -1.024 -0.538 2.241 1.171 -0.697 C8 KY9 7 KY9 C10 C8 C 0 1 Y N N 2.479 -2.216 -0.604 0.490 2.816 -0.215 C10 KY9 8 KY9 C11 C9 C 0 1 Y N N 3.490 -2.759 -1.357 -0.831 3.123 0.046 C11 KY9 9 KY9 C12 C10 C 0 1 N N N 4.612 -3.467 -0.720 -1.242 4.557 0.262 C12 KY9 10 KY9 C16 C11 C 0 1 Y N N 3.529 -2.654 -2.754 -1.775 2.121 0.110 C16 KY9 11 KY9 N1 N1 N 0 1 N N N -6.053 0.222 3.030 9.526 -0.604 -0.756 N1 KY9 12 KY9 C9 C12 C 0 1 Y N N 1.431 -1.562 -1.248 0.873 1.487 -0.421 C9 KY9 13 KY9 F13 F1 F 0 1 N N N 4.508 -3.219 0.607 -0.120 5.385 0.149 F13 KY9 14 KY9 F14 F2 F 0 1 N N N 4.555 -4.805 -0.855 -2.188 4.921 -0.702 F14 KY9 15 KY9 F15 F3 F 0 1 N N N 5.876 -3.225 -1.127 -1.798 4.696 1.538 F15 KY9 16 KY9 C17 C13 C 0 1 Y N N 2.476 -1.993 -3.400 -1.410 0.786 -0.087 C17 KY9 17 KY9 C18 C14 C 0 1 N N N 2.778 -2.094 -4.862 -2.621 -0.048 0.039 C18 KY9 18 KY9 N19 N2 N 0 1 N N N 3.845 -2.810 -5.002 -3.691 0.721 0.301 N19 KY9 19 KY9 C20 C15 C 0 1 N N R 4.396 -3.073 -6.360 -5.062 0.240 0.491 C20 KY9 20 KY9 C21 C16 C 0 1 Y N N 5.210 -4.300 -6.399 -5.102 -0.714 1.657 C21 KY9 21 KY9 C22 C17 C 0 1 Y N N 6.496 -4.445 -6.754 -6.024 -0.726 2.639 C22 KY9 22 KY9 C23 C18 C 0 1 N N N 7.697 -3.691 -7.338 -7.277 -0.034 3.130 C23 KY9 23 KY9 C24 C19 C 0 1 N N N 8.826 -4.754 -7.502 -7.888 -1.028 4.145 C24 KY9 24 KY9 C25 C20 C 0 1 N N N 8.180 -6.069 -7.007 -6.647 -1.825 4.602 C25 KY9 25 KY9 N26 N3 N 0 1 Y N N 6.800 -5.763 -6.591 -5.690 -1.742 3.489 N26 KY9 26 KY9 C27 C21 C 0 1 Y N N 5.705 -6.407 -6.130 -4.571 -2.321 2.995 C27 KY9 27 KY9 N28 N4 N 0 1 Y N N 4.789 -5.507 -6.005 -4.230 -1.703 1.898 N28 KY9 28 KY9 C29 C22 C 0 1 N N N 5.269 -1.905 -6.658 -5.522 -0.472 -0.755 C29 KY9 29 KY9 N30 N5 N 0 1 N N N 5.264 -1.522 -8.036 -6.759 -1.002 -0.811 N30 KY9 30 KY9 C31 C23 C 0 1 Y N N 6.103 -0.491 -8.449 -7.183 -1.658 -1.961 C31 KY9 31 KY9 S32 S1 S 0 1 Y N N 7.209 0.458 -7.494 -8.721 -2.376 -2.168 S32 KY9 32 KY9 C33 C24 C 0 1 Y N N 7.745 1.371 -8.890 -8.279 -2.878 -3.798 C33 KY9 33 KY9 C34 C25 C 0 1 Y N N 7.041 0.878 -9.949 -7.032 -2.466 -4.034 C34 KY9 34 KY9 N35 N6 N 0 1 Y N N 6.184 -0.096 -9.722 -6.472 -1.811 -3.034 N35 KY9 35 KY9 O36 O1 O 0 1 N N N 5.943 -1.279 -5.781 -4.778 -0.567 -1.709 O36 KY9 36 KY9 C37 C26 C 0 1 N N N 4.539 -3.198 -3.753 -3.262 2.122 0.368 C37 KY9 37 KY9 O38 O2 O 0 1 N N N 2.090 -1.590 -5.771 -2.647 -1.258 -0.078 O38 KY9 38 KY9 C39 C27 C 0 1 Y N N 1.388 -1.454 -2.689 -0.080 0.470 -0.357 C39 KY9 39 KY9 C40 C28 C 0 1 Y N N -1.824 -0.631 2.087 5.689 1.610 -1.266 C40 KY9 40 KY9 C41 C29 C 0 1 Y N N -2.915 -0.218 2.847 7.006 1.298 -1.533 C41 KY9 41 KY9 C42 C30 C 0 1 N N N -5.599 -0.809 3.937 9.007 -1.808 -0.095 C42 KY9 42 KY9 C43 C31 C 0 1 N N N -6.625 -1.915 4.014 9.658 -1.957 1.282 C43 KY9 43 KY9 C44 C32 C 0 1 N N N -7.937 -1.366 4.585 11.177 -2.058 1.114 C44 KY9 44 KY9 C45 C33 C 0 1 N N N -8.439 -0.294 3.614 11.685 -0.814 0.380 C45 KY9 45 KY9 C46 C34 C 0 1 N N N -7.365 0.770 3.427 10.975 -0.699 -0.970 C46 KY9 46 KY9 C47 C35 C 0 1 N N N -8.947 -2.514 4.558 11.838 -2.147 2.491 C47 KY9 47 KY9 O48 O3 O 0 1 N N N -9.053 -3.191 5.820 13.242 -2.359 2.332 O48 KY9 48 KY9 H1 H1 H 0 1 N N N -4.641 1.331 4.225 8.871 -1.243 -2.647 H1 KY9 49 KY9 H2 H2 H 0 1 N N N -5.253 2.209 2.782 9.293 0.482 -2.539 H2 KY9 50 KY9 H3 H3 H 0 1 N N N -4.293 2.084 0.757 6.738 -2.056 -1.833 H3 KY9 51 KY9 H4 H4 H 0 1 N N N -2.399 1.312 -0.638 4.384 -1.524 -1.359 H4 KY9 52 KY9 H5 H5 H 0 1 N N N 2.496 -2.295 0.473 1.227 3.604 -0.264 H5 KY9 53 KY9 H7 H7 H 0 1 N N N 3.579 -3.132 -7.095 -5.720 1.086 0.690 H7 KY9 54 KY9 H8 H8 H 0 1 N N N 8.019 -2.893 -6.653 -7.025 0.905 3.622 H8 KY9 55 KY9 H9 H9 H 0 1 N N N 7.438 -3.254 -8.314 -7.965 0.141 2.303 H9 KY9 56 KY9 H10 H10 H 0 1 N N N 9.131 -4.841 -8.555 -8.341 -0.498 4.983 H10 KY9 57 KY9 H11 H11 H 0 1 N N N 8.170 -6.810 -7.820 -6.222 -1.377 5.499 H11 KY9 58 KY9 H12 H12 H 0 1 N N N 5.615 -7.461 -5.911 -4.050 -3.158 3.434 H12 KY9 59 KY9 H13 H13 H 0 1 N N N 4.668 -1.987 -8.691 -7.354 -0.926 -0.049 H13 KY9 60 KY9 H14 H14 H 0 1 N N N 8.481 2.161 -8.908 -8.907 -3.424 -4.486 H14 KY9 61 KY9 H15 H15 H 0 1 N N N 7.182 1.274 -10.944 -6.524 -2.646 -4.970 H15 KY9 62 KY9 H16 H16 H 0 1 N N N 4.660 -4.288 -3.668 -3.470 2.532 1.356 H16 KY9 63 KY9 H17 H17 H 0 1 N N N 5.521 -2.711 -3.656 -3.773 2.708 -0.396 H17 KY9 64 KY9 H18 H18 H 0 1 N N N 0.560 -0.982 -3.196 0.213 -0.558 -0.511 H18 KY9 65 KY9 H19 H19 H 0 1 N N N -1.130 -1.367 2.465 5.398 2.638 -1.107 H19 KY9 66 KY9 H20 H20 H 0 1 N N N -3.092 -0.680 3.807 7.747 2.082 -1.579 H20 KY9 67 KY9 H21 H21 H 0 1 N N N -4.646 -1.221 3.574 7.926 -1.721 0.022 H21 KY9 68 KY9 H22 H22 H 0 1 N N N -5.454 -0.376 4.938 9.237 -2.683 -0.702 H22 KY9 69 KY9 H23 H23 H 0 1 N N N -6.805 -2.317 3.006 9.417 -1.088 1.894 H23 KY9 70 KY9 H24 H24 H 0 1 N N N -6.250 -2.717 4.667 9.284 -2.859 1.766 H24 KY9 71 KY9 H25 H25 H 0 1 N N N -7.803 -0.965 5.600 11.420 -2.948 0.534 H25 KY9 72 KY9 H26 H26 H 0 1 N N N -9.349 0.172 4.021 11.476 0.072 0.978 H26 KY9 73 KY9 H27 H27 H 0 1 N N N -8.668 -0.758 2.643 12.760 -0.900 0.221 H27 KY9 74 KY9 H28 H28 H 0 1 N N N -7.243 1.311 4.377 11.196 -1.579 -1.574 H28 KY9 75 KY9 H29 H29 H 0 1 N N N -7.700 1.469 2.647 11.325 0.194 -1.490 H29 KY9 76 KY9 H30 H30 H 0 1 N N N -9.934 -2.108 4.293 11.670 -1.218 3.036 H30 KY9 77 KY9 H31 H31 H 0 1 N N N -8.633 -3.241 3.794 11.406 -2.978 3.048 H31 KY9 78 KY9 H32 H32 H 0 1 N N N -9.690 -3.892 5.751 13.727 -2.425 3.166 H32 KY9 79 KY9 H6 H6 H 0 1 N N N 9.700 -4.493 -6.888 -8.614 -1.681 3.661 H6 KY9 80 KY9 H33 H33 H 0 1 N N N 8.749 -6.467 -6.154 -6.916 -2.864 4.790 H33 KY9 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KY9 C34 N35 SING Y N 1 KY9 C34 C33 DOUB Y N 2 KY9 N35 C31 DOUB Y N 3 KY9 C33 S32 SING Y N 4 KY9 C31 N30 SING N N 5 KY9 C31 S32 SING Y N 6 KY9 N30 C29 SING N N 7 KY9 C24 C23 SING N N 8 KY9 C24 C25 SING N N 9 KY9 C23 C22 SING N N 10 KY9 C25 N26 SING N N 11 KY9 C22 N26 SING Y N 12 KY9 C22 C21 DOUB Y N 13 KY9 C29 C20 SING N N 14 KY9 C29 O36 DOUB N N 15 KY9 N26 C27 SING Y N 16 KY9 C21 C20 SING N N 17 KY9 C21 N28 SING Y N 18 KY9 C20 N19 SING N N 19 KY9 C27 N28 DOUB Y N 20 KY9 O38 C18 DOUB N N 21 KY9 N19 C18 SING N N 22 KY9 N19 C37 SING N N 23 KY9 C18 C17 SING N N 24 KY9 C37 C16 SING N N 25 KY9 C17 C16 DOUB Y N 26 KY9 C17 C39 SING Y N 27 KY9 C16 C11 SING Y N 28 KY9 C39 C9 DOUB Y N 29 KY9 C11 C12 SING N N 30 KY9 C11 C10 DOUB Y N 31 KY9 C9 C10 SING Y N 32 KY9 C9 C8 SING N N 33 KY9 F15 C12 SING N N 34 KY9 F14 C12 SING N N 35 KY9 C12 F13 SING N N 36 KY9 C8 C7 TRIP N N 37 KY9 C7 C6 SING N N 38 KY9 C5 C6 DOUB Y N 39 KY9 C5 C4 SING Y N 40 KY9 C6 C40 SING Y N 41 KY9 C4 C3 DOUB Y N 42 KY9 C40 C41 DOUB Y N 43 KY9 C3 C41 SING Y N 44 KY9 C3 C2 SING N N 45 KY9 N1 C2 SING N N 46 KY9 N1 C46 SING N N 47 KY9 N1 C42 SING N N 48 KY9 C46 C45 SING N N 49 KY9 C45 C44 SING N N 50 KY9 C42 C43 SING N N 51 KY9 C43 C44 SING N N 52 KY9 C47 C44 SING N N 53 KY9 C47 O48 SING N N 54 KY9 C2 H1 SING N N 55 KY9 C2 H2 SING N N 56 KY9 C4 H3 SING N N 57 KY9 C5 H4 SING N N 58 KY9 C10 H5 SING N N 59 KY9 C20 H7 SING N N 60 KY9 C23 H8 SING N N 61 KY9 C23 H9 SING N N 62 KY9 C24 H10 SING N N 63 KY9 C25 H11 SING N N 64 KY9 C27 H12 SING N N 65 KY9 N30 H13 SING N N 66 KY9 C33 H14 SING N N 67 KY9 C34 H15 SING N N 68 KY9 C37 H16 SING N N 69 KY9 C37 H17 SING N N 70 KY9 C39 H18 SING N N 71 KY9 C40 H19 SING N N 72 KY9 C41 H20 SING N N 73 KY9 C42 H21 SING N N 74 KY9 C42 H22 SING N N 75 KY9 C43 H23 SING N N 76 KY9 C43 H24 SING N N 77 KY9 C44 H25 SING N N 78 KY9 C45 H26 SING N N 79 KY9 C45 H27 SING N N 80 KY9 C46 H28 SING N N 81 KY9 C46 H29 SING N N 82 KY9 C47 H30 SING N N 83 KY9 C47 H31 SING N N 84 KY9 O48 H32 SING N N 85 KY9 C24 H6 SING N N 86 KY9 C25 H33 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KY9 InChI InChI 1.06 "InChI=1S/C35H33F3N6O3S/c36-35(37,38)28-17-25(8-5-22-3-6-23(7-4-22)18-42-13-9-24(20-45)10-14-42)16-26-27(28)19-44(33(26)47)31(32(46)41-34-39-11-15-48-34)30-29-2-1-12-43(29)21-40-30/h3-4,6-7,11,15-17,21,24,31,45H,1-2,9-10,12-14,18-20H2,(H,39,41,46)/t31-/m1/s1" KY9 InChIKey InChI 1.06 PPUARJAODGRSLP-WJOKGBTCSA-N KY9 SMILES_CANONICAL CACTVS 3.385 "OCC1CCN(CC1)Cc2ccc(cc2)C#Cc3cc4C(=O)N(Cc4c(c3)C(F)(F)F)[C@@H](C(=O)Nc5sccn5)c6ncn7CCCc67" KY9 SMILES CACTVS 3.385 "OCC1CCN(CC1)Cc2ccc(cc2)C#Cc3cc4C(=O)N(Cc4c(c3)C(F)(F)F)[CH](C(=O)Nc5sccn5)c6ncn7CCCc67" KY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC(CC2)CO)C#Cc3cc4c(c(c3)C(F)(F)F)CN(C4=O)[C@H](c5c6n(cn5)CCC6)C(=O)Nc7nccs7" KY9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CN2CCC(CC2)CO)C#Cc3cc4c(c(c3)C(F)(F)F)CN(C4=O)C(c5c6n(cn5)CCC6)C(=O)Nc7nccs7" # _pdbx_chem_comp_identifier.comp_id KY9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-(6,7-dihydro-5~{H}-pyrrolo[1,2-c]imidazol-1-yl)-2-[5-[2-[4-[[4-(hydroxymethyl)piperidin-1-yl]methyl]phenyl]ethynyl]-3-oxidanylidene-7-(trifluoromethyl)-1~{H}-isoindol-2-yl]-~{N}-(1,3-thiazol-2-yl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KY9 "Create component" 2022-06-07 PDBE KY9 "Modify descriptor" 2022-08-22 RCSB KY9 "Initial release" 2022-10-19 RCSB #