data_KYI # _chem_comp.id KYI _chem_comp.name "5-(2-phenylphenyl)-1H-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H12 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-07 _chem_comp.pdbx_modified_date 2023-09-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.279 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KYI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A34 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KYI C10 C1 C 0 1 Y N N 1.239 -7.557 17.881 1.788 0.340 -0.027 C10 KYI 1 KYI C13 C2 C 0 1 Y N N 2.322 -7.798 14.329 0.136 -2.839 1.111 C13 KYI 2 KYI C15 C3 C 0 1 Y N N 4.012 -8.766 15.737 1.786 -3.383 -0.543 C15 KYI 3 KYI C17 C4 C 0 1 Y N N 1.857 -6.835 18.915 3.117 0.749 0.036 C17 KYI 4 KYI C20 C5 C 0 1 Y N N -0.798 -7.623 19.194 1.113 2.640 -0.344 C20 KYI 5 KYI C01 C6 C 0 1 N N N -0.821 -8.723 17.058 -0.643 0.872 -0.288 C01 KYI 6 KYI C02 C7 C 0 1 N N N -0.328 -9.923 16.575 -1.554 1.105 0.841 C02 KYI 7 KYI O03 O1 O 0 1 N N N 0.688 -10.395 17.003 -1.160 1.651 1.855 O03 KYI 8 KYI N04 N1 N 0 1 N N N -0.978 -10.583 15.639 -2.838 0.703 0.730 N04 KYI 9 KYI C05 C8 C 0 1 N N N -2.119 -10.146 15.113 -3.266 0.101 -0.394 C05 KYI 10 KYI O06 O2 O 0 1 N N N -2.675 -10.789 14.273 -4.425 -0.257 -0.467 O06 KYI 11 KYI N07 N2 N 0 1 N N N -2.633 -8.993 15.576 -2.447 -0.121 -1.435 N07 KYI 12 KYI C08 C9 C 0 1 N N N -2.006 -8.259 16.518 -1.137 0.262 -1.403 C08 KYI 13 KYI C09 C10 C 0 1 Y N N -0.120 -7.973 18.033 0.775 1.294 -0.219 C09 KYI 14 KYI C11 C11 C 0 1 Y N N 2.025 -7.836 16.742 1.444 -1.096 0.102 C11 KYI 15 KYI C12 C12 C 0 1 Y N N 1.556 -7.500 15.459 0.452 -1.501 0.995 C12 KYI 16 KYI C14 C13 C 0 1 Y N N 3.545 -8.425 14.473 0.801 -3.779 0.344 C14 KYI 17 KYI C16 C14 C 0 1 Y N N 3.241 -8.484 16.857 2.111 -2.048 -0.668 C16 KYI 18 KYI C18 C15 C 0 1 Y N N 1.147 -6.484 20.058 3.433 2.087 -0.090 C18 KYI 19 KYI C19 C16 C 0 1 Y N N -0.168 -6.887 20.192 2.435 3.028 -0.279 C19 KYI 20 KYI H1 H1 H 0 1 N N N 1.959 -7.539 13.345 -0.629 -3.154 1.806 H1 KYI 21 KYI H2 H2 H 0 1 N N N 4.972 -9.249 15.848 2.302 -4.121 -1.139 H2 KYI 22 KYI H3 H3 H 0 1 N N N 2.894 -6.549 18.821 3.900 0.021 0.184 H3 KYI 23 KYI H4 H4 H 0 1 N N N -1.827 -7.926 19.323 0.340 3.379 -0.493 H4 KYI 24 KYI H6 H6 H 0 1 N N N -0.598 -11.448 15.310 -3.454 0.848 1.465 H6 KYI 25 KYI H7 H7 H 0 1 N N N -2.425 -7.319 16.847 -0.495 0.075 -2.251 H7 KYI 26 KYI H8 H8 H 0 1 N N N 0.600 -7.010 15.347 -0.068 -0.768 1.594 H8 KYI 27 KYI H9 H9 H 0 1 N N N 4.140 -8.651 13.600 0.551 -4.825 0.439 H9 KYI 28 KYI H10 H10 H 0 1 N N N 3.597 -8.776 17.834 2.880 -1.740 -1.361 H10 KYI 29 KYI H11 H11 H 0 1 N N N 1.620 -5.901 20.835 4.465 2.401 -0.041 H11 KYI 30 KYI H12 H12 H 0 1 N N N -0.715 -6.626 21.086 2.694 4.072 -0.377 H12 KYI 31 KYI H5 H5 H 0 1 N N N -3.506 -8.670 15.211 -2.796 -0.558 -2.228 H5 KYI 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KYI O06 C05 DOUB N N 1 KYI C13 C14 DOUB Y N 2 KYI C13 C12 SING Y N 3 KYI C14 C15 SING Y N 4 KYI C05 N07 SING N N 5 KYI C05 N04 SING N N 6 KYI C12 C11 DOUB Y N 7 KYI N07 C08 SING N N 8 KYI N04 C02 SING N N 9 KYI C15 C16 DOUB Y N 10 KYI C08 C01 DOUB N N 11 KYI C02 O03 DOUB N N 12 KYI C02 C01 SING N N 13 KYI C11 C16 SING Y N 14 KYI C11 C10 SING N N 15 KYI C01 C09 SING N N 16 KYI C10 C09 DOUB Y N 17 KYI C10 C17 SING Y N 18 KYI C09 C20 SING Y N 19 KYI C17 C18 DOUB Y N 20 KYI C20 C19 DOUB Y N 21 KYI C18 C19 SING Y N 22 KYI C13 H1 SING N N 23 KYI C15 H2 SING N N 24 KYI C17 H3 SING N N 25 KYI C20 H4 SING N N 26 KYI N04 H6 SING N N 27 KYI C08 H7 SING N N 28 KYI C12 H8 SING N N 29 KYI C14 H9 SING N N 30 KYI C16 H10 SING N N 31 KYI C18 H11 SING N N 32 KYI C19 H12 SING N N 33 KYI N07 H5 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KYI InChI InChI 1.06 "InChI=1S/C16H12N2O2/c19-15-14(10-17-16(20)18-15)13-9-5-4-8-12(13)11-6-2-1-3-7-11/h1-10H,(H2,17,18,19,20)" KYI InChIKey InChI 1.06 KRZFUPKUAGIREV-UHFFFAOYSA-N KYI SMILES_CANONICAL CACTVS 3.385 "O=C1NC=C(C(=O)N1)c2ccccc2c3ccccc3" KYI SMILES CACTVS 3.385 "O=C1NC=C(C(=O)N1)c2ccccc2c3ccccc3" KYI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2C3=CNC(=O)NC3=O" KYI SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccccc2C3=CNC(=O)NC3=O" # _pdbx_chem_comp_identifier.comp_id KYI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-(2-phenylphenyl)-1~{H}-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KYI "Create component" 2022-06-07 PDBE KYI "Modify aromatic_flag" 2022-06-17 PDBE KYI "Modify descriptor" 2022-08-22 RCSB KYI "Initial release" 2023-09-27 RCSB #